Wall clock time and date at job start Tue Mar 31 2020 11:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35957 * 117.00431 * 2 1 4 4 C 1.38828 * 119.98364 * 359.97438 * 3 2 1 5 5 C 1.38105 * 120.25430 * 179.97438 * 4 3 2 6 6 C 1.38654 * 120.03025 * 0.07778 * 5 4 3 7 7 O 1.35697 * 132.50537 * 179.62549 * 6 5 4 8 8 C 1.34699 * 109.31346 * 179.88923 * 7 6 5 9 9 N 1.30355 * 125.54420 * 180.19743 * 8 7 6 10 10 C 1.46505 * 120.00178 * 0.24379 * 9 8 7 11 11 C 1.53040 * 109.45857 * 240.06719 * 10 9 8 12 12 C 1.53200 * 109.30970 * 178.61289 * 11 10 9 13 13 N 1.46925 * 108.77118 * 54.63468 * 12 11 10 14 14 C 1.36937 * 120.62556 * 126.37641 * 13 12 11 15 15 H 1.08004 * 119.99868 * 207.98215 * 14 13 12 16 16 C 1.38811 * 120.00731 * 27.97121 * 14 13 12 17 17 N 1.31621 * 119.99550 * 17.51271 * 16 14 13 18 18 Si 1.86790 * 120.00350 * 197.50573 * 16 14 13 19 19 H 1.48502 * 109.47041 * 94.07164 * 18 16 14 20 20 H 1.48502 * 109.47394 * 214.06892 * 18 16 14 21 21 H 1.48496 * 109.47741 * 334.07049 * 18 16 14 22 22 C 1.46918 * 118.74367 * 306.38803 * 13 12 11 23 23 C 1.53040 * 109.46120 * 119.99821 * 10 9 8 24 24 N 1.37246 * 108.91446 * 0.40856 * 8 7 6 25 25 H 0.97003 * 126.42081 * 179.77926 * 24 8 7 26 26 C 1.39402 * 119.75658 * 359.94490 * 6 5 4 27 27 C 1.38586 * 120.12131 * 0.02562 * 26 6 5 28 28 H 1.09004 * 109.47655 * 59.99959 * 1 2 3 29 29 H 1.08998 * 109.47855 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47084 * 299.99879 * 1 2 3 31 31 H 1.08005 * 119.87288 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.98784 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.45714 * 0.02978 * 10 9 8 34 34 H 1.09001 * 109.49903 * 298.56123 * 11 10 9 35 35 H 1.08999 * 109.49660 * 58.66451 * 11 10 9 36 36 H 1.08997 * 109.58386 * 294.84819 * 12 11 10 37 37 H 1.08997 * 109.58178 * 174.42503 * 12 11 10 38 38 H 0.96994 * 120.00151 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.58925 * 293.82450 * 22 13 12 40 40 H 1.08999 * 109.70787 * 173.47146 * 22 13 12 41 41 H 1.08995 * 109.49803 * 301.34135 * 23 10 9 42 42 H 1.08996 * 109.49703 * 61.43479 * 23 10 9 43 43 H 1.08001 * 120.10078 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2899 2.3755 -0.0005 5 6 1.9112 3.6089 0.0000 6 6 3.2954 3.6886 -0.0006 7 8 4.1532 4.7401 -0.0068 8 6 5.4198 4.2817 -0.0017 9 7 6.4933 5.0212 -0.0018 10 6 6.3769 6.4816 -0.0023 11 6 7.0543 7.0466 -1.2529 12 6 6.9004 8.5708 -1.2676 13 7 7.4199 9.1106 -0.0037 14 6 8.3695 10.0972 -0.0045 15 1 9.0605 10.1824 0.8212 16 6 8.4444 10.9879 -1.0666 17 7 7.4250 11.1186 -1.8888 18 14 9.9917 12.0009 -1.3288 19 1 10.8843 11.3020 -2.2880 20 1 9.6250 13.3327 -1.8741 21 1 10.6960 12.1736 -0.0329 22 6 6.9014 8.5718 1.2609 23 6 7.0552 7.0477 1.2473 24 7 5.3963 2.9095 -0.0013 25 1 6.1669 2.3203 -0.0011 26 6 4.0557 2.5202 -0.0005 27 6 3.4303 1.2835 -0.0004 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2115 2.3163 -0.0005 32 1 1.3185 4.5118 0.0000 33 1 5.3235 6.7618 -0.0021 34 1 8.1131 6.7880 -1.2414 35 1 6.5859 6.6251 -2.1423 36 1 5.8469 8.8306 -1.3704 37 1 7.4647 8.9869 -2.1022 38 1 7.4773 11.7407 -2.6312 39 1 5.8480 8.8318 1.3643 40 1 7.4642 8.9884 2.0962 41 1 6.5876 6.6268 2.1373 42 1 8.1140 6.7890 1.2352 43 1 4.0197 0.3785 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591909053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:02 Heat of formation + Delta-G solvation = 33.594550 kcal Electronic energy + Delta-G solvation = -25813.973504 eV Core-core repulsion = 22054.970209 eV Total energy + Delta-G solvation = -3759.003295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.83921 -40.07247 -37.76262 -36.88539 -35.48320 -34.29825 -32.07201 -31.00784 -30.09754 -29.56275 -28.32726 -27.59579 -24.97983 -23.39202 -22.94052 -22.62033 -21.99884 -20.94111 -19.18973 -18.71824 -18.42762 -16.98350 -16.73583 -16.58314 -16.13861 -16.05892 -15.59974 -14.83611 -14.71518 -14.36042 -13.87182 -13.78918 -13.44550 -13.34895 -13.11076 -12.95722 -12.76787 -12.54511 -12.32197 -12.22610 -11.46630 -11.38288 -11.32069 -11.20807 -10.98462 -10.67886 -10.38311 -10.18235 -10.06539 -9.75780 -9.49425 -9.30152 -9.28081 -8.72234 -8.40517 -7.57196 -6.61124 -5.72417 -3.14203 0.78945 0.96368 2.25539 2.54666 2.65695 3.07730 3.24811 3.42840 3.49514 3.51066 4.14472 4.45548 4.55691 4.59705 4.73028 4.73937 4.91858 4.98704 5.04081 5.06709 5.31209 5.43587 5.52223 5.66424 5.71336 5.77832 5.81091 5.89257 5.98629 6.04776 6.24181 6.42275 6.59861 6.68105 6.69875 6.78423 6.86653 6.89293 7.03912 7.10128 7.25589 7.46120 7.71531 7.86239 8.13519 8.51818 9.27807 9.91468 10.48957 11.36393 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.039576 B = 0.002318 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.329349 B =12076.061090 C =12284.347053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.145 3.855 4 C -0.205 4.205 5 C -0.044 4.044 6 C 0.005 3.995 7 O -0.252 6.252 8 C 0.515 3.485 9 N -0.548 5.548 10 C 0.106 3.894 11 C -0.126 4.126 12 C 0.173 3.827 13 N -0.592 5.592 14 C -0.249 4.249 15 H 0.066 0.934 16 C 0.000 4.000 17 N -0.904 5.904 18 Si 0.903 3.097 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.147 3.853 23 C -0.118 4.118 24 N -0.642 5.642 25 H 0.442 0.558 26 C 0.132 3.868 27 C -0.152 4.152 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.017 0.983 37 H 0.090 0.910 38 H 0.253 0.747 39 H 0.017 0.983 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.065 0.935 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.870 -23.453 3.681 28.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.099 3.901 4 C -0.226 4.226 5 C -0.063 4.063 6 C -0.044 4.044 7 O -0.148 6.148 8 C 0.203 3.797 9 N -0.293 5.293 10 C -0.003 4.003 11 C -0.166 4.166 12 C 0.047 3.953 13 N -0.315 5.315 14 C -0.379 4.379 15 H 0.084 0.916 16 C -0.198 4.198 17 N -0.548 5.548 18 Si 0.733 3.267 19 H -0.215 1.215 20 H -0.219 1.219 21 H -0.204 1.204 22 C 0.020 3.980 23 C -0.158 4.158 24 N -0.280 5.280 25 H 0.285 0.715 26 C 0.031 3.969 27 C -0.175 4.175 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.034 -23.188 3.551 27.336 hybrid contribution 0.270 0.584 -0.246 0.689 sum -13.764 -22.604 3.305 26.671 Atomic orbital electron populations 1.23113 0.77880 1.04181 1.01691 1.86063 1.21687 1.26273 1.88669 1.18371 0.91081 0.84431 0.96212 1.20908 1.00342 0.90693 1.10613 1.19769 0.89019 0.98649 0.98894 1.19019 0.92034 0.83896 1.09411 1.85061 1.15213 1.31738 1.82803 1.21856 0.80629 0.84126 0.93070 1.72913 1.15900 1.09500 1.31005 1.21326 0.98966 0.82353 0.97675 1.22271 1.00312 0.99734 0.94250 1.20789 0.97234 0.86809 0.90480 1.44071 1.46326 1.41627 0.99468 1.19218 1.06676 1.05555 1.06427 0.91623 1.25047 0.97373 0.97349 1.00070 1.70045 1.28321 1.38176 1.18285 0.86263 0.83148 0.79278 0.78026 1.21506 1.21856 1.20402 1.20896 0.96516 0.90294 0.90261 1.22067 1.00772 0.98146 0.94830 1.42147 1.05986 1.04724 1.75098 0.71504 1.18074 0.83727 0.94363 1.00785 1.18893 0.91705 0.95196 1.11700 0.92321 0.88070 0.92341 0.84018 0.84050 0.93123 0.91916 0.93715 0.96448 0.89215 0.93699 0.96541 0.92476 0.93586 0.91578 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.44 10.50 -19.60 -0.21 -2.64 16 3 C 0.15 1.27 6.68 -39.23 -0.26 1.00 16 4 C -0.21 -1.61 9.03 -39.41 -0.36 -1.97 16 5 C -0.04 -0.43 10.06 -39.48 -0.40 -0.82 16 6 C 0.00 0.06 7.32 -38.99 -0.29 -0.23 16 7 O -0.25 -4.01 9.65 0.58 0.01 -4.01 16 8 C 0.51 8.16 8.86 -88.45 -0.78 7.38 16 9 N -0.55 -9.92 10.23 -56.03 -0.57 -10.50 16 10 C 0.11 2.12 2.81 -67.89 -0.19 1.93 16 11 C -0.13 -2.72 5.69 -26.61 -0.15 -2.88 16 12 C 0.17 4.40 5.31 -3.71 -0.02 4.38 16 13 N -0.59 -15.62 2.99 -172.33 -0.52 -16.14 16 14 C -0.25 -7.07 9.58 -15.06 -0.14 -7.22 16 15 H 0.07 1.83 7.89 -52.48 -0.41 1.41 16 16 C 0.00 0.00 4.90 -17.43 -0.09 -0.09 16 17 N -0.90 -26.93 11.22 55.49 0.62 -26.31 16 18 Si 0.90 22.25 29.59 -169.99 -5.03 17.22 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.15 3.31 6.51 -3.72 -0.02 3.29 16 23 C -0.12 -2.36 5.68 -26.61 -0.15 -2.51 16 24 N -0.64 -7.70 6.35 -11.92 -0.08 -7.77 16 25 H 0.44 4.08 8.96 -40.82 -0.37 3.71 16 26 C 0.13 1.50 7.24 -83.76 -0.61 0.90 16 27 C -0.15 -1.42 10.01 -39.32 -0.39 -1.81 16 28 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 29 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 31 H 0.14 0.70 6.28 -52.48 -0.33 0.37 16 32 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.05 1.05 7.06 -51.93 -0.37 0.68 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 2.51 6.06 -51.93 -0.31 2.19 16 38 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 1.24 7.94 -51.93 -0.41 0.82 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -33.33 352.26 -9.26 -42.59 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.94 Total: -0.21 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -2.86 Total: 2.45 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.54 Total: -60.72 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.20 Total: -6.65 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.33 -9.26 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591909053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.185 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds