Wall clock time and date at job start Tue Mar 31 2020 11:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.34779 * 120.00001 * 2 1 4 4 O 1.21585 * 119.99673 * 0.02562 * 3 2 1 5 5 C 1.47606 * 120.00057 * 180.02562 * 3 2 1 6 6 C 1.39693 * 120.06757 * 0.02562 * 5 3 2 7 7 C 1.37831 * 120.04080 * 179.97438 * 6 5 3 8 8 C 1.38772 * 120.17191 * 0.02562 * 7 6 5 9 9 O 1.35818 * 119.94000 * 179.97438 * 8 7 6 10 10 C 1.42907 * 116.99606 * 0.02562 * 9 8 7 11 11 C 1.39559 * 120.12816 * 0.02562 * 8 7 6 12 12 N 1.39988 * 120.02077 * 179.97438 * 11 8 7 13 13 C 1.46501 * 119.99968 * 180.02562 * 12 11 8 14 14 C 1.52994 * 109.47260 * 180.02562 * 13 12 11 15 15 H 1.09008 * 109.46970 * 304.99798 * 14 13 12 16 16 C 1.47205 * 109.47251 * 64.99431 * 14 13 12 17 17 N 9.16287 * 135.77202 * 339.62640 * 2 1 3 18 18 C 1.52997 * 109.47404 * 184.99847 * 14 13 12 19 19 C 1.50701 * 109.47212 * 174.99684 * 18 14 13 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 14 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 14 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47294 * 60.00559 * 23 21 19 25 25 H 1.48503 * 109.46954 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47431 * 300.00157 * 23 21 19 27 27 C 1.38311 * 119.95856 * 0.24769 * 11 8 7 28 28 H 1.09006 * 109.47360 * 299.99615 * 1 2 3 29 29 H 1.08998 * 109.47622 * 60.00042 * 1 2 3 30 30 H 1.09005 * 109.47253 * 180.02562 * 1 2 3 31 31 H 0.97005 * 120.00291 * 180.02562 * 2 1 3 32 32 H 1.08003 * 119.97977 * 359.97432 * 6 5 3 33 33 H 1.08002 * 119.91376 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.46847 * 59.99951 * 10 9 8 35 35 H 1.09001 * 109.47010 * 180.02562 * 10 9 8 36 36 H 1.09004 * 109.47159 * 299.99996 * 10 9 8 37 37 H 0.96994 * 119.99589 * 0.02562 * 12 11 8 38 38 H 1.09001 * 109.46980 * 59.99342 * 13 12 11 39 39 H 1.09009 * 109.46889 * 299.99851 * 13 12 11 40 40 H 1.09002 * 109.47153 * 54.99686 * 18 14 13 41 41 H 1.09001 * 109.46832 * 294.99876 * 18 14 13 42 42 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 43 43 H 1.07998 * 120.08684 * 179.70052 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5308 2.2201 0.0005 5 6 3.6149 1.1672 -0.0006 6 6 4.3148 -0.0417 -0.0017 7 6 5.6931 -0.0410 -0.0027 8 6 6.3900 1.1590 -0.0022 9 8 7.7481 1.1542 -0.0027 10 6 8.3923 -0.1215 -0.0044 11 6 5.6979 2.3709 0.0000 12 7 6.4032 3.5802 0.0010 13 6 5.6763 4.8521 0.0039 14 6 6.6755 6.0106 0.0039 15 1 7.3605 5.8996 0.8446 16 6 7.4383 6.0007 -1.2551 17 7 8.0307 5.9914 -2.2250 18 6 5.9208 7.3352 0.1325 19 6 6.9088 8.4665 0.2561 20 1 7.9690 8.2612 0.2437 21 6 6.4591 9.7636 0.3840 22 7 5.1681 10.0135 0.3986 23 14 7.6838 11.1658 0.5364 24 1 8.5469 11.2028 -0.6715 25 1 6.9512 12.4515 0.6614 26 1 8.5269 10.9580 1.7411 27 6 4.3148 2.3765 0.0068 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.9500 -0.8401 -0.0004 32 1 3.7755 -0.9775 -0.0017 33 1 6.2321 -0.9769 -0.0040 34 1 8.0970 -0.6764 -0.8949 35 1 9.4734 0.0174 -0.0042 36 1 8.0977 -0.6785 0.8851 37 1 7.3731 3.5758 -0.0001 38 1 5.0508 4.9111 0.8946 39 1 5.0488 4.9140 -0.8854 40 1 5.2871 7.3078 1.0190 41 1 5.3020 7.4881 -0.7517 42 1 4.8517 10.9261 0.4889 43 1 3.7772 3.3131 0.0133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591772576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:37 Heat of formation + Delta-G solvation = -25.034015 kcal Electronic energy + Delta-G solvation = -25376.861510 eV Core-core repulsion = 21615.315890 eV Total energy + Delta-G solvation = -3761.545620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63204 -39.49569 -37.80056 -36.83292 -35.14860 -34.72848 -33.61620 -31.90440 -30.60253 -29.39467 -27.96920 -26.86316 -26.14726 -23.86037 -23.22723 -21.89142 -21.42665 -20.53849 -18.69873 -17.80258 -17.27597 -16.66492 -16.42464 -15.95073 -15.90579 -15.46971 -15.29812 -14.90080 -14.55164 -14.38495 -13.98938 -13.89082 -13.44476 -13.25835 -13.03932 -12.97579 -12.82024 -12.54822 -12.46349 -12.17873 -11.97556 -11.93246 -11.37012 -11.19850 -11.19152 -11.09216 -10.76435 -10.60153 -10.37443 -10.06950 -10.04943 -9.64622 -9.34584 -9.29315 -8.66674 -8.46380 -7.20860 -6.10315 -4.14415 0.84674 1.38344 2.83659 3.01863 3.06031 3.30689 3.35404 3.37905 3.47627 3.54893 3.63944 3.83639 4.39955 4.58852 4.60963 4.70380 4.77261 4.89545 4.93256 4.99987 5.17672 5.25438 5.27473 5.28004 5.35151 5.39244 5.55232 5.61725 5.68556 5.87399 6.01055 6.07420 6.16348 6.24459 6.27497 6.39380 6.55647 6.98146 7.29818 7.39660 7.43290 7.48604 7.83327 7.83789 8.10578 8.19589 8.35902 8.89354 9.51137 11.00385 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.003061 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.776109 B = 9143.948489 C =11027.112921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.736 5.736 3 C 0.560 3.440 4 O -0.532 6.532 5 C -0.125 4.125 6 C -0.112 4.112 7 C -0.172 4.172 8 C 0.077 3.923 9 O -0.316 6.316 10 C 0.031 3.969 11 C 0.198 3.802 12 N -0.739 5.739 13 C 0.128 3.872 14 C -0.001 4.001 15 H 0.108 0.892 16 C 0.239 3.761 17 N -0.467 5.467 18 C 0.034 3.966 19 C -0.530 4.530 20 H 0.056 0.944 21 C 0.064 3.936 22 N -0.889 5.889 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.110 4.110 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.400 0.600 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.405 0.595 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.029 0.971 42 H 0.264 0.736 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.280 -27.018 2.436 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.389 5.389 3 C 0.348 3.652 4 O -0.409 6.409 5 C -0.128 4.128 6 C -0.133 4.133 7 C -0.192 4.192 8 C 0.027 3.973 9 O -0.230 6.230 10 C -0.064 4.064 11 C 0.093 3.907 12 N -0.369 5.369 13 C 0.003 3.997 14 C -0.023 4.023 15 H 0.126 0.874 16 C -0.078 4.078 17 N -0.144 5.144 18 C -0.005 4.005 19 C -0.568 4.568 20 H 0.074 0.926 21 C -0.139 4.139 22 N -0.527 5.527 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.134 4.134 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.235 0.765 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.241 0.759 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.964 -25.767 0.984 25.956 hybrid contribution 0.990 0.123 0.418 1.082 sum -1.974 -25.644 1.402 25.758 Atomic orbital electron populations 1.21533 0.79425 1.02055 1.02577 1.45696 1.07725 1.08672 1.76774 1.18289 0.87396 0.83586 0.75887 1.90811 1.69996 1.31081 1.49004 1.19447 0.92077 0.93805 1.07518 1.20674 0.93441 0.96456 1.02771 1.20826 0.94795 0.96317 1.07235 1.18706 0.82560 0.92796 1.03200 1.85990 1.16222 1.31637 1.89108 1.23022 0.98044 0.84200 1.01134 1.17071 0.90608 0.84393 0.98582 1.44796 1.08556 1.02052 1.81490 1.21606 0.94586 0.80709 1.02758 1.19466 0.95695 0.98755 0.88408 0.87394 1.29123 0.92903 0.91302 0.94512 1.81058 1.10655 1.10515 1.12160 1.19159 0.95410 0.86777 0.99130 1.21061 0.92782 0.91441 1.51542 0.92553 1.24946 0.95177 0.98882 0.94871 1.69927 1.12743 1.20647 1.49386 0.86643 0.81222 0.81368 0.78765 1.20263 1.21140 1.20044 1.20620 0.90747 0.98778 1.03246 0.92082 0.92109 0.90773 0.76516 0.86096 0.85142 0.92768 0.88356 0.92701 0.75906 0.89901 0.91402 0.93889 0.95244 0.92632 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.70 59.84 0.64 1.27 16 2 N -0.74 -6.26 5.66 -68.13 -0.39 -6.65 16 3 C 0.56 7.12 7.76 -12.44 -0.10 7.02 16 4 O -0.53 -8.94 16.34 5.29 0.09 -8.85 16 5 C -0.12 -1.50 5.87 -104.98 -0.62 -2.12 16 6 C -0.11 -1.03 9.53 -39.19 -0.37 -1.40 16 7 C -0.17 -1.62 9.01 -39.53 -0.36 -1.98 16 8 C 0.08 0.91 6.71 -38.89 -0.26 0.65 16 9 O -0.32 -3.60 9.72 -19.17 -0.19 -3.79 16 10 C 0.03 0.22 9.81 101.05 0.99 1.21 16 11 C 0.20 2.69 6.66 -83.61 -0.56 2.13 16 12 N -0.74 -10.42 5.52 -58.53 -0.32 -10.74 16 13 C 0.13 1.94 4.28 -4.04 -0.02 1.93 16 14 C 0.00 -0.02 2.26 -93.41 -0.21 -0.23 16 15 H 0.11 1.78 8.14 -51.92 -0.42 1.35 16 16 C 0.24 4.84 13.45 -20.74 -0.28 4.56 16 17 N -0.47 -10.32 18.54 42.18 0.78 -9.54 16 18 C 0.03 0.78 4.42 -27.88 -0.12 0.65 16 19 C -0.53 -14.01 8.60 -34.44 -0.30 -14.31 16 20 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 23 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.11 -1.51 8.85 -39.00 -0.35 -1.85 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.40 2.14 6.85 -40.82 -0.28 1.86 16 32 H 0.12 0.68 6.39 -52.48 -0.34 0.34 16 33 H 0.13 0.86 6.27 -52.49 -0.33 0.53 16 34 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 37 H 0.41 5.68 7.57 -40.82 -0.31 5.37 16 38 H 0.08 1.18 7.94 -51.93 -0.41 0.76 16 39 H 0.07 1.07 7.96 -51.92 -0.41 0.65 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.15 2.16 6.31 -52.49 -0.33 1.83 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -33.99 370.80 -6.42 -40.41 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.70 Total: 2.87 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -2.00 Total: -0.81 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.81 Total: -51.70 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.10 Total: -12.64 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.99 -6.42 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591772576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.372 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds