Wall clock time and date at job start Tue Mar 31 2020 11:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99973 * 2 1 4 4 O 1.21591 * 119.99863 * 0.02562 * 3 2 1 5 5 C 1.47615 * 120.00217 * 179.97438 * 3 2 1 6 6 C 1.39694 * 120.06153 * 0.02562 * 5 3 2 7 7 C 1.37831 * 120.03252 * 179.97438 * 6 5 3 8 8 C 1.38772 * 120.17468 * 359.97438 * 7 6 5 9 9 O 1.35816 * 119.93567 * 179.97438 * 8 7 6 10 10 C 1.42905 * 116.99922 * 0.02562 * 9 8 7 11 11 C 1.39555 * 120.12904 * 0.27282 * 8 7 6 12 12 N 1.39985 * 120.02149 * 179.72682 * 11 8 7 13 13 C 1.46492 * 120.00243 * 179.97438 * 12 11 8 14 14 C 1.52998 * 109.47569 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.46981 * 54.99982 * 14 13 12 16 16 C 1.47203 * 109.47147 * 295.00424 * 14 13 12 17 17 N 9.16118 * 135.77772 * 20.61262 * 2 1 3 18 18 C 1.52997 * 109.47430 * 175.00148 * 14 13 12 19 19 C 1.50699 * 109.47183 * 184.99817 * 18 14 13 20 20 H 1.08004 * 119.99814 * 0.02562 * 19 18 14 21 21 C 1.37873 * 120.00168 * 179.97438 * 19 18 14 22 22 N 1.31518 * 120.00041 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00134 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47014 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47242 * 120.00127 * 23 21 19 26 26 H 1.48507 * 109.46742 * 240.00095 * 23 21 19 27 27 C 1.38313 * 119.95392 * 359.46748 * 11 8 7 28 28 H 1.08998 * 109.46728 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47100 * 299.99917 * 1 2 3 30 30 H 1.09000 * 109.46841 * 60.00344 * 1 2 3 31 31 H 0.96999 * 120.00384 * 179.97438 * 2 1 3 32 32 H 1.07997 * 119.98577 * 359.97283 * 6 5 3 33 33 H 1.08004 * 119.91039 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47103 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.47054 * 299.99701 * 10 9 8 36 36 H 1.09000 * 109.47187 * 59.99756 * 10 9 8 37 37 H 0.96999 * 119.99602 * 0.02562 * 12 11 8 38 38 H 1.09002 * 109.47314 * 300.00422 * 13 12 11 39 39 H 1.09009 * 109.47028 * 59.99961 * 13 12 11 40 40 H 1.08993 * 109.47420 * 305.00269 * 18 14 13 41 41 H 1.09003 * 109.46825 * 65.00236 * 18 14 13 42 42 H 0.96994 * 119.99933 * 179.97438 * 22 21 19 43 43 H 1.08007 * 120.07885 * 180.24937 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 6 3.6150 1.1673 0.0006 6 6 4.3149 -0.0418 0.0006 7 6 5.6932 -0.0410 0.0006 8 6 6.3900 1.1591 0.0000 9 8 7.7482 1.1541 0.0006 10 6 8.3923 -0.1215 0.0011 11 6 5.6980 2.3709 0.0052 12 7 6.4033 3.5802 0.0105 13 6 5.6764 4.8520 0.0154 14 6 6.6757 6.0106 0.0211 15 1 7.3600 5.9043 -0.8206 16 6 7.4394 5.9936 1.2795 17 7 8.0303 5.9804 2.2494 18 6 5.9208 7.3359 -0.0994 19 6 6.9087 8.4678 -0.2172 20 1 7.9690 8.2624 -0.2075 21 6 6.4590 9.7655 -0.3385 22 7 5.1679 10.0156 -0.3508 23 14 7.6836 11.1685 -0.4852 24 1 9.0653 10.6258 -0.4448 25 1 7.4685 11.8810 -1.7702 26 1 7.4905 12.1141 0.6435 27 6 4.3149 2.3764 -0.0002 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9501 -0.8400 0.0004 32 1 3.7757 -0.9775 0.0006 33 1 6.2322 -0.9769 0.0010 34 1 9.4734 0.0174 0.0020 35 1 8.0971 -0.6772 0.8912 36 1 8.0977 -0.6777 -0.8888 37 1 7.3732 3.5758 0.0101 38 1 5.0503 4.9162 -0.8746 39 1 5.0496 4.9089 0.9054 40 1 5.2866 7.3135 -0.9855 41 1 5.3027 7.4838 0.7862 42 1 4.8516 10.9286 -0.4357 43 1 3.7773 3.3132 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591772581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:39 Heat of formation + Delta-G solvation = -49.040921 kcal Electronic energy + Delta-G solvation = -25378.404625 eV Core-core repulsion = 21615.817988 eV Total energy + Delta-G solvation = -3762.586637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.50737 -40.39304 -39.03295 -37.98137 -36.44236 -35.68212 -35.36755 -33.57034 -31.45521 -30.57594 -28.64183 -28.24053 -27.07782 -25.24900 -24.16537 -23.63537 -22.38989 -21.44632 -19.59418 -18.71341 -18.57968 -18.36775 -17.73422 -16.85052 -16.69389 -16.61741 -16.30772 -16.15709 -15.89959 -15.42092 -15.09121 -14.91510 -14.62125 -14.49414 -14.24856 -14.15376 -13.96192 -13.82171 -13.64308 -13.36112 -13.13646 -13.03975 -12.93799 -12.74110 -12.51612 -12.40812 -12.08581 -11.95026 -11.90887 -11.50506 -11.23023 -11.07722 -11.06634 -10.57710 -10.15621 -9.51988 -8.20937 -8.18965 -6.30048 -0.05543 0.53776 1.38707 1.41342 1.51852 1.87081 1.89200 1.91179 2.23418 2.30484 2.40027 2.56538 2.94334 3.10823 3.16883 3.82539 3.86709 3.93213 4.06213 4.24815 4.31872 4.43393 4.47978 4.49443 4.51507 4.63120 4.66730 4.78817 4.80338 4.82663 4.88961 4.96454 5.04566 5.28257 5.38876 5.43606 5.44007 5.55800 5.69128 5.76246 6.04359 6.16759 6.51921 6.58555 6.67497 6.80386 6.85595 7.26650 7.38825 8.90342 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003061 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.582707 B = 9143.866833 C =11027.151897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.716 5.716 3 C 0.554 3.446 4 O -0.587 6.587 5 C -0.142 4.142 6 C -0.089 4.089 7 C -0.166 4.166 8 C 0.076 3.924 9 O -0.338 6.338 10 C 0.020 3.980 11 C 0.173 3.827 12 N -0.742 5.742 13 C 0.144 3.856 14 C 0.013 3.987 15 H 0.131 0.869 16 C 0.251 3.749 17 N -0.497 5.497 18 C 0.038 3.962 19 C -0.539 4.539 20 H 0.057 0.943 21 C 0.010 3.990 22 N -0.923 5.923 23 Si 0.952 3.048 24 H -0.268 1.268 25 H -0.273 1.273 26 H -0.286 1.286 27 C -0.129 4.129 28 H 0.117 0.883 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.419 0.581 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.405 0.595 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.003 0.997 42 H 0.264 0.736 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 -30.474 -3.155 30.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.369 5.369 3 C 0.343 3.657 4 O -0.469 6.469 5 C -0.146 4.146 6 C -0.110 4.110 7 C -0.185 4.185 8 C 0.027 3.973 9 O -0.251 6.251 10 C -0.074 4.074 11 C 0.070 3.930 12 N -0.374 5.374 13 C 0.019 3.981 14 C -0.008 4.008 15 H 0.148 0.852 16 C -0.066 4.066 17 N -0.175 5.175 18 C -0.001 4.001 19 C -0.577 4.577 20 H 0.076 0.924 21 C -0.189 4.189 22 N -0.563 5.563 23 Si 0.777 3.223 24 H -0.192 1.192 25 H -0.198 1.198 26 H -0.212 1.212 27 C -0.153 4.153 28 H 0.136 0.864 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.257 0.743 32 H 0.182 0.818 33 H 0.186 0.814 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.241 0.759 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.021 0.979 42 H 0.073 0.927 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.948 -29.328 -1.704 29.442 hybrid contribution 0.656 1.033 -0.219 1.243 sum -1.291 -28.295 -1.923 28.390 Atomic orbital electron populations 1.21710 0.78416 1.04510 1.01421 1.45589 1.08429 1.08202 1.74653 1.18538 0.87828 0.83935 0.75430 1.90783 1.70975 1.33202 1.51928 1.19530 0.91892 0.94428 1.08755 1.21118 0.93590 0.96819 0.99429 1.21256 0.94925 0.96795 1.05570 1.18895 0.83199 0.92885 1.02336 1.85972 1.15917 1.34335 1.88922 1.23348 0.98505 0.82888 1.02663 1.17199 0.90606 0.84819 1.00400 1.44548 1.08312 1.01785 1.82784 1.21292 0.93578 0.80666 1.02612 1.19335 0.95848 0.97408 0.88245 0.85184 1.29439 0.92261 0.90385 0.94504 1.81014 1.11916 1.11466 1.13066 1.18974 0.94898 0.88572 0.97612 1.21538 0.93413 0.92439 1.50276 0.92440 1.25749 0.96717 1.01499 0.94933 1.70053 1.14342 1.20960 1.50952 0.85595 0.79509 0.79350 0.77816 1.19195 1.19803 1.21171 1.20547 0.91132 0.98875 1.04773 0.86427 0.93401 0.93233 0.74324 0.81754 0.81403 0.87225 0.91364 0.90848 0.75919 0.89187 0.92669 0.94321 0.97891 0.92671 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 10.70 127.77 1.37 2.41 16 2 N -0.72 -10.69 5.66 -487.69 -2.76 -13.45 16 3 C 0.55 13.97 7.76 86.72 0.67 14.64 16 4 O -0.59 -20.80 16.34 -4.00 -0.07 -20.87 16 5 C -0.14 -3.31 5.87 -20.09 -0.12 -3.43 16 6 C -0.09 -1.31 9.53 22.53 0.21 -1.10 16 7 C -0.17 -2.50 9.01 22.30 0.20 -2.30 16 8 C 0.08 1.68 6.71 22.72 0.15 1.83 16 9 O -0.34 -7.02 9.72 -91.48 -0.89 -7.91 16 10 C 0.02 0.21 9.81 113.37 1.11 1.33 16 11 C 0.17 4.69 6.66 38.17 0.25 4.95 16 12 N -0.74 -21.30 5.52 -339.11 -1.87 -23.17 16 13 C 0.14 4.55 4.28 86.38 0.37 4.92 16 14 C 0.01 0.49 2.26 -12.60 -0.03 0.46 16 15 H 0.13 4.22 8.14 -2.39 -0.02 4.20 16 16 C 0.25 10.29 13.45 89.44 1.20 11.49 16 17 N -0.50 -22.19 18.54 20.00 0.37 -21.82 16 18 C 0.04 1.80 4.42 29.85 0.13 1.94 16 19 C -0.54 -28.77 8.60 25.60 0.22 -28.55 16 20 H 0.06 3.01 7.59 -2.91 -0.02 2.99 16 21 C 0.01 0.56 5.46 84.65 0.46 1.02 16 22 N -0.92 -54.04 13.29 21.45 0.28 -53.75 16 23 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 27 C -0.13 -3.67 8.85 22.64 0.20 -3.47 16 28 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.42 2.83 6.85 -92.71 -0.63 2.20 16 32 H 0.17 0.91 6.39 -2.91 -0.02 0.90 16 33 H 0.17 1.26 6.27 -2.91 -0.02 1.24 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.54 7.65 -2.38 -0.02 0.53 16 36 H 0.07 0.52 7.65 -2.39 -0.02 0.50 16 37 H 0.41 11.39 7.57 -92.71 -0.70 10.69 16 38 H 0.09 2.70 7.94 -2.39 -0.02 2.68 16 39 H 0.06 1.86 7.96 -2.38 -0.02 1.84 16 40 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.26 14.66 8.31 -92.71 -0.77 13.88 16 43 H 0.12 3.96 6.31 -2.91 -0.02 3.95 16 Total: -1.00 -76.97 370.79 3.24 -73.73 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -0.27 Total: 15.16 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 6.42 Total: 6.13 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -3.98 Total: -112.21 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.95 Total: -28.78 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -76.97 3.24 -73.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591772581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.694 kcal (2) G-P(sol) polarization free energy of solvation -76.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds