Wall clock time and date at job start Tue Mar 31 2020 11:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.34779 * 120.00001 * 2 1 4 4 O 1.21585 * 119.99673 * 0.02562 * 3 2 1 5 5 C 1.47606 * 120.00057 * 180.02562 * 3 2 1 6 6 C 1.39693 * 120.06757 * 0.02562 * 5 3 2 7 7 C 1.37831 * 120.04080 * 179.97438 * 6 5 3 8 8 C 1.38772 * 120.17191 * 0.02562 * 7 6 5 9 9 O 1.35818 * 119.94000 * 179.97438 * 8 7 6 10 10 C 1.42907 * 116.99606 * 0.02562 * 9 8 7 11 11 C 1.39559 * 120.12816 * 0.02562 * 8 7 6 12 12 N 1.39988 * 120.02077 * 179.97438 * 11 8 7 13 13 C 1.46501 * 119.99968 * 180.02562 * 12 11 8 14 14 C 1.52994 * 109.47260 * 180.02562 * 13 12 11 15 15 H 1.09008 * 109.46970 * 304.99798 * 14 13 12 16 16 C 1.47205 * 109.47251 * 64.99431 * 14 13 12 17 17 N 9.16287 * 135.77202 * 339.62640 * 2 1 3 18 18 C 1.52997 * 109.47404 * 184.99847 * 14 13 12 19 19 C 1.50701 * 109.47212 * 174.99684 * 18 14 13 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 14 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 14 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47294 * 60.00559 * 23 21 19 25 25 H 1.48503 * 109.46954 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47431 * 300.00157 * 23 21 19 27 27 C 1.38311 * 119.95856 * 0.24769 * 11 8 7 28 28 H 1.09006 * 109.47360 * 299.99615 * 1 2 3 29 29 H 1.08998 * 109.47622 * 60.00042 * 1 2 3 30 30 H 1.09005 * 109.47253 * 180.02562 * 1 2 3 31 31 H 0.97005 * 120.00291 * 180.02562 * 2 1 3 32 32 H 1.08003 * 119.97977 * 359.97432 * 6 5 3 33 33 H 1.08002 * 119.91376 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.46847 * 59.99951 * 10 9 8 35 35 H 1.09001 * 109.47010 * 180.02562 * 10 9 8 36 36 H 1.09004 * 109.47159 * 299.99996 * 10 9 8 37 37 H 0.96994 * 119.99589 * 0.02562 * 12 11 8 38 38 H 1.09001 * 109.46980 * 59.99342 * 13 12 11 39 39 H 1.09009 * 109.46889 * 299.99851 * 13 12 11 40 40 H 1.09002 * 109.47153 * 54.99686 * 18 14 13 41 41 H 1.09001 * 109.46832 * 294.99876 * 18 14 13 42 42 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 43 43 H 1.07998 * 120.08684 * 179.70052 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5308 2.2201 0.0005 5 6 3.6149 1.1672 -0.0006 6 6 4.3148 -0.0417 -0.0017 7 6 5.6931 -0.0410 -0.0027 8 6 6.3900 1.1590 -0.0022 9 8 7.7481 1.1542 -0.0027 10 6 8.3923 -0.1215 -0.0044 11 6 5.6979 2.3709 0.0000 12 7 6.4032 3.5802 0.0010 13 6 5.6763 4.8521 0.0039 14 6 6.6755 6.0106 0.0039 15 1 7.3605 5.8996 0.8446 16 6 7.4383 6.0007 -1.2551 17 7 8.0307 5.9914 -2.2250 18 6 5.9208 7.3352 0.1325 19 6 6.9088 8.4665 0.2561 20 1 7.9690 8.2612 0.2437 21 6 6.4591 9.7636 0.3840 22 7 5.1681 10.0135 0.3986 23 14 7.6838 11.1658 0.5364 24 1 8.5469 11.2028 -0.6715 25 1 6.9512 12.4515 0.6614 26 1 8.5269 10.9580 1.7411 27 6 4.3148 2.3765 0.0068 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.9500 -0.8401 -0.0004 32 1 3.7755 -0.9775 -0.0017 33 1 6.2321 -0.9769 -0.0040 34 1 8.0970 -0.6764 -0.8949 35 1 9.4734 0.0174 -0.0042 36 1 8.0977 -0.6785 0.8851 37 1 7.3731 3.5758 -0.0001 38 1 5.0508 4.9111 0.8946 39 1 5.0488 4.9140 -0.8854 40 1 5.2871 7.3078 1.0190 41 1 5.3020 7.4881 -0.7517 42 1 4.8517 10.9261 0.4889 43 1 3.7772 3.3131 0.0133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591772576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:36 Heat of formation + Delta-G solvation = -49.040358 kcal Electronic energy + Delta-G solvation = -25377.902503 eV Core-core repulsion = 21615.315890 eV Total energy + Delta-G solvation = -3762.586613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50726 -40.39376 -39.02894 -37.97810 -36.43537 -35.68135 -35.36604 -33.56991 -31.45536 -30.57526 -28.64166 -28.23867 -27.07709 -25.24783 -24.16499 -23.63402 -22.39008 -21.44619 -19.59424 -18.71076 -18.57971 -18.36526 -17.73388 -16.85019 -16.69260 -16.61877 -16.31163 -16.15757 -15.89941 -15.42106 -15.09148 -14.91570 -14.61939 -14.48484 -14.24862 -14.14624 -13.95902 -13.82130 -13.64296 -13.36667 -13.13526 -13.03846 -12.92404 -12.73208 -12.49070 -12.44912 -12.08455 -11.94912 -11.90883 -11.49975 -11.25515 -11.07754 -11.06727 -10.56714 -10.15586 -9.51965 -8.20557 -8.19009 -6.29891 -0.05585 0.53775 1.40706 1.42189 1.49476 1.86516 1.88851 1.91030 2.23423 2.30486 2.40274 2.56527 2.94310 3.10628 3.16980 3.82551 3.86701 3.93176 4.06194 4.24768 4.31854 4.43389 4.47969 4.49435 4.51475 4.63048 4.66725 4.78800 4.80328 4.82650 4.88943 4.96450 5.04568 5.28238 5.38868 5.43343 5.44056 5.55851 5.69119 5.76100 6.04318 6.16783 6.51884 6.58552 6.67362 6.80302 6.85408 7.26661 7.38844 8.90338 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.003061 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.776109 B = 9143.948489 C =11027.112921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.716 5.716 3 C 0.554 3.446 4 O -0.587 6.587 5 C -0.142 4.142 6 C -0.089 4.089 7 C -0.166 4.166 8 C 0.076 3.924 9 O -0.338 6.338 10 C 0.020 3.980 11 C 0.173 3.827 12 N -0.743 5.743 13 C 0.144 3.856 14 C 0.014 3.986 15 H 0.131 0.869 16 C 0.251 3.749 17 N -0.498 5.498 18 C 0.039 3.961 19 C -0.541 4.541 20 H 0.058 0.942 21 C 0.011 3.989 22 N -0.923 5.923 23 Si 0.951 3.049 24 H -0.280 1.280 25 H -0.283 1.283 26 H -0.262 1.262 27 C -0.129 4.129 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.117 0.883 31 H 0.419 0.581 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.405 0.595 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.038 0.962 41 H 0.002 0.998 42 H 0.265 0.735 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.278 -30.471 3.076 30.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.369 5.369 3 C 0.343 3.657 4 O -0.469 6.469 5 C -0.146 4.146 6 C -0.110 4.110 7 C -0.185 4.185 8 C 0.027 3.973 9 O -0.251 6.251 10 C -0.074 4.074 11 C 0.070 3.930 12 N -0.374 5.374 13 C 0.018 3.982 14 C -0.008 4.008 15 H 0.148 0.852 16 C -0.066 4.066 17 N -0.175 5.175 18 C 0.000 4.000 19 C -0.579 4.579 20 H 0.076 0.924 21 C -0.188 4.188 22 N -0.563 5.563 23 Si 0.777 3.223 24 H -0.206 1.206 25 H -0.208 1.208 26 H -0.186 1.186 27 C -0.153 4.153 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.136 0.864 31 H 0.257 0.743 32 H 0.182 0.818 33 H 0.186 0.814 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.241 0.759 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.021 0.979 42 H 0.074 0.926 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.952 -29.315 1.630 29.425 hybrid contribution 0.673 1.022 0.207 1.241 sum -1.279 -28.293 1.837 28.381 Atomic orbital electron populations 1.21708 0.78422 1.04510 1.01419 1.45588 1.08427 1.08203 1.74656 1.18535 0.87827 0.83934 0.75431 1.90782 1.70972 1.33206 1.51923 1.19532 0.91893 0.94428 1.08758 1.21118 0.93590 0.96820 0.99422 1.21256 0.94923 0.96794 1.05571 1.18897 0.83200 0.92885 1.02332 1.85973 1.15915 1.34336 1.88921 1.23349 0.98506 0.82887 1.02663 1.17201 0.90606 0.84818 1.00402 1.44550 1.08311 1.01783 1.82791 1.21293 0.93577 0.80662 1.02618 1.19338 0.95872 0.97419 0.88195 0.85158 1.29477 0.92244 0.90367 0.94500 1.81050 1.11900 1.11485 1.13067 1.18965 0.94880 0.88565 0.97580 1.21489 0.93421 0.92526 1.50481 0.92417 1.25747 0.96722 1.01477 0.94901 1.70039 1.14390 1.21113 1.50749 0.85707 0.79150 0.78585 0.78885 1.20597 1.20790 1.18613 1.20549 0.91131 0.98876 1.04772 0.93245 0.93395 0.86426 0.74322 0.81753 0.81400 0.91353 0.87224 0.90857 0.75921 0.89176 0.92675 0.94332 0.97920 0.92650 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 10.70 127.77 1.37 2.41 16 2 N -0.72 -10.69 5.66 -487.71 -2.76 -13.46 16 3 C 0.55 13.97 7.76 86.72 0.67 14.64 16 4 O -0.59 -20.80 16.34 -3.98 -0.07 -20.87 16 5 C -0.14 -3.31 5.87 -20.09 -0.12 -3.43 16 6 C -0.09 -1.31 9.53 22.52 0.21 -1.10 16 7 C -0.17 -2.50 9.01 22.30 0.20 -2.30 16 8 C 0.08 1.68 6.71 22.72 0.15 1.83 16 9 O -0.34 -7.02 9.72 -91.50 -0.89 -7.91 16 10 C 0.02 0.21 9.81 113.37 1.11 1.33 16 11 C 0.17 4.69 6.66 38.17 0.25 4.95 16 12 N -0.74 -21.31 5.52 -339.09 -1.87 -23.19 16 13 C 0.14 4.55 4.28 86.38 0.37 4.92 16 14 C 0.01 0.49 2.26 -12.60 -0.03 0.47 16 15 H 0.13 4.22 8.14 -2.38 -0.02 4.20 16 16 C 0.25 10.29 13.45 89.44 1.20 11.50 16 17 N -0.50 -22.24 18.54 20.01 0.37 -21.87 16 18 C 0.04 1.84 4.42 29.85 0.13 1.97 16 19 C -0.54 -28.91 8.60 25.60 0.22 -28.69 16 20 H 0.06 3.01 7.59 -2.91 -0.02 2.99 16 21 C 0.01 0.59 5.46 84.66 0.46 1.06 16 22 N -0.92 -54.11 13.29 21.45 0.28 -53.82 16 23 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 26 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 27 C -0.13 -3.67 8.85 22.65 0.20 -3.47 16 28 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.42 2.83 6.85 -92.70 -0.63 2.20 16 32 H 0.17 0.91 6.39 -2.91 -0.02 0.89 16 33 H 0.17 1.26 6.27 -2.91 -0.02 1.24 16 34 H 0.07 0.54 7.65 -2.39 -0.02 0.53 16 35 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.52 7.65 -2.39 -0.02 0.50 16 37 H 0.41 11.39 7.57 -92.71 -0.70 10.69 16 38 H 0.09 2.70 7.94 -2.39 -0.02 2.68 16 39 H 0.05 1.86 7.96 -2.38 -0.02 1.84 16 40 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.12 3.96 6.31 -2.91 -0.02 3.95 16 Total: -1.00 -76.99 370.80 3.24 -73.75 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -0.27 Total: 15.39 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 6.42 Total: 6.07 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -3.98 Total: -112.33 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.95 Total: -28.78 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -76.99 3.24 -73.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591772576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.710 kcal (2) G-P(sol) polarization free energy of solvation -76.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds