Wall clock time and date at job start Tue Mar 31 2020 11:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99900 * 2 1 4 4 C 1.53001 * 109.46749 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47122 * 179.97438 * 4 3 2 6 6 N 1.40006 * 125.95514 * 270.05931 * 5 4 3 7 7 C 1.30124 * 109.78805 * 179.97438 * 6 5 4 8 8 C 1.41626 * 108.67047 * 359.97438 * 7 6 5 9 9 C 1.40142 * 133.48769 * 179.97438 * 8 7 6 10 10 C 1.36248 * 119.93446 * 180.02562 * 9 8 7 11 11 C 1.39589 * 120.62076 * 359.97438 * 10 9 8 12 12 N 1.39904 * 119.77947 * 179.97438 * 11 10 9 13 13 C 1.34783 * 120.00096 * 213.61088 * 12 11 10 14 14 O 1.21288 * 119.99795 * 5.28611 * 13 12 11 15 15 C 1.50699 * 120.00067 * 185.27989 * 13 12 11 16 16 C 1.52995 * 109.47323 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47323 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99815 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99842 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99879 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00297 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47231 * 89.99948 * 21 19 17 23 23 H 1.48505 * 109.47227 * 210.00155 * 21 19 17 24 24 H 1.48507 * 109.47029 * 330.00004 * 21 19 17 25 25 C 1.38229 * 120.44151 * 0.02562 * 11 10 9 26 26 C 1.37175 * 125.94703 * 89.99889 * 5 4 3 27 27 H 1.08999 * 109.47166 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46948 * 299.99898 * 1 2 3 29 29 H 1.08998 * 109.47540 * 60.00163 * 1 2 3 30 30 H 1.08998 * 109.46960 * 60.00507 * 3 2 1 31 31 H 1.08998 * 109.47015 * 299.99942 * 3 2 1 32 32 H 1.09006 * 109.47191 * 59.99991 * 4 3 2 33 33 H 1.08998 * 109.47409 * 299.99816 * 4 3 2 34 34 H 1.07998 * 125.66613 * 180.26581 * 7 6 5 35 35 H 1.08007 * 120.03191 * 0.02562 * 9 8 7 36 36 H 1.07999 * 119.69011 * 179.97438 * 10 9 8 37 37 H 0.96998 * 120.00385 * 33.62007 * 12 11 10 38 38 H 1.09001 * 109.47408 * 300.00541 * 15 13 12 39 39 H 1.08996 * 109.46955 * 60.00063 * 15 13 12 40 40 H 1.09001 * 109.47040 * 300.00423 * 16 15 13 41 41 H 1.09009 * 109.46749 * 59.99706 * 16 15 13 42 42 H 0.97000 * 120.00263 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.16909 * 179.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1314 2.5229 0.0000 6 7 4.4651 3.2737 -1.1336 7 6 4.9732 4.4157 -0.7718 8 6 4.9983 4.4729 0.6430 9 6 5.4288 5.4397 1.5617 10 6 5.3229 5.2016 2.8990 11 6 4.7876 4.0004 3.3672 12 7 4.6875 3.7742 4.7442 13 6 4.8398 2.5282 5.2352 14 8 5.1579 1.6201 4.4969 15 6 4.6148 2.2636 6.7017 16 6 4.8517 0.7807 6.9945 17 6 4.6274 0.5162 8.4611 18 1 4.3446 1.3249 9.1185 19 6 4.7843 -0.7581 8.9636 20 7 4.5880 -0.9891 10.2433 21 14 5.2755 -2.1566 7.8267 22 1 6.7561 -2.2603 7.7807 23 1 4.7056 -3.4306 8.3342 24 1 4.7552 -1.8907 6.4614 25 6 4.3566 3.0326 2.4793 26 6 4.4585 3.2593 1.1102 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8574 0.6435 -0.8891 33 1 3.8567 0.6439 0.8908 34 1 5.3144 5.1929 -1.4396 35 1 5.8441 6.3726 1.2099 36 1 5.6562 5.9492 3.6035 37 1 4.5085 4.5139 5.3455 38 1 5.3079 2.8650 7.2900 39 1 3.5907 2.5273 6.9655 40 1 4.1589 0.1790 6.4062 41 1 5.8761 0.5174 6.7307 42 1 4.6987 -1.8855 10.5969 43 1 3.9435 2.1046 2.8464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589696748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:58 Heat of formation + Delta-G solvation = -16.828820 kcal Electronic energy + Delta-G solvation = -25648.055210 eV Core-core repulsion = 21886.865394 eV Total energy + Delta-G solvation = -3761.189816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.54976 -41.19989 -39.14604 -38.30530 -35.63184 -35.47288 -34.80258 -33.34962 -31.88855 -30.19125 -29.63717 -27.94479 -27.23863 -24.74376 -24.57876 -23.28607 -22.54271 -21.62824 -21.18171 -19.32439 -18.86036 -18.25912 -17.66461 -17.44668 -17.23311 -16.87892 -16.62466 -16.38396 -16.25841 -15.59307 -15.50441 -15.18628 -15.08073 -14.72136 -14.61344 -14.34637 -14.27009 -13.55837 -13.44890 -13.43321 -13.00390 -12.88585 -12.74120 -12.46073 -12.25391 -12.14132 -12.00115 -11.85108 -11.78920 -11.41754 -11.23184 -11.14791 -10.88418 -10.79655 -10.76271 -9.12850 -8.91938 -8.33048 -6.35566 -0.15758 0.49767 1.15843 1.30894 1.33641 1.37039 1.47522 1.73276 2.05011 2.32748 2.73397 2.83162 3.02985 3.38235 3.58018 3.77093 3.83458 3.92003 3.99707 4.05154 4.18328 4.24330 4.35223 4.37826 4.39284 4.45829 4.48245 4.51270 4.56612 4.70104 4.73480 4.92816 5.00637 5.23618 5.27174 5.33819 5.41620 5.44292 5.56864 5.59589 5.81469 5.94247 6.01432 6.21578 6.43173 6.61037 6.71267 7.14116 7.29921 8.82530 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011135 B = 0.003444 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.098796 B = 8129.025602 C = 9967.091564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.059 3.941 4 C 0.145 3.855 5 N -0.414 5.414 6 N -0.287 5.287 7 C 0.092 3.908 8 C -0.209 4.209 9 C -0.006 4.006 10 C -0.176 4.176 11 C 0.193 3.807 12 N -0.660 5.660 13 C 0.514 3.486 14 O -0.561 6.561 15 C -0.113 4.113 16 C 0.003 3.997 17 C -0.527 4.527 18 H 0.054 0.946 19 C 0.016 3.984 20 N -0.942 5.942 21 Si 0.934 3.066 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.264 1.264 25 C -0.182 4.182 26 C 0.125 3.875 27 H 0.104 0.896 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.237 0.763 35 H 0.178 0.822 36 H 0.166 0.834 37 H 0.433 0.567 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.008 0.992 41 H 0.009 0.991 42 H 0.267 0.733 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 16.908 -23.469 29.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.019 4.019 4 C 0.023 3.977 5 N -0.202 5.202 6 N -0.100 5.100 7 C -0.103 4.103 8 C -0.217 4.217 9 C -0.026 4.026 10 C -0.197 4.197 11 C 0.095 3.905 12 N -0.308 5.308 13 C 0.304 3.696 14 O -0.438 6.438 15 C -0.153 4.153 16 C -0.035 4.035 17 C -0.565 4.565 18 H 0.072 0.928 19 C -0.182 4.182 20 N -0.583 5.583 21 Si 0.759 3.241 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.207 4.207 26 C 0.009 3.991 27 H 0.122 0.878 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.253 0.747 35 H 0.196 0.804 36 H 0.184 0.816 37 H 0.273 0.727 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.076 0.924 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.353 14.988 -24.794 29.166 hybrid contribution -0.076 -0.482 1.116 1.218 sum -3.429 14.506 -23.678 27.979 Atomic orbital electron populations 1.22993 0.78584 1.04366 1.01006 1.87787 1.22229 1.27092 1.95628 1.22691 0.92931 0.85305 1.00999 1.21227 0.91945 0.79313 1.05252 1.48253 1.54918 1.15416 1.01652 1.76655 1.18122 1.06051 1.09125 1.24635 0.96593 0.95487 0.93616 1.19312 1.11397 0.96193 0.94814 1.20639 0.93444 0.98004 0.90548 1.20801 1.04575 0.97143 0.97183 1.17753 0.94905 0.94913 0.82932 1.43573 1.70553 1.10722 1.05902 1.21532 0.74503 0.81830 0.91701 1.90684 1.46459 1.45203 1.61454 1.21526 1.05221 0.99169 0.89373 1.19240 0.96285 0.93376 0.94554 1.21411 1.46350 0.95215 0.93532 0.92754 1.25753 0.94952 1.01384 0.96132 1.70010 1.51449 1.22600 1.14220 0.85896 0.79208 0.79061 0.79934 1.19419 1.20416 1.18810 1.19813 1.09325 1.01899 0.89649 1.18864 0.98241 0.92925 0.89026 0.87813 0.93613 0.92422 0.93696 0.91760 0.87307 0.89655 0.74666 0.80439 0.81623 0.72665 0.86948 0.87251 0.97317 0.97271 0.92374 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -9.87 10.70 -148.98 -1.59 -11.46 16 3 C 0.06 1.36 6.26 71.98 0.45 1.81 16 4 C 0.14 3.65 6.79 86.38 0.59 4.24 16 5 N -0.41 -11.13 3.67 -339.65 -1.25 -12.37 16 6 N -0.29 -6.89 12.44 -56.21 -0.70 -7.59 16 7 C 0.09 1.62 12.05 85.78 1.03 2.65 16 8 C -0.21 -4.33 6.17 -21.35 -0.13 -4.46 16 9 C -0.01 -0.08 10.05 22.27 0.22 0.14 16 10 C -0.18 -2.93 9.87 22.13 0.22 -2.71 16 11 C 0.19 4.80 6.28 38.18 0.24 5.04 16 12 N -0.66 -15.80 5.33 -303.45 -1.62 -17.42 16 13 C 0.51 17.40 7.56 87.66 0.66 18.06 16 14 O -0.56 -24.15 13.67 -3.05 -0.04 -24.19 16 15 C -0.11 -4.00 5.64 29.85 0.17 -3.83 16 16 C 0.00 0.17 3.33 29.85 0.10 0.27 16 17 C -0.53 -29.79 9.66 25.60 0.25 -29.54 16 18 H 0.05 3.20 7.99 -2.91 -0.02 3.18 16 19 C 0.02 0.92 5.47 84.65 0.46 1.39 16 20 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 21 Si 0.93 46.71 27.47 68.60 1.88 48.59 16 22 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.26 -13.18 6.54 99.48 0.65 -12.53 16 25 C -0.18 -5.53 8.62 22.49 0.19 -5.34 16 26 C 0.13 3.47 6.88 39.15 0.27 3.74 16 27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.11 2.49 8.14 -2.38 -0.02 2.48 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.24 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.43 6.57 8.82 -92.71 -0.82 5.75 16 38 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 40 H 0.01 0.43 7.16 -2.39 -0.02 0.42 16 41 H 0.01 0.45 7.53 -2.38 -0.02 0.43 16 42 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.11 3.85 6.40 -2.91 -0.02 3.84 16 Total: -1.00 -80.60 367.28 3.11 -77.49 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.15 Total: 12.05 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.97 Total: -6.86 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -3.27 Total: -95.62 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.64 Total: -35.65 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.88 Total: 48.59 kcal Total: -80.60 3.11 -77.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589696748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.657 kcal (2) G-P(sol) polarization free energy of solvation -80.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds