Wall clock time and date at job start Tue Mar 31 2020 11:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99973 * 2 1 4 4 O 1.21591 * 119.99863 * 0.02562 * 3 2 1 5 5 C 1.47615 * 120.00217 * 179.97438 * 3 2 1 6 6 C 1.39694 * 120.06153 * 0.02562 * 5 3 2 7 7 C 1.37831 * 120.03252 * 179.97438 * 6 5 3 8 8 C 1.38772 * 120.17468 * 359.97438 * 7 6 5 9 9 O 1.35816 * 119.93567 * 179.97438 * 8 7 6 10 10 C 1.42905 * 116.99922 * 0.02562 * 9 8 7 11 11 C 1.39555 * 120.12904 * 0.27282 * 8 7 6 12 12 N 1.39985 * 120.02149 * 179.72682 * 11 8 7 13 13 C 1.46492 * 120.00243 * 179.97438 * 12 11 8 14 14 C 1.52998 * 109.47569 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.46981 * 54.99982 * 14 13 12 16 16 C 1.47203 * 109.47147 * 295.00424 * 14 13 12 17 17 N 9.16118 * 135.77772 * 20.61262 * 2 1 3 18 18 C 1.52997 * 109.47430 * 175.00148 * 14 13 12 19 19 C 1.50699 * 109.47183 * 184.99817 * 18 14 13 20 20 H 1.08004 * 119.99814 * 0.02562 * 19 18 14 21 21 C 1.37873 * 120.00168 * 179.97438 * 19 18 14 22 22 N 1.31518 * 120.00041 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00134 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47014 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47242 * 120.00127 * 23 21 19 26 26 H 1.48507 * 109.46742 * 240.00095 * 23 21 19 27 27 C 1.38313 * 119.95392 * 359.46748 * 11 8 7 28 28 H 1.08998 * 109.46728 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47100 * 299.99917 * 1 2 3 30 30 H 1.09000 * 109.46841 * 60.00344 * 1 2 3 31 31 H 0.96999 * 120.00384 * 179.97438 * 2 1 3 32 32 H 1.07997 * 119.98577 * 359.97283 * 6 5 3 33 33 H 1.08004 * 119.91039 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47103 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.47054 * 299.99701 * 10 9 8 36 36 H 1.09000 * 109.47187 * 59.99756 * 10 9 8 37 37 H 0.96999 * 119.99602 * 0.02562 * 12 11 8 38 38 H 1.09002 * 109.47314 * 300.00422 * 13 12 11 39 39 H 1.09009 * 109.47028 * 59.99961 * 13 12 11 40 40 H 1.08993 * 109.47420 * 305.00269 * 18 14 13 41 41 H 1.09003 * 109.46825 * 65.00236 * 18 14 13 42 42 H 0.96994 * 119.99933 * 179.97438 * 22 21 19 43 43 H 1.08007 * 120.07885 * 180.24937 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 6 3.6150 1.1673 0.0006 6 6 4.3149 -0.0418 0.0006 7 6 5.6932 -0.0410 0.0006 8 6 6.3900 1.1591 0.0000 9 8 7.7482 1.1541 0.0006 10 6 8.3923 -0.1215 0.0011 11 6 5.6980 2.3709 0.0052 12 7 6.4033 3.5802 0.0105 13 6 5.6764 4.8520 0.0154 14 6 6.6757 6.0106 0.0211 15 1 7.3600 5.9043 -0.8206 16 6 7.4394 5.9936 1.2795 17 7 8.0303 5.9804 2.2494 18 6 5.9208 7.3359 -0.0994 19 6 6.9087 8.4678 -0.2172 20 1 7.9690 8.2624 -0.2075 21 6 6.4590 9.7655 -0.3385 22 7 5.1679 10.0156 -0.3508 23 14 7.6836 11.1685 -0.4852 24 1 9.0653 10.6258 -0.4448 25 1 7.4685 11.8810 -1.7702 26 1 7.4905 12.1141 0.6435 27 6 4.3149 2.3764 -0.0002 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9501 -0.8400 0.0004 32 1 3.7757 -0.9775 0.0006 33 1 6.2322 -0.9769 0.0010 34 1 9.4734 0.0174 0.0020 35 1 8.0971 -0.6772 0.8912 36 1 8.0977 -0.6777 -0.8888 37 1 7.3732 3.5758 0.0101 38 1 5.0503 4.9162 -0.8746 39 1 5.0496 4.9089 0.9054 40 1 5.2866 7.3135 -0.9855 41 1 5.3027 7.4838 0.7862 42 1 4.8516 10.9286 -0.4357 43 1 3.7773 3.3132 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591772581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:40 Heat of formation + Delta-G solvation = -25.026127 kcal Electronic energy + Delta-G solvation = -25377.363265 eV Core-core repulsion = 21615.817988 eV Total energy + Delta-G solvation = -3761.545278 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63244 -39.49516 -37.80290 -36.83752 -35.15583 -34.73006 -33.62015 -31.90550 -30.60262 -29.39555 -27.96945 -26.86460 -26.14865 -23.86177 -23.22753 -21.89440 -21.42684 -20.53893 -18.69906 -17.80254 -17.27647 -16.66515 -16.42884 -15.95115 -15.90582 -15.47076 -15.29791 -14.90390 -14.54576 -14.38484 -13.98781 -13.89101 -13.44629 -13.25822 -13.04177 -12.97764 -12.82260 -12.55030 -12.46524 -12.18917 -11.97926 -11.93302 -11.36536 -11.19947 -11.19243 -11.10833 -10.77718 -10.56799 -10.38500 -10.06939 -10.04942 -9.65430 -9.34633 -9.26540 -8.66724 -8.47270 -7.20860 -6.10762 -4.14662 0.84692 1.38317 2.83624 3.01804 3.06032 3.28001 3.36288 3.39715 3.47965 3.55254 3.64163 3.83634 4.39778 4.58856 4.60936 4.70592 4.77259 4.89556 4.93254 4.99995 5.17653 5.25446 5.27218 5.27985 5.35133 5.39244 5.55200 5.61699 5.68533 5.87376 6.01064 6.07412 6.16276 6.24451 6.27486 6.39344 6.55622 6.98162 7.29807 7.39721 7.43325 7.48448 7.83399 7.83768 8.10550 8.19361 8.35904 8.89630 9.51061 11.00011 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003061 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.582707 B = 9143.866833 C =11027.151897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.736 5.736 3 C 0.560 3.440 4 O -0.532 6.532 5 C -0.124 4.124 6 C -0.112 4.112 7 C -0.172 4.172 8 C 0.077 3.923 9 O -0.316 6.316 10 C 0.031 3.969 11 C 0.198 3.802 12 N -0.739 5.739 13 C 0.128 3.872 14 C -0.001 4.001 15 H 0.108 0.892 16 C 0.239 3.761 17 N -0.467 5.467 18 C 0.033 3.967 19 C -0.528 4.528 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.889 5.889 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.283 1.283 27 C -0.110 4.110 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.400 0.600 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.405 0.595 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.029 0.971 42 H 0.263 0.737 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 -27.033 -2.540 27.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.389 5.389 3 C 0.348 3.652 4 O -0.409 6.409 5 C -0.128 4.128 6 C -0.133 4.133 7 C -0.192 4.192 8 C 0.027 3.973 9 O -0.230 6.230 10 C -0.064 4.064 11 C 0.093 3.907 12 N -0.369 5.369 13 C 0.003 3.997 14 C -0.023 4.023 15 H 0.126 0.874 16 C -0.078 4.078 17 N -0.144 5.144 18 C -0.006 4.006 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.139 4.139 22 N -0.527 5.527 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.210 1.210 27 C -0.134 4.134 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.235 0.765 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.241 0.759 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.937 -25.794 -1.084 25.983 hybrid contribution 0.967 0.137 -0.419 1.063 sum -1.970 -25.657 -1.503 25.777 Atomic orbital electron populations 1.21534 0.79420 1.02055 1.02578 1.45696 1.07727 1.08671 1.76771 1.18292 0.87397 0.83588 0.75886 1.90812 1.69999 1.31078 1.49009 1.19446 0.92076 0.93805 1.07516 1.20674 0.93442 0.96455 1.02776 1.20828 0.94796 0.96318 1.07231 1.18704 0.82559 0.92796 1.03205 1.85988 1.16223 1.31637 1.89109 1.23021 0.98045 0.84200 1.01134 1.17070 0.90608 0.84394 0.98581 1.44793 1.08557 1.02052 1.81485 1.21605 0.94588 0.80714 1.02753 1.19464 0.95675 0.98740 0.88453 0.87400 1.29088 0.92913 0.91312 0.94515 1.81023 1.10682 1.10503 1.12167 1.19169 0.95433 0.86793 0.99160 1.21135 0.92852 0.91348 1.51318 0.92445 1.24953 0.95174 0.98914 0.94893 1.69947 1.12714 1.20411 1.49619 0.86529 0.81504 0.82273 0.77724 1.19725 1.20798 1.20957 1.20618 0.90748 0.98779 1.03246 0.90773 0.92113 0.92074 0.76517 0.86095 0.85143 0.88356 0.92777 0.92694 0.75904 0.89906 0.91406 0.93878 0.95235 0.92751 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.70 59.85 0.64 1.27 16 2 N -0.74 -6.26 5.66 -68.12 -0.39 -6.65 16 3 C 0.56 7.11 7.76 -12.43 -0.10 7.02 16 4 O -0.53 -8.94 16.34 5.29 0.09 -8.85 16 5 C -0.12 -1.50 5.87 -104.98 -0.62 -2.12 16 6 C -0.11 -1.03 9.53 -39.19 -0.37 -1.40 16 7 C -0.17 -1.62 9.01 -39.53 -0.36 -1.98 16 8 C 0.08 0.91 6.71 -38.89 -0.26 0.65 16 9 O -0.32 -3.60 9.72 -19.16 -0.19 -3.79 16 10 C 0.03 0.22 9.81 101.05 0.99 1.21 16 11 C 0.20 2.69 6.66 -83.62 -0.56 2.13 16 12 N -0.74 -10.41 5.52 -58.53 -0.32 -10.73 16 13 C 0.13 1.94 4.28 -4.05 -0.02 1.92 16 14 C 0.00 -0.02 2.26 -93.41 -0.21 -0.23 16 15 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 16 C 0.24 4.84 13.45 -20.76 -0.28 4.56 16 17 N -0.47 -10.31 18.54 42.15 0.78 -9.53 16 18 C 0.03 0.76 4.42 -27.89 -0.12 0.63 16 19 C -0.53 -13.95 8.60 -34.44 -0.30 -14.25 16 20 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 23 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C -0.11 -1.51 8.85 -39.00 -0.35 -1.85 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.40 2.14 6.85 -40.82 -0.28 1.86 16 32 H 0.12 0.68 6.39 -52.49 -0.34 0.34 16 33 H 0.13 0.86 6.27 -52.48 -0.33 0.53 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 36 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 37 H 0.41 5.68 7.57 -40.82 -0.31 5.37 16 38 H 0.08 1.17 7.94 -51.93 -0.41 0.76 16 39 H 0.07 1.06 7.96 -51.92 -0.41 0.65 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.15 2.16 6.31 -52.48 -0.33 1.83 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -34.01 370.79 -6.42 -40.43 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.70 Total: 2.79 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.00 Total: -0.80 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.81 Total: -51.65 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.10 Total: -12.64 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.01 -6.42 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591772581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.402 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds