Wall clock time and date at job start Tue Mar 31 2020 11:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36463 * 126.36687 * 2 1 4 4 O 1.35311 * 125.02861 * 359.97410 * 3 2 1 5 5 N 1.30708 * 109.94218 * 179.70156 * 3 2 1 6 6 C 1.36024 * 109.62276 * 0.26634 * 5 3 2 7 7 C 1.39703 * 133.37432 * 179.97438 * 6 5 3 8 8 C 1.36596 * 119.98881 * 180.02562 * 7 6 5 9 9 C 1.39274 * 120.57605 * 0.04705 * 8 7 6 10 10 N 1.40087 * 119.86570 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00342 * 144.85900 * 10 9 8 12 12 O 1.21292 * 119.99773 * 4.61040 * 11 10 9 13 13 C 1.50698 * 120.00018 * 184.60506 * 11 10 9 14 14 C 1.52996 * 109.47145 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47446 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47471 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47170 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00218 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99949 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99883 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00069 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46893 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46778 * 119.99927 * 21 19 17 24 24 H 1.48497 * 109.47253 * 239.99866 * 21 19 17 25 25 C 1.38548 * 120.27315 * 359.95394 * 9 8 7 26 26 C 1.38434 * 126.37219 * 180.15536 * 2 1 3 27 27 H 1.09006 * 109.47286 * 90.02388 * 1 2 3 28 28 H 1.09001 * 109.47266 * 210.01963 * 1 2 3 29 29 H 1.09003 * 109.47320 * 330.02328 * 1 2 3 30 30 H 0.96709 * 113.99461 * 269.71345 * 4 3 2 31 31 H 1.08007 * 120.00576 * 0.04996 * 7 6 5 32 32 H 1.08001 * 119.71599 * 180.02562 * 8 7 6 33 33 H 0.97007 * 119.99710 * 324.85955 * 10 9 8 34 34 H 1.09008 * 109.47267 * 299.99834 * 13 11 10 35 35 H 1.08999 * 109.47345 * 60.00113 * 13 11 10 36 36 H 1.08999 * 109.47245 * 299.99945 * 14 13 11 37 37 H 1.08999 * 109.47532 * 60.00059 * 14 13 11 38 38 H 1.08999 * 109.47048 * 300.00305 * 15 14 13 39 39 H 1.09007 * 109.46893 * 60.00176 * 15 14 13 40 40 H 1.09000 * 109.47114 * 300.00682 * 16 15 14 41 41 H 1.08999 * 109.46784 * 60.00144 * 16 15 14 42 42 H 0.97007 * 119.99887 * 180.02562 * 20 19 17 43 43 H 1.08006 * 120.16881 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2741 1.0989 0.0000 4 8 1.8424 2.3813 -0.0005 5 7 3.5278 0.7293 0.0064 6 6 3.6037 -0.6288 0.0050 7 6 4.6712 -1.5301 0.0091 8 6 4.4296 -2.8745 0.0056 9 6 3.1241 -3.3597 -0.0032 10 7 2.8935 -4.7415 -0.0073 11 6 1.8371 -5.2504 0.6572 12 8 1.0395 -4.5070 1.1885 13 6 1.6470 -6.7431 0.7400 14 6 0.3819 -7.0522 1.5429 15 6 0.1884 -8.5677 1.6264 16 6 -1.0764 -8.8769 2.4299 17 6 -1.2666 -10.3695 2.5127 18 1 -0.5566 -11.0315 2.0392 19 6 -2.3475 -10.8902 3.1920 20 7 -3.2124 -10.0841 3.7681 21 14 -2.5837 -12.7404 3.2940 22 1 -1.4806 -13.4208 2.5692 23 1 -2.5745 -13.1627 4.7177 24 1 -3.8833 -13.1083 2.6769 25 6 2.0526 -2.4815 -0.0075 26 6 2.2859 -1.1146 -0.0030 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5141 29 1 -0.3634 0.8902 0.5135 30 1 1.7215 2.7551 -0.8842 31 1 5.6872 -1.1639 0.0156 32 1 5.2581 -3.5673 0.0093 33 1 3.4942 -5.3320 -0.4884 34 1 1.5482 -7.1531 -0.2652 35 1 2.5092 -7.1925 1.2326 36 1 0.4802 -6.6422 2.5480 37 1 -0.4803 -6.6030 1.0499 38 1 0.0899 -8.9773 0.6212 39 1 1.0504 -9.0174 2.1192 40 1 -0.9775 -8.4672 3.4351 41 1 -1.9386 -8.4272 1.9375 42 1 -3.9727 -10.4504 4.2464 43 1 1.0409 -2.8596 -0.0147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588731405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:43 Heat of formation + Delta-G solvation = -40.464690 kcal Electronic energy + Delta-G solvation = -24890.339414 eV Core-core repulsion = 21128.124670 eV Total energy + Delta-G solvation = -3762.214744 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.23290 -41.32581 -39.14907 -37.80675 -36.60802 -35.60753 -34.80711 -34.54266 -31.75529 -31.31777 -29.28115 -28.00674 -27.32933 -24.82837 -23.99357 -23.06030 -22.07601 -21.73286 -21.23742 -19.60552 -19.10036 -18.40742 -18.34059 -17.67654 -17.40185 -16.99943 -16.55063 -16.39594 -15.81079 -15.58479 -15.23848 -15.01594 -14.94730 -14.55065 -14.25965 -14.17859 -13.79459 -13.63560 -13.57638 -13.27857 -13.02788 -12.91242 -12.83714 -12.57618 -12.30978 -12.13835 -12.11621 -11.51347 -11.36272 -11.35592 -11.23999 -11.10408 -10.92569 -10.64200 -10.55309 -9.34948 -8.77488 -8.18658 -6.30395 -0.20838 0.39508 1.20036 1.35642 1.40877 1.41499 1.54996 1.68952 2.05864 2.42131 2.64792 2.78809 3.14334 3.37087 3.70097 3.81088 4.00027 4.05227 4.17498 4.21014 4.25529 4.27261 4.36647 4.55771 4.57747 4.69281 4.71494 4.87162 4.89370 4.97585 5.17430 5.21019 5.23747 5.32158 5.35433 5.40282 5.47773 5.58882 5.67501 5.79968 5.85760 5.89631 6.26106 6.45079 6.55801 6.65827 6.88809 7.16415 7.39305 8.93683 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025809 B = 0.001977 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.637704 B =14156.819968 C =15087.040909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.497 5.497 3 C 0.446 3.554 4 O -0.442 6.442 5 N -0.517 5.517 6 C 0.018 3.982 7 C -0.051 4.051 8 C -0.127 4.127 9 C 0.156 3.844 10 N -0.655 5.655 11 C 0.512 3.488 12 O -0.565 6.565 13 C -0.124 4.124 14 C -0.097 4.097 15 C -0.096 4.096 16 C 0.017 3.983 17 C -0.539 4.539 18 H 0.067 0.933 19 C -0.009 4.009 20 N -0.938 5.938 21 Si 0.969 3.031 22 H -0.256 1.256 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.132 4.132 26 C 0.054 3.946 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.431 0.569 31 H 0.157 0.843 32 H 0.175 0.825 33 H 0.434 0.566 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.061 0.939 40 H -0.017 1.017 41 H -0.015 1.015 42 H 0.262 0.738 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.566 19.949 -14.644 29.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.199 5.199 3 C 0.143 3.857 4 O -0.247 6.247 5 N -0.249 5.249 6 C -0.100 4.100 7 C -0.071 4.071 8 C -0.148 4.148 9 C 0.059 3.941 10 N -0.303 5.303 11 C 0.302 3.698 12 O -0.442 6.442 13 C -0.164 4.164 14 C -0.135 4.135 15 C -0.134 4.134 16 C -0.020 4.020 17 C -0.577 4.577 18 H 0.085 0.915 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.180 1.180 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.156 4.156 26 C -0.055 4.055 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.294 0.706 31 H 0.175 0.825 32 H 0.192 0.808 33 H 0.275 0.725 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.071 0.929 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.359 21.025 -13.572 29.898 hybrid contribution -1.599 -1.036 -0.118 1.909 sum 14.759 19.989 -13.690 28.369 Atomic orbital electron populations 1.22227 0.74174 1.05562 1.05007 1.45764 1.08574 1.04654 1.60946 1.20437 0.83925 0.82043 0.99288 1.84787 1.86233 1.17015 1.36624 1.70606 1.16710 1.12014 1.25524 1.19229 0.93179 0.89490 1.08094 1.20123 0.97984 0.90775 0.98198 1.20769 0.95172 0.95487 1.03412 1.17520 0.93109 0.83339 1.00117 1.43450 1.29697 1.05241 1.51888 1.21489 0.79812 0.92333 0.76194 1.90704 1.44309 1.62175 1.47049 1.21693 1.00601 0.89335 1.04745 1.21258 0.96865 0.96024 0.99387 1.21448 0.97783 0.94086 1.00042 1.19071 0.93665 0.95219 0.94026 1.21801 1.09232 0.93488 1.33181 0.91479 1.26100 0.95756 1.03538 0.95173 1.70140 1.14411 1.36939 1.36408 0.85341 0.78376 0.79048 0.77924 1.17992 1.20614 1.20547 1.19921 1.00225 0.88627 1.06785 1.18574 0.91204 0.88901 1.06808 0.88565 0.90314 0.87432 0.70643 0.82523 0.80809 0.72502 0.85542 0.85647 0.93932 0.93699 0.91859 0.91979 0.99814 0.99706 0.92912 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 11.12 127.77 1.42 2.45 16 2 N -0.50 -10.68 3.23 -655.01 -2.11 -12.80 16 3 C 0.45 9.64 8.99 179.74 1.62 11.25 16 4 O -0.44 -6.30 13.52 -85.98 -1.16 -7.46 16 5 N -0.52 -13.39 11.31 -306.34 -3.46 -16.85 16 6 C 0.02 0.45 7.22 39.39 0.28 0.74 16 7 C -0.05 -0.94 10.04 22.24 0.22 -0.71 16 8 C -0.13 -1.92 9.88 22.13 0.22 -1.71 16 9 C 0.16 3.15 6.30 38.14 0.24 3.39 16 10 N -0.66 -10.80 5.34 -303.31 -1.62 -12.42 16 11 C 0.51 12.30 7.67 87.66 0.67 12.97 16 12 O -0.56 -19.23 13.41 -3.07 -0.04 -19.27 16 13 C -0.12 -2.62 5.70 29.85 0.17 -2.45 16 14 C -0.10 -3.26 4.50 30.59 0.14 -3.12 16 15 C -0.10 -3.73 5.15 30.59 0.16 -3.58 16 16 C 0.02 0.93 4.97 29.85 0.15 1.08 16 17 C -0.54 -30.80 9.11 25.60 0.23 -30.57 16 18 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 19 C -0.01 -0.51 5.46 84.66 0.46 -0.04 16 20 N -0.94 -58.66 13.29 21.45 0.28 -58.38 16 21 Si 0.97 44.41 29.54 68.60 2.03 46.43 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 C -0.13 -3.36 8.69 22.45 0.19 -3.16 16 26 C 0.05 1.37 6.87 38.74 0.27 1.64 16 27 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.11 1.14 8.13 -2.39 -0.02 1.13 16 30 H 0.43 1.10 9.06 -74.05 -0.67 0.43 16 31 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.43 3.25 8.82 -92.70 -0.82 2.43 16 34 H 0.13 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 37 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 40 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 41 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 42 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 43 H 0.12 3.58 6.22 -2.91 -0.02 3.56 16 Total: -1.00 -85.60 368.36 -0.08 -85.68 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -0.44 Total: 6.88 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 6.45 Total: -11.82 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -6.91 Total: -100.44 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -1.20 Total: -26.73 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -85.60 -0.08 -85.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588731405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.218 kcal (2) G-P(sol) polarization free energy of solvation -85.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds