Wall clock time and date at job start Tue Mar 31 2020 11:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36463 * 126.36687 * 2 1 4 4 O 1.35311 * 125.02861 * 359.97410 * 3 2 1 5 5 N 1.30708 * 109.94218 * 179.70156 * 3 2 1 6 6 C 1.36024 * 109.62276 * 0.26634 * 5 3 2 7 7 C 1.39703 * 133.37432 * 179.97438 * 6 5 3 8 8 C 1.36596 * 119.98881 * 180.02562 * 7 6 5 9 9 C 1.39274 * 120.57605 * 0.04705 * 8 7 6 10 10 N 1.40087 * 119.86570 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00342 * 144.85900 * 10 9 8 12 12 O 1.21292 * 119.99773 * 4.61040 * 11 10 9 13 13 C 1.50698 * 120.00018 * 184.60506 * 11 10 9 14 14 C 1.52996 * 109.47145 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47446 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47471 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47170 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00218 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99949 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99883 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00069 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46893 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46778 * 119.99927 * 21 19 17 24 24 H 1.48497 * 109.47253 * 239.99866 * 21 19 17 25 25 C 1.38548 * 120.27315 * 359.95394 * 9 8 7 26 26 C 1.38434 * 126.37219 * 180.15536 * 2 1 3 27 27 H 1.09006 * 109.47286 * 90.02388 * 1 2 3 28 28 H 1.09001 * 109.47266 * 210.01963 * 1 2 3 29 29 H 1.09003 * 109.47320 * 330.02328 * 1 2 3 30 30 H 0.96709 * 113.99461 * 269.71345 * 4 3 2 31 31 H 1.08007 * 120.00576 * 0.04996 * 7 6 5 32 32 H 1.08001 * 119.71599 * 180.02562 * 8 7 6 33 33 H 0.97007 * 119.99710 * 324.85955 * 10 9 8 34 34 H 1.09008 * 109.47267 * 299.99834 * 13 11 10 35 35 H 1.08999 * 109.47345 * 60.00113 * 13 11 10 36 36 H 1.08999 * 109.47245 * 299.99945 * 14 13 11 37 37 H 1.08999 * 109.47532 * 60.00059 * 14 13 11 38 38 H 1.08999 * 109.47048 * 300.00305 * 15 14 13 39 39 H 1.09007 * 109.46893 * 60.00176 * 15 14 13 40 40 H 1.09000 * 109.47114 * 300.00682 * 16 15 14 41 41 H 1.08999 * 109.46784 * 60.00144 * 16 15 14 42 42 H 0.97007 * 119.99887 * 180.02562 * 20 19 17 43 43 H 1.08006 * 120.16881 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2741 1.0989 0.0000 4 8 1.8424 2.3813 -0.0005 5 7 3.5278 0.7293 0.0064 6 6 3.6037 -0.6288 0.0050 7 6 4.6712 -1.5301 0.0091 8 6 4.4296 -2.8745 0.0056 9 6 3.1241 -3.3597 -0.0032 10 7 2.8935 -4.7415 -0.0073 11 6 1.8371 -5.2504 0.6572 12 8 1.0395 -4.5070 1.1885 13 6 1.6470 -6.7431 0.7400 14 6 0.3819 -7.0522 1.5429 15 6 0.1884 -8.5677 1.6264 16 6 -1.0764 -8.8769 2.4299 17 6 -1.2666 -10.3695 2.5127 18 1 -0.5566 -11.0315 2.0392 19 6 -2.3475 -10.8902 3.1920 20 7 -3.2124 -10.0841 3.7681 21 14 -2.5837 -12.7404 3.2940 22 1 -1.4806 -13.4208 2.5692 23 1 -2.5745 -13.1627 4.7177 24 1 -3.8833 -13.1083 2.6769 25 6 2.0526 -2.4815 -0.0075 26 6 2.2859 -1.1146 -0.0030 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5141 29 1 -0.3634 0.8902 0.5135 30 1 1.7215 2.7551 -0.8842 31 1 5.6872 -1.1639 0.0156 32 1 5.2581 -3.5673 0.0093 33 1 3.4942 -5.3320 -0.4884 34 1 1.5482 -7.1531 -0.2652 35 1 2.5092 -7.1925 1.2326 36 1 0.4802 -6.6422 2.5480 37 1 -0.4803 -6.6030 1.0499 38 1 0.0899 -8.9773 0.6212 39 1 1.0504 -9.0174 2.1192 40 1 -0.9775 -8.4672 3.4351 41 1 -1.9386 -8.4272 1.9375 42 1 -3.9727 -10.4504 4.2464 43 1 1.0409 -2.8596 -0.0147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588731405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:43 Heat of formation + Delta-G solvation = -11.910132 kcal Electronic energy + Delta-G solvation = -24889.101195 eV Core-core repulsion = 21128.124670 eV Total energy + Delta-G solvation = -3760.976526 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.44488 -40.38701 -38.39261 -37.02606 -35.04226 -34.74402 -33.90965 -32.65357 -30.74921 -29.96962 -28.24924 -27.32302 -25.68277 -23.70530 -22.85282 -21.92695 -21.28071 -20.33208 -20.03934 -18.88857 -18.29652 -17.53546 -16.80467 -16.63183 -16.18668 -16.00151 -15.55484 -14.99409 -14.57467 -14.49358 -14.35306 -14.06620 -13.86625 -13.53524 -13.47652 -13.04227 -12.66898 -12.46879 -12.28655 -12.07916 -11.82422 -11.71157 -11.63359 -11.02686 -10.74710 -10.59867 -10.51490 -10.46352 -10.37230 -10.09031 -9.76941 -9.65043 -9.26695 -9.00705 -8.57531 -8.33235 -7.93976 -5.97831 -4.00311 0.59171 1.17825 1.91302 2.20393 2.58953 2.89833 3.31400 3.32004 3.38752 3.42536 3.58943 4.13136 4.37645 4.46807 4.67670 4.75720 4.77380 4.97509 4.99293 5.04388 5.13010 5.23097 5.27575 5.35926 5.37761 5.70814 5.75414 5.90662 5.99787 6.07114 6.10845 6.23331 6.24507 6.28957 6.48061 6.65535 6.78275 6.96015 7.14051 7.15783 7.22344 7.46907 7.71460 7.86525 8.02355 8.03824 8.45142 9.07627 9.63556 11.13491 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025809 B = 0.001977 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.637704 B =14156.819968 C =15087.040909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.494 5.494 3 C 0.443 3.557 4 O -0.442 6.442 5 N -0.484 5.484 6 C 0.039 3.961 7 C -0.046 4.046 8 C -0.142 4.142 9 C 0.165 3.835 10 N -0.677 5.677 11 C 0.512 3.488 12 O -0.516 6.516 13 C -0.137 4.137 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.055 0.945 19 C 0.054 3.946 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.114 4.114 26 C 0.076 3.924 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.407 0.593 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.413 0.587 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.015 0.985 42 H 0.259 0.741 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.310 21.173 -13.219 28.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.196 5.196 3 C 0.140 3.860 4 O -0.243 6.243 5 N -0.215 5.215 6 C -0.079 4.079 7 C -0.066 4.066 8 C -0.164 4.164 9 C 0.068 3.932 10 N -0.323 5.323 11 C 0.301 3.699 12 O -0.390 6.390 13 C -0.177 4.177 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.137 4.137 26 C -0.033 4.033 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.265 0.735 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.250 0.750 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 14.070 22.246 -12.089 28.965 hybrid contribution -0.852 -1.529 -0.561 1.838 sum 13.218 20.717 -12.650 27.640 Atomic orbital electron populations 1.22043 0.75742 1.05414 1.03579 1.45565 1.07571 1.05069 1.61409 1.20314 0.84089 0.81142 1.00489 1.84824 1.86550 1.18551 1.34392 1.70640 1.15493 1.11605 1.23759 1.18768 0.92372 0.89213 1.07594 1.19756 0.97510 0.90592 0.98751 1.20451 0.95157 0.95327 1.05480 1.17308 0.92603 0.83126 1.00133 1.43716 1.30420 1.05379 1.52814 1.21370 0.79758 0.92232 0.76545 1.90698 1.42391 1.61151 1.44767 1.21825 1.02535 0.89634 1.03695 1.21473 0.94565 0.98456 0.99712 1.21652 1.00796 0.91919 1.00442 1.19100 0.91465 0.96220 0.94991 1.21316 1.08921 0.92282 1.33291 0.92671 1.25052 0.96075 0.97862 0.95657 1.69985 1.13674 1.34345 1.35455 0.86551 0.77977 0.85832 0.77718 1.19764 1.21048 1.21057 1.19941 1.00465 0.88059 1.05262 1.18396 0.90543 0.88550 1.05848 0.90622 0.89013 0.89095 0.73501 0.84641 0.84651 0.75036 0.88694 0.88614 0.91689 0.91762 0.93399 0.93376 0.96584 0.96617 0.93090 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 11.12 59.84 0.67 1.19 16 2 N -0.49 -5.20 3.23 -123.35 -0.40 -5.60 16 3 C 0.44 4.80 8.99 -88.89 -0.80 4.00 16 4 O -0.44 -3.35 13.52 -17.62 -0.24 -3.58 16 5 N -0.48 -6.27 11.31 -12.20 -0.14 -6.41 16 6 C 0.04 0.48 7.22 -84.63 -0.61 -0.13 16 7 C -0.05 -0.46 10.04 -39.63 -0.40 -0.86 16 8 C -0.14 -1.26 9.88 -39.79 -0.39 -1.65 16 9 C 0.16 1.77 6.30 -83.58 -0.53 1.25 16 10 N -0.68 -6.35 5.34 -9.80 -0.05 -6.40 16 11 C 0.51 6.45 7.67 -10.99 -0.08 6.37 16 12 O -0.52 -8.53 13.41 5.55 0.07 -8.46 16 13 C -0.14 -1.62 5.70 -27.89 -0.16 -1.78 16 14 C -0.10 -1.74 4.50 -26.73 -0.12 -1.86 16 15 C -0.11 -2.19 5.15 -26.73 -0.14 -2.32 16 16 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 17 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 21 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C -0.11 -1.41 8.69 -39.31 -0.34 -1.75 16 26 C 0.08 0.93 6.87 -83.89 -0.58 0.35 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.41 0.79 9.06 45.56 0.41 1.20 16 31 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.41 2.33 8.82 -40.82 -0.36 1.97 16 34 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 37 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 43 H 0.14 1.93 6.22 -52.48 -0.33 1.61 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -37.54 368.36 -8.82 -46.37 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.31 Total: -1.16 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -4.03 Total: -10.45 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.15 Total: -44.96 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.16 Total: -12.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.54 -8.82 -46.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588731405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.456 kcal (2) G-P(sol) polarization free energy of solvation -37.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds