Wall clock time and date at job start Tue Mar 31 2020 11:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99476 * 2 1 4 4 C 1.53003 * 109.46662 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47121 * 64.99956 * 4 3 2 6 6 C 1.46493 * 120.00324 * 270.00122 * 5 4 3 7 7 C 1.50703 * 109.46935 * 269.99839 * 6 5 4 8 8 H 1.07995 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99929 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99973 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47051 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47283 * 119.99745 * 11 9 7 14 14 H 1.48507 * 109.46852 * 240.00107 * 11 9 7 15 15 C 1.34782 * 119.99946 * 89.99547 * 5 4 3 16 16 O 1.21278 * 120.00162 * 180.02562 * 15 5 4 17 17 C 1.50699 * 119.99762 * 0.02562 * 15 5 4 18 18 C 1.50706 * 109.47222 * 179.97438 * 17 15 5 19 19 C 1.38541 * 126.21162 * 265.00260 * 18 17 15 20 20 N 1.31486 * 109.00658 * 179.97438 * 19 18 17 21 21 N 1.40040 * 108.91563 * 359.97438 * 20 19 18 22 22 C 1.36529 * 132.43543 * 179.97438 * 21 20 19 23 23 C 1.34934 * 120.66189 * 179.97438 * 22 21 20 24 24 C 1.40473 * 120.43067 * 0.02562 * 23 22 21 25 25 C 1.36056 * 119.59175 * 0.02562 * 24 23 22 26 26 C 1.37140 * 107.44206 * 0.02562 * 21 20 19 27 27 H 1.08995 * 109.47614 * 300.00248 * 1 2 3 28 28 H 1.09007 * 109.47101 * 60.00631 * 1 2 3 29 29 H 1.09007 * 109.46853 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46986 * 59.99872 * 3 2 1 31 31 H 1.08999 * 109.47409 * 299.99462 * 3 2 1 32 32 H 1.09000 * 109.47276 * 305.00193 * 4 3 2 33 33 H 1.08997 * 109.46809 * 184.99716 * 4 3 2 34 34 H 1.09000 * 109.47291 * 29.99700 * 6 5 4 35 35 H 1.08998 * 109.47371 * 149.99668 * 6 5 4 36 36 H 0.96998 * 119.99559 * 179.97438 * 10 9 7 37 37 H 1.09001 * 109.47571 * 59.99817 * 17 15 5 38 38 H 1.09001 * 109.47439 * 299.99372 * 17 15 5 39 39 H 1.08003 * 125.50011 * 359.97438 * 19 18 17 40 40 H 1.07997 * 119.66852 * 0.02562 * 22 21 20 41 41 H 1.08000 * 119.78550 * 179.75136 * 23 22 21 42 42 H 1.07998 * 120.20517 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.39088 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1062 -0.8924 -1.3404 7 6 5.5017 -1.2980 -0.9413 8 1 6.2203 -0.5460 -0.6506 9 6 5.8611 -2.6291 -0.9474 10 7 4.9859 -3.5449 -1.3009 11 14 7.5906 -3.1318 -0.4520 12 1 8.3761 -1.9218 -0.0999 13 1 7.5254 -4.0391 0.7217 14 1 8.2455 -3.8342 -1.5848 15 6 4.2632 1.3330 -2.3201 16 8 4.6281 0.8192 -3.3563 17 6 4.1303 2.8313 -2.2279 18 6 4.5078 3.4513 -3.5486 19 6 5.7539 3.9497 -3.8924 20 7 5.7065 4.4097 -5.1233 21 7 4.4135 4.2236 -5.6279 22 6 3.8432 4.5200 -6.8325 23 6 2.5471 4.2295 -7.0703 24 6 1.7621 3.6164 -6.0798 25 6 2.3160 3.3157 -4.8740 26 6 3.6698 3.6260 -4.6428 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6884 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8507 0.5686 0.8427 33 1 3.9783 2.1766 0.0902 34 1 3.3858 -1.3631 -0.6714 35 1 3.9138 -1.2121 -2.3645 36 1 5.2389 -4.4813 -1.3055 37 1 4.7923 3.2076 -1.4479 38 1 3.0996 3.0905 -1.9860 39 1 6.6240 3.9590 -3.2526 40 1 4.4355 4.9910 -7.6029 41 1 2.1093 4.4739 -8.0268 42 1 0.7250 3.3858 -6.2739 43 1 1.7244 2.8439 -4.1034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592763099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:19 Heat of formation + Delta-G solvation = 31.692552 kcal Electronic energy + Delta-G solvation = -26643.778951 eV Core-core repulsion = 22884.693179 eV Total energy + Delta-G solvation = -3759.085771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.92061 -39.01042 -37.49721 -37.11293 -34.72430 -33.43897 -32.57928 -30.74023 -30.51099 -29.48877 -27.46944 -26.11836 -25.75249 -23.75308 -22.83018 -22.66877 -22.28137 -20.56282 -18.29632 -17.13050 -16.71599 -16.68449 -16.35922 -16.08041 -15.85596 -15.55167 -15.23643 -14.97399 -14.79324 -14.61672 -14.12858 -13.98611 -13.33760 -13.03129 -12.87137 -12.53117 -12.18839 -11.95870 -11.85033 -11.72453 -11.68225 -11.62796 -11.40049 -11.15876 -10.85533 -10.77368 -10.52157 -10.35542 -10.32819 -10.04812 -9.48342 -9.41625 -9.25661 -8.77260 -8.30701 -7.51714 -7.38376 -5.91762 -3.95343 0.78558 1.15191 2.34229 2.81559 3.36582 3.39546 3.43724 3.47302 3.56053 4.04477 4.14568 4.27157 4.55251 4.64983 4.70912 4.86978 5.02045 5.17833 5.25314 5.31998 5.39585 5.42134 5.46561 5.50526 5.51208 5.56736 5.59888 5.65671 5.72906 5.80709 5.86586 5.93085 6.06344 6.27219 6.29153 6.38705 6.66361 6.94979 7.35002 7.43000 7.65315 7.66001 7.71951 8.06938 8.39382 8.59494 9.04755 9.25945 9.68672 11.16267 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011459 B = 0.004224 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.848241 B = 6627.050366 C = 8028.031059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.044 3.956 4 C 0.111 3.889 5 N -0.592 5.592 6 C 0.250 3.750 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.060 3.940 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.501 3.499 16 O -0.532 6.532 17 C -0.060 4.060 18 C -0.216 4.216 19 C 0.092 3.908 20 N -0.324 5.324 21 N -0.276 5.276 22 C 0.109 3.891 23 C -0.168 4.168 24 C -0.093 4.093 25 C -0.100 4.100 26 C 0.114 3.886 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.037 0.963 36 H 0.260 0.740 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.190 0.810 40 H 0.164 0.836 41 H 0.151 0.849 42 H 0.138 0.862 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.401 18.158 -2.990 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.034 4.034 4 C -0.014 4.014 5 N -0.324 5.324 6 C 0.131 3.869 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.722 3.278 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.211 1.211 15 C 0.287 3.713 16 O -0.408 6.408 17 C -0.101 4.101 18 C -0.228 4.228 19 C -0.084 4.084 20 N -0.147 5.147 21 N -0.043 5.043 22 C -0.016 4.016 23 C -0.190 4.190 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.005 4.005 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.207 0.793 40 H 0.181 0.819 41 H 0.168 0.832 42 H 0.156 0.844 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.283 18.075 -4.462 20.804 hybrid contribution 0.286 -0.628 0.931 1.159 sum -8.997 17.447 -3.531 19.945 Atomic orbital electron populations 1.22697 0.82141 1.02575 0.99045 1.88119 1.18627 1.26969 1.95114 1.23132 0.95522 0.85397 0.99398 1.21508 0.91040 0.99031 0.89780 1.48183 1.64651 1.09776 1.09810 1.19266 0.96578 0.72351 0.98677 1.21528 0.97573 0.92155 1.44876 0.92616 1.24914 0.97244 0.96480 0.95493 1.69959 1.34184 1.00847 1.48393 0.86506 0.84786 0.78454 0.78024 1.19864 1.21069 1.21057 1.20390 0.78546 0.88260 0.84100 1.90674 1.45922 1.74796 1.29446 1.20004 1.02638 0.93401 0.94078 1.19327 0.93347 1.13188 0.96902 1.23627 0.97778 0.94443 0.92581 1.77816 0.93860 1.30486 1.12584 1.46088 1.09060 1.39089 1.10078 1.21401 0.94358 0.99705 0.86112 1.20762 0.92606 1.04199 1.01459 1.21078 1.00561 0.97328 0.92644 1.20599 0.91770 1.00769 0.98832 1.19240 0.92932 0.98468 0.89845 0.94698 0.94667 0.89815 0.93125 0.93818 0.89060 0.90013 0.93771 0.94494 0.92996 0.88586 0.89523 0.79345 0.81869 0.83165 0.84437 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.24 9.53 -35.23 -0.34 -6.57 16 3 C 0.04 0.59 6.28 37.16 0.23 0.83 16 4 C 0.11 1.75 5.62 -4.04 -0.02 1.73 16 5 N -0.59 -12.54 2.42 -175.06 -0.42 -12.97 16 6 C 0.25 6.75 4.98 -5.20 -0.03 6.72 16 7 C -0.52 -15.19 9.39 -34.44 -0.32 -15.52 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 11 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 14 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 15 C 0.50 10.45 7.67 -10.98 -0.08 10.37 16 16 O -0.53 -13.89 15.61 5.56 0.09 -13.80 16 17 C -0.06 -0.89 4.74 -29.03 -0.14 -1.03 16 18 C -0.22 -3.49 4.68 -104.25 -0.49 -3.97 16 19 C 0.09 1.45 11.87 -17.59 -0.21 1.24 16 20 N -0.32 -5.38 12.66 30.46 0.39 -5.00 16 21 N -0.28 -4.23 3.90 -10.71 -0.04 -4.27 16 22 C 0.11 1.24 11.19 -16.63 -0.19 1.05 16 23 C -0.17 -1.54 9.98 -39.91 -0.40 -1.94 16 24 C -0.09 -0.94 10.07 -39.52 -0.40 -1.34 16 25 C -0.10 -1.29 10.09 -39.40 -0.40 -1.69 16 26 C 0.11 1.78 6.76 -84.27 -0.57 1.21 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.55 7.30 -51.93 -0.38 0.17 16 32 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 33 H 0.08 0.98 6.44 -51.93 -0.33 0.64 16 34 H 0.04 1.24 7.11 -51.93 -0.37 0.87 16 35 H 0.04 1.14 7.42 -51.93 -0.39 0.76 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.10 1.18 7.40 -51.93 -0.38 0.79 16 38 H 0.09 1.05 7.26 -51.93 -0.38 0.67 16 39 H 0.19 2.41 8.06 -52.48 -0.42 1.99 16 40 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -39.00 368.03 -7.06 -46.05 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.00 Total: -0.60 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.99 Total: 0.86 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.66 Total: -48.94 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.25 Total: -20.37 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.00 -7.06 -46.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592763099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.747 kcal (2) G-P(sol) polarization free energy of solvation -38.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds