Wall clock time and date at job start Tue Mar 31 2020 11:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00241 * 2 1 4 4 C 1.39440 * 119.73328 * 0.02562 * 3 2 1 5 5 C 1.36385 * 120.56269 * 180.02562 * 4 3 2 6 6 C 1.39836 * 119.86797 * 0.02562 * 5 4 3 7 7 C 1.40785 * 119.86894 * 359.97438 * 6 5 4 8 8 C 1.38082 * 119.73413 * 180.02562 * 3 2 1 9 9 N 1.37090 * 106.83285 * 180.02562 * 7 6 5 10 10 H 0.97001 * 125.40906 * 180.02562 * 9 7 6 11 11 N 1.39851 * 109.18534 * 0.02562 * 9 7 6 12 12 C 1.30633 * 110.04247 * 359.97438 * 11 9 7 13 13 N 1.39931 * 126.16555 * 179.97438 * 12 11 9 14 14 C 1.34779 * 120.00301 * 0.02562 * 13 12 11 15 15 O 1.21289 * 119.99574 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00151 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46926 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47010 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.46815 * 179.97438 * 18 17 16 20 20 C 1.50709 * 109.46971 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99914 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00215 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99722 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00223 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47370 * 89.99847 * 24 22 20 26 26 H 1.48502 * 109.47084 * 210.00436 * 24 22 20 27 27 H 1.48507 * 109.46932 * 329.99865 * 24 22 20 28 28 H 1.08997 * 109.47029 * 59.99900 * 1 2 3 29 29 H 1.08993 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46656 * 299.99967 * 1 2 3 31 31 H 1.07999 * 119.71757 * 0.27987 * 4 3 2 32 32 H 1.07996 * 120.06450 * 180.02562 * 5 4 3 33 33 H 1.08007 * 120.15299 * 359.95734 * 8 3 2 34 34 H 0.97004 * 120.00466 * 180.02562 * 13 12 11 35 35 H 1.09004 * 109.47312 * 300.00291 * 16 14 13 36 36 H 1.08998 * 109.47253 * 60.00664 * 16 14 13 37 37 H 1.08996 * 109.47174 * 300.00331 * 17 16 14 38 38 H 1.08998 * 109.46948 * 60.00066 * 17 16 14 39 39 H 1.09005 * 109.46712 * 300.00139 * 18 17 16 40 40 H 1.08999 * 109.46889 * 59.99852 * 18 17 16 41 41 H 1.08997 * 109.47743 * 299.99877 * 19 18 17 42 42 H 1.08999 * 109.47511 * 60.00236 * 19 18 17 43 43 H 0.96998 * 120.00025 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2812 2.3767 0.0005 5 6 1.8828 3.6007 0.0000 6 6 3.2782 3.6909 -0.0016 7 6 4.0566 2.5177 -0.0021 8 6 3.4253 1.2766 -0.0005 9 7 5.3695 2.9124 -0.0032 10 1 6.1353 2.3171 -0.0041 11 7 5.4294 4.3096 -0.0027 12 6 4.2224 4.8095 -0.0020 13 7 3.8918 6.1691 -0.0008 14 6 4.8666 7.0998 -0.0009 15 8 6.0306 6.7587 -0.0024 16 6 4.5105 8.5641 -0.0002 17 6 5.7916 9.4006 -0.0011 18 6 5.4301 10.8873 0.0002 19 6 6.7112 11.7236 0.0000 20 6 6.3551 13.1880 0.0006 21 1 5.3186 13.4917 0.0007 22 6 7.3523 14.1401 0.0011 23 7 8.6144 13.7702 0.0004 24 14 6.9110 15.9551 0.0026 25 1 6.7943 16.4351 1.4031 26 1 7.9719 16.7231 -0.6972 27 1 5.6156 16.1501 -0.6970 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 0.2033 2.3099 0.0055 32 1 1.2826 4.4986 0.0009 33 1 4.0117 0.3696 -0.0003 34 1 2.9609 6.4420 0.0000 35 1 3.9249 8.7961 -0.8899 36 1 3.9258 8.7955 0.8901 37 1 6.3775 9.1687 0.8883 38 1 6.3760 9.1692 -0.8916 39 1 4.8439 11.1194 -0.8890 40 1 4.8459 11.1183 0.8910 41 1 7.2969 11.4914 0.8894 42 1 7.2957 11.4927 -0.8905 43 1 9.3161 14.4400 0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589850157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:04 Heat of formation + Delta-G solvation = -26.846347 kcal Electronic energy + Delta-G solvation = -24478.113657 eV Core-core repulsion = 20716.489448 eV Total energy + Delta-G solvation = -3761.624208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.48483 -40.93547 -40.20838 -37.00888 -36.66181 -36.04535 -34.60802 -32.81018 -31.51370 -30.47715 -30.17983 -27.88815 -27.58103 -24.89955 -24.09610 -23.14207 -22.42654 -21.58453 -21.13434 -19.50623 -18.61371 -18.40278 -17.70821 -17.32002 -17.10390 -17.08271 -16.67775 -16.59701 -16.47978 -16.03971 -15.31585 -15.15923 -14.82647 -14.54248 -14.42890 -13.84806 -13.71688 -13.57744 -13.28048 -13.13069 -13.01615 -12.81190 -12.33851 -12.32481 -12.15958 -12.10475 -11.91307 -11.82847 -11.77608 -11.34543 -11.33001 -11.14613 -10.83498 -10.53360 -10.37718 -9.24273 -8.83408 -8.17061 -6.29290 -0.05210 0.44939 1.10587 1.31873 1.41663 1.43982 1.54983 1.92455 1.95765 2.43265 2.51286 2.71553 3.15833 3.39622 3.55825 3.73336 3.95754 4.02509 4.12179 4.17560 4.29033 4.38980 4.48167 4.49469 4.65862 4.71760 4.79329 4.85040 4.87115 4.89743 4.97421 5.13496 5.20850 5.32146 5.36080 5.39725 5.46959 5.59320 5.62610 5.80865 5.90511 6.03014 6.26927 6.37666 6.43427 6.70800 6.89757 7.14953 7.40493 8.95144 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.041739 B = 0.001732 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.681317 B =16160.199441 C =16794.527787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.179 3.821 4 C -0.234 4.234 5 C 0.008 3.992 6 C -0.229 4.229 7 C 0.169 3.831 8 C -0.207 4.207 9 N -0.506 5.506 10 H 0.450 0.550 11 N -0.294 5.294 12 C 0.317 3.683 13 N -0.620 5.620 14 C 0.504 3.496 15 O -0.541 6.541 16 C -0.119 4.119 17 C -0.099 4.099 18 C -0.095 4.095 19 C 0.016 3.984 20 C -0.541 4.541 21 H 0.069 0.931 22 C -0.008 4.008 23 N -0.939 5.939 24 Si 0.970 3.030 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.258 1.258 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.443 0.557 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.065 0.935 41 H -0.017 1.017 42 H -0.017 1.017 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.778 -29.089 0.006 38.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.130 3.870 4 C -0.254 4.254 5 C -0.012 4.012 6 C -0.239 4.239 7 C 0.051 3.949 8 C -0.231 4.231 9 N -0.224 5.224 10 H 0.296 0.704 11 N -0.118 5.118 12 C 0.049 3.951 13 N -0.274 5.274 14 C 0.293 3.707 15 O -0.413 6.413 16 C -0.158 4.158 17 C -0.137 4.137 18 C -0.132 4.132 19 C -0.021 4.021 20 C -0.579 4.579 21 H 0.087 0.913 22 C -0.205 4.205 23 N -0.579 5.579 24 Si 0.794 3.206 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.182 1.182 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.090 0.910 31 H 0.184 0.816 32 H 0.185 0.815 33 H 0.160 0.840 34 H 0.285 0.715 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.461 -29.095 0.000 36.757 hybrid contribution 0.047 0.491 0.012 0.493 sum -22.415 -28.605 0.012 36.341 Atomic orbital electron populations 1.23445 0.75728 1.05789 1.02914 1.86059 1.24017 1.26466 1.87825 1.18780 0.91164 0.85164 0.91881 1.21101 1.01776 0.90822 1.11703 1.20450 0.90210 0.99407 0.91135 1.19514 0.95252 0.89365 1.19746 1.18550 0.85244 0.94516 0.96573 1.19069 0.92475 0.94958 1.16555 1.45805 1.05694 1.02918 1.67987 0.70384 1.77201 1.19677 0.89400 1.25522 1.20533 0.90558 0.85749 0.98262 1.43001 1.12149 0.99739 1.72508 1.21810 0.84904 0.89601 0.74404 1.90816 1.21018 1.82551 1.46916 1.21697 0.99879 0.86322 1.07887 1.21283 0.96683 0.94693 1.01069 1.21438 0.97675 0.92412 1.01679 1.19081 0.94166 0.94606 0.94252 1.21782 0.93390 0.92634 1.50103 0.91332 1.26105 0.94820 1.04725 0.94833 1.70143 1.00352 1.35448 1.51975 0.85375 0.78279 0.78451 0.78486 1.19751 1.21114 1.18170 0.91036 0.86511 0.91028 0.81597 0.81513 0.83983 0.71516 0.85057 0.85052 0.93951 0.93944 0.91685 0.91674 0.99831 0.99828 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.80 113.37 1.11 1.17 16 2 O -0.33 -4.13 10.48 -92.38 -0.97 -5.10 16 3 C 0.18 2.55 6.68 22.52 0.15 2.70 16 4 C -0.23 -2.37 8.96 22.13 0.20 -2.17 16 5 C 0.01 0.09 10.04 22.22 0.22 0.32 16 6 C -0.23 -4.52 6.37 -20.15 -0.13 -4.65 16 7 C 0.17 3.54 7.32 39.19 0.29 3.83 16 8 C -0.21 -3.55 10.01 22.47 0.22 -3.33 16 9 N -0.51 -12.10 7.36 -51.55 -0.38 -12.48 16 10 H 0.45 8.29 8.96 -213.48 -1.91 6.37 16 11 N -0.29 -9.22 10.79 -50.74 -0.55 -9.77 16 12 C 0.32 8.01 8.06 135.17 1.09 9.10 16 13 N -0.62 -12.41 5.44 -303.05 -1.65 -14.06 16 14 C 0.50 13.87 7.80 87.66 0.68 14.55 16 15 O -0.54 -21.32 14.72 -3.06 -0.05 -21.36 16 16 C -0.12 -2.66 5.70 29.85 0.17 -2.49 16 17 C -0.10 -3.49 4.50 30.60 0.14 -3.36 16 18 C -0.09 -3.75 5.15 30.59 0.16 -3.60 16 19 C 0.02 0.88 4.97 29.85 0.15 1.03 16 20 C -0.54 -31.30 9.11 25.60 0.23 -31.06 16 21 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 22 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 23 N -0.94 -59.46 13.29 21.45 0.28 -59.17 16 24 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 26 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 27 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 28 H 0.07 0.10 7.65 -2.39 -0.02 0.08 16 29 H 0.12 0.05 8.14 -2.39 -0.02 0.04 16 30 H 0.07 0.10 7.64 -2.39 -0.02 0.08 16 31 H 0.17 0.57 6.24 -2.91 -0.02 0.55 16 32 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 33 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.44 4.11 8.82 -92.71 -0.82 3.29 16 35 H 0.13 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 38 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 39 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 41 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 42 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -87.75 367.55 2.19 -85.56 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -1.68 Total: 7.51 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 5.15 Total: -17.96 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -2.29 Total: -95.48 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -1.01 Total: -26.47 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -87.75 2.19 -85.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589850157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.714 kcal (2) G-P(sol) polarization free energy of solvation -87.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds