Wall clock time and date at job start Tue Mar 31 2020 11:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42099 * 108.57544 * 2 1 4 4 O 1.42101 * 108.58117 * 228.97255 * 2 1 3 5 5 C 1.81402 * 101.91917 * 114.48366 * 2 1 3 6 6 C 1.53004 * 112.84665 * 174.15594 * 5 2 1 7 7 N 1.46494 * 109.47422 * 306.60509 * 6 5 2 8 8 C 1.34775 * 120.00063 * 177.34764 * 7 6 5 9 9 O 1.21286 * 120.00089 * 359.97438 * 8 7 6 10 10 C 1.50704 * 120.00050 * 179.97438 * 8 7 6 11 11 C 1.53002 * 109.47132 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46996 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47267 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47325 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99739 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00398 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99799 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47282 * 90.00101 * 18 16 14 20 20 H 1.48496 * 109.47301 * 209.99948 * 18 16 14 21 21 H 1.48502 * 109.47296 * 330.00472 * 18 16 14 22 22 C 1.53783 * 113.61805 * 305.35434 * 5 2 1 23 23 C 1.53777 * 87.07793 * 139.97987 * 22 5 2 24 24 C 1.53774 * 87.17699 * 334.52817 * 23 22 5 25 25 H 1.09003 * 109.47247 * 301.46951 * 1 2 3 26 26 H 1.09000 * 109.46745 * 61.46976 * 1 2 3 27 27 H 1.08996 * 109.47297 * 181.47075 * 1 2 3 28 28 H 1.09004 * 109.47013 * 66.60432 * 6 5 2 29 29 H 1.09006 * 109.46935 * 186.59918 * 6 5 2 30 30 H 0.97001 * 120.00173 * 357.34094 * 7 6 5 31 31 H 1.08990 * 109.47373 * 299.99882 * 10 8 7 32 32 H 1.09003 * 109.46820 * 59.99819 * 10 8 7 33 33 H 1.08990 * 109.47519 * 300.00556 * 11 10 8 34 34 H 1.09003 * 109.46792 * 60.00565 * 11 10 8 35 35 H 1.09000 * 109.47740 * 300.00742 * 12 11 10 36 36 H 1.09003 * 109.46747 * 60.00711 * 12 11 10 37 37 H 1.09000 * 109.47138 * 300.00855 * 13 12 11 38 38 H 1.09003 * 109.46865 * 60.00528 * 13 12 11 39 39 H 0.96996 * 120.00260 * 179.97438 * 17 16 14 40 40 H 1.08995 * 113.61125 * 25.43211 * 22 5 2 41 41 H 1.08997 * 113.68852 * 254.54474 * 22 5 2 42 42 H 1.09001 * 113.61607 * 89.12306 * 23 22 5 43 43 H 1.09000 * 113.61257 * 219.93407 * 23 22 5 44 44 H 1.08997 * 113.61639 * 140.02578 * 24 23 22 45 45 H 1.09006 * 113.61181 * 270.92350 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.6838 -0.9871 1.8211 7 7 4.2051 -1.7754 0.7019 8 6 5.5180 -2.0740 0.6416 9 8 6.2680 -1.6895 1.5138 10 6 6.0541 -2.8855 -0.5096 11 6 7.5620 -3.0801 -0.3378 12 6 8.1061 -3.9045 -1.5061 13 6 9.6138 -4.0996 -1.3341 14 6 10.1497 -4.9122 -2.4845 15 1 9.4819 -5.2548 -3.2610 16 6 11.4928 -5.2182 -2.5458 17 7 12.3060 -4.8015 -1.6000 18 14 12.1572 -6.2248 -3.9722 19 1 12.5686 -5.3147 -5.0711 20 1 13.3303 -7.0135 -3.5174 21 1 11.1009 -7.1464 -4.4622 22 6 1.5182 -0.0094 2.7934 23 6 1.2536 -1.3988 3.3970 24 6 1.3037 -1.9480 1.9616 25 1 -0.3634 0.5365 0.8765 26 1 -0.3633 0.4908 -0.9029 27 1 -0.3634 -1.0273 0.0264 28 1 4.2094 -0.0333 1.8697 29 1 3.8355 -1.5333 2.7522 30 1 3.6053 -2.0827 0.0042 31 1 5.5619 -3.8577 -0.5291 32 1 5.8600 -2.3611 -1.4452 33 1 8.0539 -2.1077 -0.3184 34 1 7.7563 -3.6043 0.5979 35 1 7.6141 -4.8769 -1.5251 36 1 7.9117 -3.3806 -2.4420 37 1 10.1062 -3.1274 -1.3149 38 1 9.8079 -4.6237 -0.3982 39 1 13.2507 -5.0171 -1.6429 40 1 0.6104 0.5264 2.5164 41 1 2.2057 0.5986 3.3815 42 1 2.0627 -1.7605 4.0315 43 1 0.2741 -1.4917 3.8661 44 1 1.8192 -2.9048 1.8779 45 1 0.3373 -1.9413 1.4575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588727777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:59 Heat of formation + Delta-G solvation = -133.606218 kcal Electronic energy + Delta-G solvation = -24590.102804 eV Core-core repulsion = 20927.000341 eV Total energy + Delta-G solvation = -3663.102464 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.19926 -39.99320 -38.13673 -37.16506 -36.68867 -35.52833 -34.62011 -31.72769 -30.47170 -29.40500 -27.33381 -26.81714 -25.27218 -23.89521 -21.84701 -21.45720 -20.79348 -19.44184 -18.50667 -18.38866 -17.97247 -17.34704 -16.95888 -16.90444 -16.73142 -16.48170 -15.99355 -15.73128 -14.88850 -14.74894 -14.58117 -14.42042 -14.22941 -13.97074 -13.70691 -13.60776 -13.39113 -13.31671 -13.16538 -13.13410 -13.02771 -12.93942 -12.81240 -12.34251 -12.17850 -12.15481 -11.97377 -11.58571 -11.51010 -11.39479 -11.37990 -11.19369 -10.92898 -10.81909 -10.55195 -10.25016 -8.18762 -6.31006 -1.04923 1.39960 1.42686 1.52994 1.53789 1.71370 2.01328 2.42023 2.58996 2.74068 3.13701 3.19969 3.33992 3.42506 3.78514 3.79180 4.02190 4.05087 4.11361 4.13950 4.28554 4.29863 4.50150 4.62689 4.65332 4.67106 4.70162 4.81410 4.86940 4.93713 5.00467 5.02420 5.14016 5.17059 5.23962 5.31660 5.37401 5.39002 5.56136 5.77287 5.87453 6.25280 6.39081 6.87058 7.13076 7.38395 8.93633 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.002189 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.270088 B =12787.868407 C =13227.818549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.633 4.633 2 S 2.398 3.602 3 O -0.986 6.986 4 O -0.973 6.973 5 C -0.581 4.581 6 C 0.150 3.850 7 N -0.737 5.737 8 C 0.513 3.487 9 O -0.580 6.580 10 C -0.134 4.134 11 C -0.095 4.095 12 C -0.097 4.097 13 C 0.019 3.981 14 C -0.542 4.542 15 H 0.065 0.935 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.971 3.029 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.105 4.105 23 C -0.124 4.124 24 C -0.112 4.112 25 H 0.163 0.837 26 H 0.144 0.856 27 H 0.165 0.835 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.420 0.580 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.058 0.942 37 H -0.016 1.016 38 H -0.013 1.013 39 H 0.263 0.737 40 H 0.129 0.871 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.999 8.532 8.871 38.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.787 4.787 2 S 2.587 3.413 3 O -0.984 6.984 4 O -0.970 6.970 5 C -0.672 4.672 6 C 0.026 3.974 7 N -0.395 5.395 8 C 0.302 3.698 9 O -0.460 6.460 10 C -0.173 4.173 11 C -0.133 4.133 12 C -0.134 4.134 13 C -0.018 4.018 14 C -0.580 4.580 15 H 0.084 0.916 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.795 3.205 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.144 4.144 23 C -0.162 4.162 24 C -0.150 4.150 25 H 0.181 0.819 26 H 0.162 0.838 27 H 0.183 0.817 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.261 0.739 31 H 0.141 0.859 32 H 0.130 0.870 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.002 0.998 38 H 0.005 0.995 39 H 0.072 0.928 40 H 0.147 0.853 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.123 0.877 44 H 0.105 0.895 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -35.691 9.119 8.847 37.885 hybrid contribution 0.708 -0.511 -0.217 0.900 sum -34.983 8.609 8.629 37.046 Atomic orbital electron populations 1.30152 1.19584 1.14746 1.14214 1.08344 0.81370 0.74574 0.77032 1.93545 1.81474 1.36528 1.86813 1.93467 1.81118 1.67090 1.55321 1.31490 1.01993 1.13021 1.20712 1.20841 0.88794 0.96460 0.91331 1.46391 1.09327 1.56192 1.27628 1.21182 0.81825 0.79483 0.87341 1.90687 1.58400 1.54953 1.41966 1.21725 0.96464 1.02052 0.97074 1.21252 0.93879 0.99632 0.98564 1.21459 0.95721 0.99160 0.97075 1.19050 0.92794 0.94588 0.95347 1.21748 0.93926 1.33537 1.08779 0.91636 1.26110 0.97595 0.97468 0.99290 1.70133 1.04541 1.47673 1.35506 0.85359 0.77962 0.78571 0.78600 1.19762 1.20788 1.18303 1.22940 1.00884 0.98086 0.92444 1.22779 1.04068 0.93882 0.95491 1.23156 0.98805 0.94390 0.98602 0.81935 0.83814 0.81693 0.91775 0.89054 0.73865 0.85933 0.87047 0.93902 0.93280 0.91858 0.92342 0.99784 0.99476 0.92822 0.85255 0.89631 0.90396 0.87743 0.89540 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.09 9.51 113.37 1.08 0.99 16 2 S 2.40 31.16 4.89 -56.49 -0.28 30.88 16 3 O -0.99 -22.65 18.10 -127.37 -2.30 -24.95 16 4 O -0.97 -19.06 15.57 -127.37 -1.98 -21.04 16 5 C -0.58 -5.61 1.02 -10.17 -0.01 -5.62 16 6 C 0.15 2.84 5.00 86.38 0.43 3.28 16 7 N -0.74 -17.06 5.17 -463.05 -2.39 -19.46 16 8 C 0.51 16.01 7.83 87.66 0.69 16.70 16 9 O -0.58 -23.09 15.98 -3.05 -0.05 -23.14 16 10 C -0.13 -3.92 5.70 29.85 0.17 -3.75 16 11 C -0.10 -3.73 4.50 30.59 0.14 -3.59 16 12 C -0.10 -4.21 5.15 30.59 0.16 -4.05 16 13 C 0.02 1.10 4.97 29.85 0.15 1.25 16 14 C -0.54 -32.38 9.11 25.60 0.23 -32.15 16 15 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 16 C -0.01 -0.46 5.46 84.66 0.46 0.01 16 17 N -0.94 -60.26 13.29 21.45 0.28 -59.97 16 18 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 22 C -0.11 -0.42 7.10 31.12 0.22 -0.20 16 23 C -0.12 -0.32 7.72 31.12 0.24 -0.08 16 24 C -0.11 -0.34 7.10 31.21 0.22 -0.12 16 25 H 0.16 -0.91 6.49 -2.39 -0.02 -0.93 16 26 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 27 H 0.17 -0.92 6.60 -2.39 -0.02 -0.94 16 28 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.09 1.66 7.32 -2.38 -0.02 1.64 16 30 H 0.42 8.20 6.01 -92.71 -0.56 7.64 16 31 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 34 H 0.05 2.04 8.10 -2.39 -0.02 2.02 16 35 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 38 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 39 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 40 H 0.13 -0.37 6.27 -2.39 -0.01 -0.39 16 41 H 0.08 0.54 8.10 -2.39 -0.02 0.52 16 42 H 0.08 0.44 7.62 -2.39 -0.02 0.42 16 43 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.09 0.45 8.11 -2.39 -0.02 0.43 16 45 H 0.13 -0.61 5.76 -2.38 -0.01 -0.62 16 Total: -1.00 -91.58 371.84 -0.09 -91.68 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.42 Total: 5.44 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 4.18 Total: -27.33 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.11 Total: -79.43 kcal Atomic # 8 Polarization: -64.80 SS G_CDS: -4.34 Total: -69.14 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 31.16 SS G_CDS: -0.28 Total: 30.88 kcal Total: -91.58 -0.09 -91.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588727777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.928 kcal (2) G-P(sol) polarization free energy of solvation -91.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds