Wall clock time and date at job start Tue Mar 31 2020 11:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42099 * 108.57544 * 2 1 4 4 O 1.42101 * 108.58117 * 228.97255 * 2 1 3 5 5 C 1.81402 * 101.91917 * 114.48366 * 2 1 3 6 6 C 1.53004 * 112.84665 * 174.15594 * 5 2 1 7 7 N 1.46494 * 109.47422 * 306.60509 * 6 5 2 8 8 C 1.34775 * 120.00063 * 177.34764 * 7 6 5 9 9 O 1.21286 * 120.00089 * 359.97438 * 8 7 6 10 10 C 1.50704 * 120.00050 * 179.97438 * 8 7 6 11 11 C 1.53002 * 109.47132 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46996 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47267 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47325 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99739 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00398 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99799 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47282 * 90.00101 * 18 16 14 20 20 H 1.48496 * 109.47301 * 209.99948 * 18 16 14 21 21 H 1.48502 * 109.47296 * 330.00472 * 18 16 14 22 22 C 1.53783 * 113.61805 * 305.35434 * 5 2 1 23 23 C 1.53777 * 87.07793 * 139.97987 * 22 5 2 24 24 C 1.53774 * 87.17699 * 334.52817 * 23 22 5 25 25 H 1.09003 * 109.47247 * 301.46951 * 1 2 3 26 26 H 1.09000 * 109.46745 * 61.46976 * 1 2 3 27 27 H 1.08996 * 109.47297 * 181.47075 * 1 2 3 28 28 H 1.09004 * 109.47013 * 66.60432 * 6 5 2 29 29 H 1.09006 * 109.46935 * 186.59918 * 6 5 2 30 30 H 0.97001 * 120.00173 * 357.34094 * 7 6 5 31 31 H 1.08990 * 109.47373 * 299.99882 * 10 8 7 32 32 H 1.09003 * 109.46820 * 59.99819 * 10 8 7 33 33 H 1.08990 * 109.47519 * 300.00556 * 11 10 8 34 34 H 1.09003 * 109.46792 * 60.00565 * 11 10 8 35 35 H 1.09000 * 109.47740 * 300.00742 * 12 11 10 36 36 H 1.09003 * 109.46747 * 60.00711 * 12 11 10 37 37 H 1.09000 * 109.47138 * 300.00855 * 13 12 11 38 38 H 1.09003 * 109.46865 * 60.00528 * 13 12 11 39 39 H 0.96996 * 120.00260 * 179.97438 * 17 16 14 40 40 H 1.08995 * 113.61125 * 25.43211 * 22 5 2 41 41 H 1.08997 * 113.68852 * 254.54474 * 22 5 2 42 42 H 1.09001 * 113.61607 * 89.12306 * 23 22 5 43 43 H 1.09000 * 113.61257 * 219.93407 * 23 22 5 44 44 H 1.08997 * 113.61639 * 140.02578 * 24 23 22 45 45 H 1.09006 * 113.61181 * 270.92350 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.6838 -0.9871 1.8211 7 7 4.2051 -1.7754 0.7019 8 6 5.5180 -2.0740 0.6416 9 8 6.2680 -1.6895 1.5138 10 6 6.0541 -2.8855 -0.5096 11 6 7.5620 -3.0801 -0.3378 12 6 8.1061 -3.9045 -1.5061 13 6 9.6138 -4.0996 -1.3341 14 6 10.1497 -4.9122 -2.4845 15 1 9.4819 -5.2548 -3.2610 16 6 11.4928 -5.2182 -2.5458 17 7 12.3060 -4.8015 -1.6000 18 14 12.1572 -6.2248 -3.9722 19 1 12.5686 -5.3147 -5.0711 20 1 13.3303 -7.0135 -3.5174 21 1 11.1009 -7.1464 -4.4622 22 6 1.5182 -0.0094 2.7934 23 6 1.2536 -1.3988 3.3970 24 6 1.3037 -1.9480 1.9616 25 1 -0.3634 0.5365 0.8765 26 1 -0.3633 0.4908 -0.9029 27 1 -0.3634 -1.0273 0.0264 28 1 4.2094 -0.0333 1.8697 29 1 3.8355 -1.5333 2.7522 30 1 3.6053 -2.0827 0.0042 31 1 5.5619 -3.8577 -0.5291 32 1 5.8600 -2.3611 -1.4452 33 1 8.0539 -2.1077 -0.3184 34 1 7.7563 -3.6043 0.5979 35 1 7.6141 -4.8769 -1.5251 36 1 7.9117 -3.3806 -2.4420 37 1 10.1062 -3.1274 -1.3149 38 1 9.8079 -4.6237 -0.3982 39 1 13.2507 -5.0171 -1.6429 40 1 0.6104 0.5264 2.5164 41 1 2.2057 0.5986 3.3815 42 1 2.0627 -1.7605 4.0315 43 1 0.2741 -1.4917 3.8661 44 1 1.8192 -2.9048 1.8779 45 1 0.3373 -1.9413 1.4575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588727777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:00 Heat of formation + Delta-G solvation = -103.556744 kcal Electronic energy + Delta-G solvation = -24588.799761 eV Core-core repulsion = 20927.000341 eV Total energy + Delta-G solvation = -3661.799421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43314 -39.17760 -37.51491 -36.53534 -34.95847 -34.45581 -32.56050 -30.33537 -29.93943 -28.44701 -26.61897 -25.67175 -24.40932 -22.19205 -20.64755 -20.17287 -19.88909 -18.88419 -17.97121 -17.12172 -16.55563 -16.32561 -16.17556 -15.96554 -15.75689 -15.37533 -14.58999 -14.39033 -14.22608 -14.04144 -13.79291 -13.62300 -13.39626 -13.04694 -12.81416 -12.63454 -12.52252 -12.48907 -12.41017 -12.00096 -11.61317 -11.58561 -11.53469 -11.30658 -11.23614 -10.92805 -10.47687 -10.47157 -10.44440 -10.33394 -9.80601 -9.53750 -9.24351 -9.15853 -8.92254 -8.25225 -5.90137 -3.92289 -0.59684 2.14484 2.74276 2.78691 3.05233 3.28907 3.38010 3.43701 3.47232 3.56750 3.70364 3.87441 3.99298 4.17501 4.35253 4.52946 4.53625 4.73204 4.86564 4.95011 5.01819 5.13212 5.22645 5.25584 5.27398 5.36254 5.44811 5.45304 5.49568 5.58197 5.96398 6.23174 6.23571 6.39384 6.63380 6.92576 7.10150 7.27462 7.42531 7.80247 7.96913 8.11932 8.26615 8.53988 9.15555 9.71021 11.21265 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.002189 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.270088 B =12787.868407 C =13227.818549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.422 3.578 3 O -0.929 6.929 4 O -0.931 6.931 5 C -0.584 4.584 6 C 0.159 3.841 7 N -0.752 5.752 8 C 0.517 3.483 9 O -0.534 6.534 10 C -0.140 4.140 11 C -0.103 4.103 12 C -0.111 4.111 13 C 0.020 3.980 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.054 3.946 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.104 4.104 23 C -0.127 4.127 24 C -0.115 4.115 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.411 0.589 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.990 9.644 9.666 35.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.604 3.396 3 O -0.926 6.926 4 O -0.927 6.927 5 C -0.674 4.674 6 C 0.034 3.966 7 N -0.412 5.412 8 C 0.305 3.695 9 O -0.409 6.409 10 C -0.180 4.180 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.143 4.143 23 C -0.165 4.165 24 C -0.153 4.153 25 H 0.149 0.851 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.250 0.750 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -31.670 10.220 9.674 34.655 hybrid contribution -0.464 -0.891 -0.546 1.143 sum -32.134 9.329 9.128 34.683 Atomic orbital electron populations 1.30371 1.26625 1.11876 1.12052 1.08078 0.78491 0.76033 0.77015 1.93611 1.78844 1.34118 1.86039 1.93531 1.78770 1.66884 1.53559 1.31597 1.04233 1.10652 1.20940 1.20724 0.86031 0.97835 0.92026 1.46505 1.10466 1.57240 1.27000 1.21131 0.80866 0.79678 0.87830 1.90705 1.57056 1.52897 1.40289 1.21817 0.99569 1.00122 0.96463 1.21460 0.90809 1.01535 1.00330 1.21653 0.99784 0.97724 0.95677 1.19099 0.88814 0.96903 0.96929 1.21296 0.93147 1.33182 1.08084 0.92741 1.25046 0.97220 0.96250 0.96118 1.69975 1.04054 1.46343 1.33179 0.86608 0.78496 0.80264 0.82688 1.20724 1.21304 1.19935 1.22716 1.00074 0.97581 0.93925 1.22791 1.03220 0.94710 0.95791 1.22943 0.97991 0.96127 0.98273 0.85086 0.84804 0.84846 0.89680 0.89338 0.74978 0.88951 0.88706 0.91758 0.91829 0.93454 0.93385 0.96583 0.96609 0.93088 0.88647 0.88681 0.88922 0.90246 0.88788 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.57 9.51 101.05 0.96 -0.61 16 2 S 2.42 17.06 4.89 -107.50 -0.53 16.54 16 3 O -0.93 -10.35 18.10 -57.83 -1.05 -11.40 16 4 O -0.93 -9.32 15.57 -57.83 -0.90 -10.22 16 5 C -0.58 -3.23 1.02 -89.66 -0.09 -3.32 16 6 C 0.16 1.45 5.00 -4.04 -0.02 1.43 16 7 N -0.75 -8.59 5.17 -60.29 -0.31 -8.90 16 8 C 0.52 7.83 7.83 -10.98 -0.09 7.74 16 9 O -0.53 -10.03 15.98 5.55 0.09 -9.94 16 10 C -0.14 -2.07 5.70 -27.88 -0.16 -2.23 16 11 C -0.10 -1.96 4.50 -26.73 -0.12 -2.08 16 12 C -0.11 -2.39 5.15 -26.73 -0.14 -2.52 16 13 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 14 C -0.52 -15.31 9.11 -34.44 -0.31 -15.62 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -28.04 13.29 55.43 0.74 -27.31 16 18 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 22 C -0.10 -0.34 7.10 -25.92 -0.18 -0.52 16 23 C -0.13 -0.35 7.72 -25.92 -0.20 -0.55 16 24 C -0.12 -0.37 7.10 -25.78 -0.18 -0.55 16 25 H 0.13 0.03 6.49 -51.92 -0.34 -0.31 16 26 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 27 H 0.13 0.05 6.60 -51.93 -0.34 -0.30 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 0.76 7.32 -51.93 -0.38 0.38 16 30 H 0.41 4.09 6.01 -40.82 -0.25 3.85 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.10 0.08 6.27 -51.93 -0.33 -0.25 16 41 H 0.09 0.33 8.10 -51.93 -0.42 -0.09 16 42 H 0.09 0.33 7.62 -51.93 -0.40 -0.07 16 43 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.09 0.36 8.11 -51.93 -0.42 -0.06 16 45 H 0.10 0.05 5.76 -51.93 -0.30 -0.25 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -39.39 371.84 -9.50 -48.89 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -7.35 Total: -3.67 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -0.77 Total: -16.91 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.42 Total: -36.21 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -1.86 Total: -31.55 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 17.06 SS G_CDS: -0.53 Total: 16.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -39.39 -9.50 -48.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588727777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.668 kcal (2) G-P(sol) polarization free energy of solvation -39.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds