Wall clock time and date at job start Tue Mar 31 2020 11:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35994 * 117.00167 * 2 1 4 4 C 1.39383 * 119.82269 * 0.02562 * 3 2 1 5 5 C 1.36522 * 120.75650 * 180.02562 * 4 3 2 6 6 C 1.39285 * 120.06496 * 0.02562 * 5 4 3 7 7 N 1.37262 * 133.62388 * 180.02562 * 6 5 4 8 8 H 0.96998 * 125.41940 * 359.96963 * 7 6 5 9 9 N 1.39855 * 109.16571 * 179.73438 * 7 6 5 10 10 C 1.30642 * 110.03830 * 0.37877 * 9 7 6 11 11 N 1.39963 * 126.15994 * 179.90570 * 10 9 7 12 12 C 1.34773 * 120.00192 * 359.67681 * 11 10 9 13 13 O 1.21303 * 120.00079 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00373 * 179.72981 * 12 11 10 15 15 C 1.53004 * 109.47535 * 180.27843 * 14 12 11 16 16 C 1.52997 * 109.47000 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.47000 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47211 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99761 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99724 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00509 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 89.99876 * 22 20 18 24 24 H 1.48499 * 109.47352 * 210.00030 * 22 20 18 25 25 H 1.48501 * 109.46810 * 330.00491 * 22 20 18 26 26 C 1.40716 * 119.58895 * 359.97438 * 6 5 4 27 27 C 1.37913 * 119.82606 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47007 * 60.00609 * 1 2 3 29 29 H 1.08998 * 109.47044 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47489 * 300.00213 * 1 2 3 31 31 H 1.07999 * 119.62192 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.96635 * 179.97438 * 5 4 3 33 33 H 0.97001 * 119.99694 * 179.68820 * 11 10 9 34 34 H 1.09009 * 109.47187 * 300.27655 * 14 12 11 35 35 H 1.08998 * 109.47423 * 60.27743 * 14 12 11 36 36 H 1.08995 * 109.46638 * 300.00000 * 15 14 12 37 37 H 1.08998 * 109.46846 * 59.99547 * 15 14 12 38 38 H 1.08995 * 109.47672 * 299.99669 * 16 15 14 39 39 H 1.09007 * 109.47288 * 60.00489 * 16 15 14 40 40 H 1.09000 * 109.47211 * 300.00870 * 17 16 15 41 41 H 1.09007 * 109.46376 * 60.00328 * 17 16 15 42 42 H 0.96999 * 120.00235 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.25145 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2837 2.3783 0.0005 5 6 1.8836 3.6047 0.0000 6 6 3.2730 3.7018 -0.0016 7 7 4.1485 4.7590 -0.0020 8 1 3.8982 5.6961 -0.0016 9 7 5.4588 4.2701 0.0022 10 6 5.4492 2.9637 -0.0028 11 7 6.5731 2.1296 -0.0026 12 6 7.8098 2.6652 -0.0034 13 8 7.9489 3.8702 -0.0038 14 6 9.0199 1.7671 0.0030 15 6 10.2892 2.6215 0.0077 16 6 11.5177 1.7096 0.0148 17 6 12.7870 2.5640 0.0188 18 6 13.9971 1.6658 0.0264 19 1 13.8732 0.5930 0.0278 20 6 15.2622 2.2139 0.0317 21 7 15.4131 3.5203 0.0305 22 14 16.7623 1.1006 0.0404 23 1 17.1664 0.8036 -1.3573 24 1 17.8791 1.7802 0.7448 25 1 16.4337 -0.1671 0.7406 26 6 4.0515 2.5295 -0.0021 27 6 3.4238 1.2797 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2058 2.3114 0.0005 32 1 1.2802 4.5004 0.0000 33 1 6.4618 1.1660 -0.0021 34 1 9.0016 1.1389 0.8937 35 1 9.0095 1.1370 -0.8863 36 1 10.3076 3.2496 -0.8829 37 1 10.2996 3.2516 0.8970 38 1 11.4991 1.0818 0.9055 39 1 11.5074 1.0792 -0.8744 40 1 12.8053 3.1916 -0.8722 41 1 12.7974 3.1947 0.9078 42 1 16.3031 3.9058 0.0338 43 1 4.0132 0.3747 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589844266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:56 Heat of formation + Delta-G solvation = 0.867124 kcal Electronic energy + Delta-G solvation = -24539.814495 eV Core-core repulsion = 20779.392032 eV Total energy + Delta-G solvation = -3760.422462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72078 -39.99651 -39.38582 -36.33073 -35.21385 -34.76375 -32.65119 -32.01138 -30.32632 -29.64131 -29.22355 -27.30042 -25.82817 -23.76721 -23.14505 -22.29009 -21.21132 -20.12772 -19.96740 -18.79363 -17.93465 -16.98763 -16.74281 -16.31659 -16.18628 -16.08691 -15.90259 -15.55724 -15.04165 -14.45084 -14.21368 -13.98044 -13.93659 -13.92248 -13.36296 -12.65982 -12.64468 -12.54329 -12.31843 -11.71690 -11.60334 -11.55370 -11.33040 -11.05000 -10.97172 -10.91609 -10.53547 -10.49052 -10.40519 -9.87934 -9.66318 -9.58612 -9.21999 -8.97064 -8.86637 -8.28306 -7.76654 -5.93017 -3.95567 0.49423 1.11802 2.01807 2.17053 2.73653 2.86798 3.06587 3.34614 3.35787 3.41793 3.44956 4.11057 4.23982 4.41173 4.50955 4.56411 4.66055 4.71088 4.78286 4.92065 4.99684 5.03941 5.27738 5.33449 5.42332 5.44803 5.60825 5.66240 5.82697 5.83064 6.06881 6.13536 6.28363 6.39329 6.55699 6.80016 6.84582 6.99210 7.03100 7.13553 7.22230 7.57113 7.76411 7.92284 8.08188 8.10845 8.49942 9.12177 9.68017 11.18237 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030419 B = 0.001820 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.270341 B =15378.348505 C =16262.226386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.082 3.918 4 C -0.143 4.143 5 C -0.106 4.106 6 C 0.114 3.886 7 N -0.506 5.506 8 H 0.443 0.557 9 N -0.227 5.227 10 C 0.316 3.684 11 N -0.641 5.641 12 C 0.504 3.496 13 O -0.483 6.483 14 C -0.133 4.133 15 C -0.105 4.105 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.520 4.520 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.145 4.145 27 C -0.076 4.076 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.421 0.579 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.790 -5.380 -0.087 36.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.036 3.964 4 C -0.164 4.164 5 C -0.128 4.128 6 C -0.002 4.002 7 N -0.223 5.223 8 H 0.288 0.712 9 N -0.050 5.050 10 C 0.049 3.951 11 N -0.293 5.293 12 C 0.291 3.709 13 O -0.351 6.351 14 C -0.173 4.173 15 C -0.143 4.143 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.559 4.559 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.155 4.155 27 C -0.097 4.097 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.259 0.741 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -34.608 -3.520 -0.078 34.787 hybrid contribution -0.164 -1.046 -0.009 1.059 sum -34.773 -4.566 -0.086 35.071 Atomic orbital electron populations 1.23038 0.78508 1.03998 1.01168 1.86085 1.21150 1.26312 1.89612 1.18484 0.91635 0.84318 1.01986 1.20845 1.00199 0.91512 1.03830 1.19599 0.90160 0.98226 1.04804 1.18710 0.92166 0.88012 1.01289 1.45839 1.00951 1.07509 1.68046 0.71193 1.77289 0.97103 1.08409 1.22246 1.20217 0.85655 0.89314 0.99948 1.43280 1.02743 1.09435 1.73879 1.21540 0.83616 0.90279 0.75454 1.90822 1.85081 1.15057 1.44140 1.21814 0.92109 0.98821 1.04572 1.21491 0.91658 0.97943 1.03194 1.21649 0.94841 0.98096 1.00182 1.19104 0.90393 0.94943 0.97364 1.21284 0.91126 0.93061 1.50405 0.92724 1.25043 0.99115 0.94949 0.95479 1.69974 1.22554 1.09977 1.50919 0.86611 0.82693 0.80744 0.78025 1.20727 1.21279 1.19927 1.19091 0.90390 0.93415 1.12589 1.19570 0.91442 0.96121 1.02596 0.92754 0.88245 0.92745 0.84659 0.84995 0.74122 0.88524 0.88531 0.91619 0.91626 0.93356 0.93365 0.96561 0.96553 0.93061 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.80 101.05 0.99 1.10 16 2 O -0.32 -2.43 10.49 -19.72 -0.21 -2.63 16 3 C 0.08 0.67 6.67 -39.27 -0.26 0.41 16 4 C -0.14 -0.94 8.96 -39.77 -0.36 -1.30 16 5 C -0.11 -0.75 10.02 -39.81 -0.40 -1.14 16 6 C 0.11 1.13 7.33 -84.11 -0.62 0.52 16 7 N -0.51 -5.46 7.37 32.38 0.24 -5.22 16 8 H 0.44 3.38 8.96 -182.78 -1.64 1.74 16 9 N -0.23 -3.36 10.79 32.61 0.35 -3.01 16 10 C 0.32 4.09 8.06 -152.61 -1.23 2.86 16 11 N -0.64 -7.17 5.44 -9.72 -0.05 -7.22 16 12 C 0.50 7.20 7.80 -10.99 -0.09 7.11 16 13 O -0.48 -9.15 14.72 5.54 0.08 -9.07 16 14 C -0.13 -1.69 5.70 -27.88 -0.16 -1.85 16 15 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 16 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 17 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 18 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 19 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 22 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.14 -1.56 6.37 -105.09 -0.67 -2.22 16 27 C -0.08 -0.68 10.04 -39.09 -0.39 -1.07 16 28 H 0.05 0.15 7.65 -51.93 -0.40 -0.25 16 29 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 0.15 7.65 -51.93 -0.40 -0.25 16 31 H 0.14 0.51 6.25 -52.49 -0.33 0.19 16 32 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 33 H 0.42 2.94 8.82 -40.82 -0.36 2.58 16 34 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -37.85 367.59 -9.63 -47.48 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -7.31 Total: -2.51 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -3.99 Total: -13.42 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 1.27 Total: -42.37 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.13 Total: -11.70 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.85 -9.63 -47.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589844266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.344 kcal (2) G-P(sol) polarization free energy of solvation -37.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds