Wall clock time and date at job start Tue Mar 31 2020 11:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35957 * 117.00431 * 2 1 4 4 C 1.38828 * 119.98364 * 359.97438 * 3 2 1 5 5 C 1.38105 * 120.25430 * 179.97438 * 4 3 2 6 6 C 1.38654 * 120.03025 * 0.07778 * 5 4 3 7 7 O 1.35697 * 132.50537 * 179.62549 * 6 5 4 8 8 C 1.34699 * 109.31346 * 179.88923 * 7 6 5 9 9 N 1.30355 * 125.54420 * 180.19743 * 8 7 6 10 10 C 1.46505 * 120.00178 * 0.24379 * 9 8 7 11 11 C 1.53040 * 109.45857 * 240.06719 * 10 9 8 12 12 C 1.53200 * 109.30970 * 178.61289 * 11 10 9 13 13 N 1.46925 * 108.77118 * 54.63468 * 12 11 10 14 14 C 1.36937 * 120.62556 * 126.37641 * 13 12 11 15 15 H 1.08004 * 119.99868 * 207.98215 * 14 13 12 16 16 C 1.38811 * 120.00731 * 27.97121 * 14 13 12 17 17 N 1.31621 * 119.99550 * 17.51271 * 16 14 13 18 18 Si 1.86790 * 120.00350 * 197.50573 * 16 14 13 19 19 H 1.48502 * 109.47041 * 94.07164 * 18 16 14 20 20 H 1.48502 * 109.47394 * 214.06892 * 18 16 14 21 21 H 1.48496 * 109.47741 * 334.07049 * 18 16 14 22 22 C 1.46918 * 118.74367 * 306.38803 * 13 12 11 23 23 C 1.53040 * 109.46120 * 119.99821 * 10 9 8 24 24 N 1.37246 * 108.91446 * 0.40856 * 8 7 6 25 25 H 0.97003 * 126.42081 * 179.77926 * 24 8 7 26 26 C 1.39402 * 119.75658 * 359.94490 * 6 5 4 27 27 C 1.38586 * 120.12131 * 0.02562 * 26 6 5 28 28 H 1.09004 * 109.47655 * 59.99959 * 1 2 3 29 29 H 1.08998 * 109.47855 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47084 * 299.99879 * 1 2 3 31 31 H 1.08005 * 119.87288 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.98784 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.45714 * 0.02978 * 10 9 8 34 34 H 1.09001 * 109.49903 * 298.56123 * 11 10 9 35 35 H 1.08999 * 109.49660 * 58.66451 * 11 10 9 36 36 H 1.08997 * 109.58386 * 294.84819 * 12 11 10 37 37 H 1.08997 * 109.58178 * 174.42503 * 12 11 10 38 38 H 0.96994 * 120.00151 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.58925 * 293.82450 * 22 13 12 40 40 H 1.08999 * 109.70787 * 173.47146 * 22 13 12 41 41 H 1.08995 * 109.49803 * 301.34135 * 23 10 9 42 42 H 1.08996 * 109.49703 * 61.43479 * 23 10 9 43 43 H 1.08001 * 120.10078 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2899 2.3755 -0.0005 5 6 1.9112 3.6089 0.0000 6 6 3.2954 3.6886 -0.0006 7 8 4.1532 4.7401 -0.0068 8 6 5.4198 4.2817 -0.0017 9 7 6.4933 5.0212 -0.0018 10 6 6.3769 6.4816 -0.0023 11 6 7.0543 7.0466 -1.2529 12 6 6.9004 8.5708 -1.2676 13 7 7.4199 9.1106 -0.0037 14 6 8.3695 10.0972 -0.0045 15 1 9.0605 10.1824 0.8212 16 6 8.4444 10.9879 -1.0666 17 7 7.4250 11.1186 -1.8888 18 14 9.9917 12.0009 -1.3288 19 1 10.8843 11.3020 -2.2880 20 1 9.6250 13.3327 -1.8741 21 1 10.6960 12.1736 -0.0329 22 6 6.9014 8.5718 1.2609 23 6 7.0552 7.0477 1.2473 24 7 5.3963 2.9095 -0.0013 25 1 6.1669 2.3203 -0.0011 26 6 4.0557 2.5202 -0.0005 27 6 3.4303 1.2835 -0.0004 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2115 2.3163 -0.0005 32 1 1.3185 4.5118 0.0000 33 1 5.3235 6.7618 -0.0021 34 1 8.1131 6.7880 -1.2414 35 1 6.5859 6.6251 -2.1423 36 1 5.8469 8.8306 -1.3704 37 1 7.4647 8.9869 -2.1022 38 1 7.4773 11.7407 -2.6312 39 1 5.8480 8.8318 1.3643 40 1 7.4642 8.9884 2.0962 41 1 6.5876 6.6268 2.1373 42 1 8.1140 6.7890 1.2352 43 1 4.0197 0.3785 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591909053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:01 Heat of formation + Delta-G solvation = 9.522567 kcal Electronic energy + Delta-G solvation = -25815.017343 eV Core-core repulsion = 22054.970209 eV Total energy + Delta-G solvation = -3760.047134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.85259 -40.72884 -39.43080 -37.77802 -36.59880 -35.81657 -33.86147 -31.92610 -31.68145 -31.28824 -29.38249 -28.02850 -26.89934 -24.29458 -24.13800 -23.82257 -23.80623 -22.32381 -20.78183 -19.54791 -19.43069 -18.66227 -17.91568 -17.78914 -16.87491 -16.83861 -16.57862 -16.56603 -15.89204 -15.70947 -15.37222 -15.10747 -14.86194 -14.61623 -14.42112 -14.20063 -14.01309 -13.68041 -13.26453 -13.16438 -13.04340 -13.00752 -12.92388 -12.61486 -12.32465 -12.09957 -12.02218 -11.90622 -11.85257 -11.48904 -11.37492 -10.73963 -10.60131 -10.42402 -9.49542 -8.72908 -8.60948 -7.88363 -5.34175 0.02689 0.16903 1.30273 1.34123 1.46878 1.48925 1.58203 1.71620 2.43345 2.49957 2.51214 3.23638 3.30404 3.61532 3.71089 3.84027 3.91480 4.06192 4.12829 4.13971 4.24101 4.37712 4.45360 4.47582 4.50778 4.58483 4.64740 4.81254 4.84106 4.91630 4.92120 4.99691 5.05310 5.10870 5.15135 5.16923 5.28947 5.31903 5.46176 5.62749 5.67386 5.98577 6.18819 6.36224 6.37791 6.89819 7.12442 7.82426 8.36462 9.19043 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.039576 B = 0.002318 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.329349 B =12076.061090 C =12284.347053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.150 3.850 4 C -0.191 4.191 5 C -0.043 4.043 6 C -0.038 4.038 7 O -0.273 6.273 8 C 0.523 3.477 9 N -0.578 5.578 10 C 0.117 3.883 11 C -0.111 4.111 12 C 0.183 3.817 13 N -0.610 5.610 14 C -0.263 4.263 15 H 0.069 0.931 16 C -0.053 4.053 17 N -0.936 5.936 18 Si 0.971 3.029 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.266 1.266 22 C 0.145 3.855 23 C -0.104 4.104 24 N -0.627 5.627 25 H 0.454 0.546 26 C 0.122 3.878 27 C -0.151 4.151 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.176 0.824 32 H 0.156 0.844 33 H 0.038 0.962 34 H 0.054 0.946 35 H 0.052 0.948 36 H -0.003 1.003 37 H 0.059 0.941 38 H 0.251 0.749 39 H 0.014 0.986 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.221 -25.896 4.418 30.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.103 3.897 4 C -0.211 4.211 5 C -0.063 4.063 6 C -0.085 4.085 7 O -0.170 6.170 8 C 0.212 3.788 9 N -0.327 5.327 10 C 0.007 3.993 11 C -0.151 4.151 12 C 0.056 3.944 13 N -0.333 5.333 14 C -0.393 4.393 15 H 0.087 0.913 16 C -0.248 4.248 17 N -0.582 5.582 18 Si 0.799 3.201 19 H -0.213 1.213 20 H -0.220 1.220 21 H -0.191 1.191 22 C 0.019 3.981 23 C -0.144 4.144 24 N -0.266 5.266 25 H 0.299 0.701 26 C 0.021 3.979 27 C -0.173 4.173 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.089 0.911 31 H 0.193 0.807 32 H 0.173 0.827 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.015 0.985 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.032 0.968 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.430 -25.712 4.313 30.295 hybrid contribution 0.381 1.113 -0.449 1.259 sum -15.049 -24.599 3.864 29.095 Atomic orbital electron populations 1.23465 0.75729 1.05966 1.02872 1.86073 1.23895 1.25588 1.88191 1.18529 0.91053 0.85245 0.94920 1.21280 1.01967 0.89502 1.08322 1.20110 0.88006 1.00139 0.98001 1.19529 0.93093 0.83445 1.12417 1.84987 1.15657 1.33524 1.82841 1.21967 0.80502 0.85218 0.91141 1.72846 1.16888 1.07723 1.35240 1.20980 0.97619 0.84317 0.96345 1.22012 1.00083 0.96949 0.96017 1.20542 0.95204 0.89145 0.89484 1.44323 1.46466 1.41701 1.00849 1.19553 1.07229 1.05870 1.06654 0.91341 1.25863 1.00230 0.98816 0.99936 1.70199 1.30203 1.39053 1.18766 0.85192 0.79375 0.77329 0.78192 1.21314 1.21988 1.19078 1.21027 0.96178 0.92054 0.88866 1.21874 1.00560 0.96008 0.95963 1.42084 1.07030 1.03360 1.74162 0.70135 1.18200 0.82987 0.94782 1.01934 1.19123 0.92434 0.94951 1.10802 0.91130 0.86239 0.91060 0.80660 0.82656 0.94407 0.92755 0.92962 0.98537 0.92273 0.94022 0.96784 0.91835 0.91446 0.92242 0.82390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.17 16 2 O -0.32 -3.92 10.50 -93.07 -0.98 -4.89 16 3 C 0.15 2.15 6.68 22.50 0.15 2.30 16 4 C -0.19 -2.37 9.03 22.38 0.20 -2.17 16 5 C -0.04 -0.76 10.06 22.34 0.22 -0.54 16 6 C -0.04 -0.93 7.32 22.65 0.17 -0.76 16 7 O -0.27 -8.78 9.65 -20.84 -0.20 -8.98 16 8 C 0.52 16.53 8.86 179.59 1.59 18.13 16 9 N -0.58 -21.05 10.23 -445.54 -4.56 -25.60 16 10 C 0.12 4.78 2.81 45.02 0.13 4.91 16 11 C -0.11 -4.95 5.69 30.67 0.17 -4.78 16 12 C 0.18 9.68 5.31 86.37 0.46 10.14 16 13 N -0.61 -33.08 2.99 -699.12 -2.09 -35.17 16 14 C -0.26 -15.20 9.58 84.03 0.81 -14.40 16 15 H 0.07 3.84 7.89 -2.91 -0.02 3.81 16 16 C -0.05 -3.10 4.90 84.86 0.42 -2.68 16 17 N -0.94 -57.52 11.22 21.65 0.24 -57.28 16 18 Si 0.97 46.44 29.59 68.60 2.03 48.47 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 20 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 C 0.14 6.60 6.51 86.36 0.56 7.16 16 23 C -0.10 -4.17 5.68 30.67 0.17 -4.00 16 24 N -0.63 -14.53 6.35 -302.35 -1.92 -16.45 16 25 H 0.45 7.89 8.96 -92.71 -0.83 7.06 16 26 C 0.12 2.61 7.24 38.27 0.28 2.88 16 27 C -0.15 -2.46 10.01 22.44 0.22 -2.23 16 28 H 0.07 0.14 7.66 -2.39 -0.02 0.12 16 29 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.07 0.13 7.66 -2.39 -0.02 0.11 16 31 H 0.18 0.94 6.28 -2.91 -0.02 0.92 16 32 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.04 1.61 7.06 -2.39 -0.02 1.59 16 34 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.05 2.20 8.14 -2.39 -0.02 2.19 16 36 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.06 3.47 6.06 -2.39 -0.01 3.45 16 38 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 2.76 7.94 -2.39 -0.02 2.74 16 41 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -73.76 352.26 -0.60 -74.36 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.21 Total: 10.41 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 6.67 Total: 15.13 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -8.33 Total: -134.51 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.18 Total: -13.87 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -73.76 -0.60 -74.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591909053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.887 kcal (2) G-P(sol) polarization free energy of solvation -73.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds