Wall clock time and date at job start Tue Mar 31 2020 11:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00241 * 2 1 4 4 C 1.39440 * 119.73328 * 0.02562 * 3 2 1 5 5 C 1.36385 * 120.56269 * 180.02562 * 4 3 2 6 6 C 1.39836 * 119.86797 * 0.02562 * 5 4 3 7 7 C 1.40785 * 119.86894 * 359.97438 * 6 5 4 8 8 C 1.38082 * 119.73413 * 180.02562 * 3 2 1 9 9 N 1.37090 * 106.83285 * 180.02562 * 7 6 5 10 10 H 0.97001 * 125.40906 * 180.02562 * 9 7 6 11 11 N 1.39851 * 109.18534 * 0.02562 * 9 7 6 12 12 C 1.30633 * 110.04247 * 359.97438 * 11 9 7 13 13 N 1.39931 * 126.16555 * 179.97438 * 12 11 9 14 14 C 1.34779 * 120.00301 * 0.02562 * 13 12 11 15 15 O 1.21289 * 119.99574 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00151 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46926 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47010 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.46815 * 179.97438 * 18 17 16 20 20 C 1.50709 * 109.46971 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99914 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00215 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99722 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00223 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47370 * 89.99847 * 24 22 20 26 26 H 1.48502 * 109.47084 * 210.00436 * 24 22 20 27 27 H 1.48507 * 109.46932 * 329.99865 * 24 22 20 28 28 H 1.08997 * 109.47029 * 59.99900 * 1 2 3 29 29 H 1.08993 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46656 * 299.99967 * 1 2 3 31 31 H 1.07999 * 119.71757 * 0.27987 * 4 3 2 32 32 H 1.07996 * 120.06450 * 180.02562 * 5 4 3 33 33 H 1.08007 * 120.15299 * 359.95734 * 8 3 2 34 34 H 0.97004 * 120.00466 * 180.02562 * 13 12 11 35 35 H 1.09004 * 109.47312 * 300.00291 * 16 14 13 36 36 H 1.08998 * 109.47253 * 60.00664 * 16 14 13 37 37 H 1.08996 * 109.47174 * 300.00331 * 17 16 14 38 38 H 1.08998 * 109.46948 * 60.00066 * 17 16 14 39 39 H 1.09005 * 109.46712 * 300.00139 * 18 17 16 40 40 H 1.08999 * 109.46889 * 59.99852 * 18 17 16 41 41 H 1.08997 * 109.47743 * 299.99877 * 19 18 17 42 42 H 1.08999 * 109.47511 * 60.00236 * 19 18 17 43 43 H 0.96998 * 120.00025 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2812 2.3767 0.0005 5 6 1.8828 3.6007 0.0000 6 6 3.2782 3.6909 -0.0016 7 6 4.0566 2.5177 -0.0021 8 6 3.4253 1.2766 -0.0005 9 7 5.3695 2.9124 -0.0032 10 1 6.1353 2.3171 -0.0041 11 7 5.4294 4.3096 -0.0027 12 6 4.2224 4.8095 -0.0020 13 7 3.8918 6.1691 -0.0008 14 6 4.8666 7.0998 -0.0009 15 8 6.0306 6.7587 -0.0024 16 6 4.5105 8.5641 -0.0002 17 6 5.7916 9.4006 -0.0011 18 6 5.4301 10.8873 0.0002 19 6 6.7112 11.7236 0.0000 20 6 6.3551 13.1880 0.0006 21 1 5.3186 13.4917 0.0007 22 6 7.3523 14.1401 0.0011 23 7 8.6144 13.7702 0.0004 24 14 6.9110 15.9551 0.0026 25 1 6.7943 16.4351 1.4031 26 1 7.9719 16.7231 -0.6972 27 1 5.6156 16.1501 -0.6970 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 0.2033 2.3099 0.0055 32 1 1.2826 4.4986 0.0009 33 1 4.0117 0.3696 -0.0003 34 1 2.9609 6.4420 0.0000 35 1 3.9249 8.7961 -0.8899 36 1 3.9258 8.7955 0.8901 37 1 6.3775 9.1687 0.8883 38 1 6.3760 9.1692 -0.8916 39 1 4.8439 11.1194 -0.8890 40 1 4.8459 11.1183 0.8910 41 1 7.2969 11.4914 0.8894 42 1 7.2957 11.4927 -0.8905 43 1 9.3161 14.4400 0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589850157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:05 Heat of formation + Delta-G solvation = -0.786938 kcal Electronic energy + Delta-G solvation = -24476.983636 eV Core-core repulsion = 20716.489448 eV Total energy + Delta-G solvation = -3760.494188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71820 -40.07903 -39.44221 -36.33364 -35.28103 -34.78641 -32.66813 -31.97817 -30.18731 -29.63467 -29.28448 -27.50747 -25.84710 -23.65823 -23.15577 -22.28170 -21.23150 -20.16756 -19.98403 -18.89373 -17.76190 -17.03668 -16.48392 -16.32466 -16.27310 -16.08723 -16.01520 -15.93538 -15.03918 -14.46265 -14.26477 -13.99182 -13.97404 -13.92938 -13.10422 -12.68387 -12.67971 -12.59918 -12.31400 -11.73283 -11.61337 -11.38737 -11.35144 -11.26593 -11.00929 -10.98027 -10.55099 -10.50141 -10.42057 -9.89163 -9.61990 -9.54545 -9.23378 -8.98212 -8.59076 -8.29311 -8.06732 -5.94015 -3.96658 0.61662 1.08587 2.03401 2.10807 2.64967 2.86466 3.11703 3.34911 3.36184 3.40968 3.43973 4.08484 4.29777 4.44458 4.50220 4.56018 4.64300 4.66947 4.79765 4.92766 4.98583 5.05257 5.24903 5.30988 5.41357 5.45360 5.60471 5.67797 5.79080 5.90776 6.08563 6.11645 6.26578 6.40270 6.54148 6.78593 6.82834 6.89611 7.01392 7.13625 7.20771 7.58018 7.75259 7.91052 8.07049 8.09117 8.48723 9.11074 9.66985 11.17260 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.041739 B = 0.001732 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.681317 B =16160.199441 C =16794.527787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.178 3.822 4 C -0.241 4.241 5 C 0.004 3.996 6 C -0.216 4.216 7 C 0.182 3.818 8 C -0.191 4.191 9 N -0.505 5.505 10 H 0.444 0.556 11 N -0.238 5.238 12 C 0.328 3.672 13 N -0.641 5.641 14 C 0.503 3.497 15 O -0.481 6.481 16 C -0.133 4.133 17 C -0.105 4.105 18 C -0.110 4.110 19 C 0.019 3.981 20 C -0.521 4.521 21 H 0.054 0.946 22 C 0.055 3.945 23 N -0.895 5.895 24 Si 0.891 3.109 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.420 0.580 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.149 -29.261 0.001 35.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.130 3.870 4 C -0.261 4.261 5 C -0.016 4.016 6 C -0.225 4.225 7 C 0.064 3.936 8 C -0.215 4.215 9 N -0.220 5.220 10 H 0.289 0.711 11 N -0.061 5.061 12 C 0.060 3.940 13 N -0.294 5.294 14 C 0.290 3.710 15 O -0.349 6.349 16 C -0.173 4.173 17 C -0.143 4.143 18 C -0.147 4.147 19 C -0.018 4.018 20 C -0.559 4.559 21 H 0.073 0.927 22 C -0.146 4.146 23 N -0.534 5.534 24 Si 0.719 3.281 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.258 0.742 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.035 0.965 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.743 -29.238 -0.006 34.200 hybrid contribution -1.322 0.716 0.013 1.503 sum -19.064 -28.522 0.007 34.307 Atomic orbital electron populations 1.23115 0.77864 1.04156 1.01699 1.86065 1.21779 1.26737 1.88205 1.18576 0.91256 0.84180 0.93001 1.20725 1.00230 0.91742 1.13413 1.20036 0.91431 0.97646 0.92524 1.19345 0.94019 0.90625 1.18526 1.18279 0.85626 0.93630 0.96095 1.18924 0.91607 0.95261 1.15681 1.45894 1.04769 1.03864 1.67491 0.71115 1.77340 1.17549 0.87488 1.23724 1.20268 0.90298 0.84904 0.98566 1.43279 1.11510 1.00690 1.73882 1.21549 0.85337 0.88590 0.75483 1.90824 1.18478 1.81636 1.43968 1.21813 1.02385 0.88566 1.04527 1.21496 0.94303 0.95304 1.03220 1.21647 1.00888 0.92048 1.00163 1.19102 0.91701 0.93630 0.97377 1.21284 0.92629 0.91555 1.50464 0.92734 1.25042 0.95054 0.99006 0.95460 1.69976 0.98980 1.33566 1.50880 0.86610 0.78043 0.85383 0.78032 1.20722 1.21269 1.19932 0.92317 0.88102 0.92317 0.84815 0.85085 0.84627 0.74241 0.88551 0.88553 0.91612 0.91605 0.93369 0.93374 0.96551 0.96548 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 9.80 101.05 0.99 1.08 16 2 O -0.32 -2.31 10.48 -19.41 -0.20 -2.51 16 3 C 0.18 1.45 6.68 -39.19 -0.26 1.18 16 4 C -0.24 -1.63 8.96 -39.80 -0.36 -1.99 16 5 C 0.00 0.03 10.04 -39.65 -0.40 -0.37 16 6 C -0.22 -2.25 6.37 -105.06 -0.67 -2.91 16 7 C 0.18 1.90 7.32 -84.18 -0.62 1.28 16 8 C -0.19 -1.68 10.01 -39.26 -0.39 -2.08 16 9 N -0.50 -5.66 7.36 32.35 0.24 -5.42 16 10 H 0.44 3.63 8.96 -182.79 -1.64 1.99 16 11 N -0.24 -3.54 10.79 32.61 0.35 -3.19 16 12 C 0.33 4.17 8.06 -152.64 -1.23 2.94 16 13 N -0.64 -6.90 5.44 -9.72 -0.05 -6.96 16 14 C 0.50 7.06 7.80 -10.98 -0.09 6.98 16 15 O -0.48 -9.07 14.72 5.55 0.08 -8.99 16 16 C -0.13 -1.65 5.70 -27.88 -0.16 -1.81 16 17 C -0.11 -1.84 4.50 -26.73 -0.12 -1.96 16 18 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 19 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 20 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 21 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 24 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.06 0.15 7.65 -51.93 -0.40 -0.25 16 29 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.15 7.64 -51.93 -0.40 -0.25 16 31 H 0.13 0.56 6.24 -52.49 -0.33 0.23 16 32 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 34 H 0.42 2.64 8.82 -40.82 -0.36 2.28 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -37.86 367.55 -9.62 -47.48 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -7.31 Total: -2.57 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -3.99 Total: -13.43 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 1.27 Total: -42.40 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.12 Total: -11.50 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.86 -9.62 -47.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589850157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.698 kcal (2) G-P(sol) polarization free energy of solvation -37.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds