Wall clock time and date at job start Tue Mar 31 2020 11:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35994 * 117.00167 * 2 1 4 4 C 1.39383 * 119.82269 * 0.02562 * 3 2 1 5 5 C 1.36522 * 120.75650 * 180.02562 * 4 3 2 6 6 C 1.39285 * 120.06496 * 0.02562 * 5 4 3 7 7 N 1.37262 * 133.62388 * 180.02562 * 6 5 4 8 8 H 0.96998 * 125.41940 * 359.96963 * 7 6 5 9 9 N 1.39855 * 109.16571 * 179.73438 * 7 6 5 10 10 C 1.30642 * 110.03830 * 0.37877 * 9 7 6 11 11 N 1.39963 * 126.15994 * 179.90570 * 10 9 7 12 12 C 1.34773 * 120.00192 * 359.67681 * 11 10 9 13 13 O 1.21303 * 120.00079 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00373 * 179.72981 * 12 11 10 15 15 C 1.53004 * 109.47535 * 180.27843 * 14 12 11 16 16 C 1.52997 * 109.47000 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.47000 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47211 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99761 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99724 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00509 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99915 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 89.99876 * 22 20 18 24 24 H 1.48499 * 109.47352 * 210.00030 * 22 20 18 25 25 H 1.48501 * 109.46810 * 330.00491 * 22 20 18 26 26 C 1.40716 * 119.58895 * 359.97438 * 6 5 4 27 27 C 1.37913 * 119.82606 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47007 * 60.00609 * 1 2 3 29 29 H 1.08998 * 109.47044 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47489 * 300.00213 * 1 2 3 31 31 H 1.07999 * 119.62192 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.96635 * 179.97438 * 5 4 3 33 33 H 0.97001 * 119.99694 * 179.68820 * 11 10 9 34 34 H 1.09009 * 109.47187 * 300.27655 * 14 12 11 35 35 H 1.08998 * 109.47423 * 60.27743 * 14 12 11 36 36 H 1.08995 * 109.46638 * 300.00000 * 15 14 12 37 37 H 1.08998 * 109.46846 * 59.99547 * 15 14 12 38 38 H 1.08995 * 109.47672 * 299.99669 * 16 15 14 39 39 H 1.09007 * 109.47288 * 60.00489 * 16 15 14 40 40 H 1.09000 * 109.47211 * 300.00870 * 17 16 15 41 41 H 1.09007 * 109.46376 * 60.00328 * 17 16 15 42 42 H 0.96999 * 120.00235 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.25145 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2837 2.3783 0.0005 5 6 1.8836 3.6047 0.0000 6 6 3.2730 3.7018 -0.0016 7 7 4.1485 4.7590 -0.0020 8 1 3.8982 5.6961 -0.0016 9 7 5.4588 4.2701 0.0022 10 6 5.4492 2.9637 -0.0028 11 7 6.5731 2.1296 -0.0026 12 6 7.8098 2.6652 -0.0034 13 8 7.9489 3.8702 -0.0038 14 6 9.0199 1.7671 0.0030 15 6 10.2892 2.6215 0.0077 16 6 11.5177 1.7096 0.0148 17 6 12.7870 2.5640 0.0188 18 6 13.9971 1.6658 0.0264 19 1 13.8732 0.5930 0.0278 20 6 15.2622 2.2139 0.0317 21 7 15.4131 3.5203 0.0305 22 14 16.7623 1.1006 0.0404 23 1 17.1664 0.8036 -1.3573 24 1 17.8791 1.7802 0.7448 25 1 16.4337 -0.1671 0.7406 26 6 4.0515 2.5295 -0.0021 27 6 3.4238 1.2797 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2058 2.3114 0.0005 32 1 1.2802 4.5004 0.0000 33 1 6.4618 1.1660 -0.0021 34 1 9.0016 1.1389 0.8937 35 1 9.0095 1.1370 -0.8863 36 1 10.3076 3.2496 -0.8829 37 1 10.2996 3.2516 0.8970 38 1 11.4991 1.0818 0.9055 39 1 11.5074 1.0792 -0.8744 40 1 12.8053 3.1916 -0.8722 41 1 12.7974 3.1947 0.9078 42 1 16.3031 3.9058 0.0338 43 1 4.0132 0.3747 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589844266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:55 Heat of formation + Delta-G solvation = -25.085381 kcal Electronic energy + Delta-G solvation = -24540.939880 eV Core-core repulsion = 20779.392032 eV Total energy + Delta-G solvation = -3761.547847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.48685 -40.90830 -40.11776 -37.03152 -36.63449 -35.99580 -34.61074 -32.81683 -31.57027 -30.73113 -29.96685 -27.77076 -27.51819 -24.95177 -24.14681 -23.18581 -22.38149 -21.58983 -21.12696 -19.44477 -18.62363 -18.40541 -17.90831 -17.52220 -17.09055 -16.98627 -16.58854 -16.48760 -16.21697 -16.03582 -15.32259 -15.14898 -14.80195 -14.53062 -14.42340 -13.90555 -13.85582 -13.60401 -13.29781 -13.12182 -12.95155 -12.81841 -12.42959 -12.33524 -12.16812 -12.11494 -11.95884 -11.80242 -11.54387 -11.35037 -11.33581 -11.15297 -10.84565 -10.53628 -10.38936 -9.64558 -8.46042 -8.17308 -6.29468 -0.15928 0.47241 1.08037 1.35259 1.41298 1.43633 1.54689 1.90536 2.03337 2.42955 2.49411 2.70156 3.15423 3.42863 3.53204 3.69301 3.93852 4.03158 4.08476 4.16568 4.25474 4.35206 4.49597 4.51867 4.65759 4.70570 4.82566 4.84318 4.88736 4.92949 4.94134 5.07875 5.20199 5.27562 5.35360 5.39090 5.47988 5.54462 5.59323 5.80386 5.90076 6.01644 6.26775 6.43844 6.51192 6.68674 6.89359 7.12642 7.40159 8.94864 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030419 B = 0.001820 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.270341 B =15378.348505 C =16262.226386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.081 3.919 4 C -0.135 4.135 5 C -0.101 4.101 6 C 0.100 3.900 7 N -0.502 5.502 8 H 0.452 0.548 9 N -0.281 5.281 10 C 0.301 3.699 11 N -0.623 5.623 12 C 0.505 3.495 13 O -0.540 6.540 14 C -0.120 4.120 15 C -0.098 4.098 16 C -0.095 4.095 17 C 0.017 3.983 18 C -0.541 4.541 19 H 0.068 0.932 20 C -0.008 4.008 21 N -0.938 5.938 22 Si 0.970 3.030 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.258 1.258 26 C -0.158 4.158 27 C -0.091 4.091 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.441 0.559 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.064 0.936 40 H -0.016 1.016 41 H -0.016 1.016 42 H 0.262 0.738 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.176 -8.328 -0.088 39.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.034 3.966 4 C -0.156 4.156 5 C -0.123 4.123 6 C -0.015 4.015 7 N -0.222 5.222 8 H 0.299 0.701 9 N -0.105 5.105 10 C 0.033 3.967 11 N -0.276 5.276 12 C 0.294 3.706 13 O -0.412 6.412 14 C -0.159 4.159 15 C -0.136 4.136 16 C -0.133 4.133 17 C -0.021 4.021 18 C -0.579 4.579 19 H 0.086 0.914 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.794 3.206 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.182 1.182 26 C -0.168 4.168 27 C -0.112 4.112 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.085 0.915 31 H 0.186 0.814 32 H 0.180 0.820 33 H 0.282 0.718 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.071 0.929 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -37.054 -6.529 -0.079 37.624 hybrid contribution 0.389 -0.128 -0.010 0.410 sum -36.664 -6.658 -0.089 37.264 Atomic orbital electron populations 1.23348 0.76479 1.05526 1.02389 1.86071 1.23305 1.26098 1.89403 1.18673 0.91623 0.85207 1.01068 1.21234 1.01803 0.90597 1.01943 1.19979 0.89005 0.99783 1.03516 1.19110 0.93268 0.87364 1.01796 1.45743 1.00065 1.08308 1.68114 0.70132 1.77143 0.99634 1.09930 1.23812 1.20475 0.86826 0.89266 1.00086 1.43023 1.01665 1.10353 1.72583 1.21769 0.84796 0.89614 0.74448 1.90809 1.85975 1.17427 1.47028 1.21698 0.88551 0.97878 1.07773 1.21274 0.93449 0.97751 1.01138 1.21442 0.92621 0.97556 1.01632 1.19079 0.93680 0.95009 0.94290 1.21773 0.92068 0.93939 1.50112 0.91398 1.26106 1.03007 0.96552 0.94844 1.70138 1.23498 1.12280 1.51956 0.85375 0.77904 0.78825 0.78486 1.19743 1.21050 1.18234 1.19154 0.89284 0.94566 1.13807 1.19727 0.92289 0.95904 1.03252 0.91471 0.86800 0.91464 0.81409 0.81977 0.71752 0.85209 0.85205 0.93840 0.93858 0.91752 0.91738 0.99775 0.99775 0.92929 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.80 113.37 1.11 1.18 16 2 O -0.33 -4.27 10.49 -93.48 -0.98 -5.25 16 3 C 0.08 1.13 6.67 22.47 0.15 1.28 16 4 C -0.14 -1.35 8.96 22.14 0.20 -1.15 16 5 C -0.10 -1.18 10.02 22.12 0.22 -0.96 16 6 C 0.10 1.91 7.33 39.15 0.29 2.20 16 7 N -0.50 -11.12 7.37 -51.47 -0.38 -11.49 16 8 H 0.45 7.18 8.96 -213.48 -1.91 5.26 16 9 N -0.28 -8.72 10.79 -50.73 -0.55 -9.27 16 10 C 0.30 7.93 8.06 135.15 1.09 9.01 16 11 N -0.62 -13.67 5.44 -303.04 -1.65 -15.31 16 12 C 0.51 14.50 7.80 87.66 0.68 15.18 16 13 O -0.54 -21.55 14.72 -3.10 -0.05 -21.60 16 14 C -0.12 -2.84 5.70 29.85 0.17 -2.67 16 15 C -0.10 -3.53 4.50 30.59 0.14 -3.39 16 16 C -0.10 -3.85 5.15 30.59 0.16 -3.69 16 17 C 0.02 0.92 4.97 29.85 0.15 1.06 16 18 C -0.54 -31.54 9.11 25.60 0.23 -31.30 16 19 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 20 C -0.01 -0.48 5.46 84.65 0.46 -0.01 16 21 N -0.94 -59.65 13.29 21.45 0.28 -59.37 16 22 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 25 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 26 C -0.16 -3.33 6.37 -20.17 -0.13 -3.46 16 27 C -0.09 -1.49 10.04 22.59 0.23 -1.27 16 28 H 0.07 0.12 7.65 -2.38 -0.02 0.11 16 29 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.07 0.12 7.65 -2.39 -0.02 0.11 16 31 H 0.17 0.53 6.25 -2.91 -0.02 0.51 16 32 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 33 H 0.44 5.47 8.82 -92.71 -0.82 4.65 16 34 H 0.13 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 37 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 40 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 41 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 42 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -87.01 367.59 2.18 -84.83 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -1.68 Total: 8.28 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 5.15 Total: -17.98 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -2.29 Total: -95.45 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -1.03 Total: -26.85 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -87.01 2.18 -84.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589844266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.747 kcal (2) G-P(sol) polarization free energy of solvation -87.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds