Wall clock time and date at job start Tue Mar 31 2020 11:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99476 * 2 1 4 4 C 1.53003 * 109.46662 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47121 * 64.99956 * 4 3 2 6 6 C 1.46493 * 120.00324 * 270.00122 * 5 4 3 7 7 C 1.50703 * 109.46935 * 269.99839 * 6 5 4 8 8 H 1.07995 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99929 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99973 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47051 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47283 * 119.99745 * 11 9 7 14 14 H 1.48507 * 109.46852 * 240.00107 * 11 9 7 15 15 C 1.34782 * 119.99946 * 89.99547 * 5 4 3 16 16 O 1.21278 * 120.00162 * 180.02562 * 15 5 4 17 17 C 1.50699 * 119.99762 * 0.02562 * 15 5 4 18 18 C 1.50706 * 109.47222 * 179.97438 * 17 15 5 19 19 C 1.38541 * 126.21162 * 265.00260 * 18 17 15 20 20 N 1.31486 * 109.00658 * 179.97438 * 19 18 17 21 21 N 1.40040 * 108.91563 * 359.97438 * 20 19 18 22 22 C 1.36529 * 132.43543 * 179.97438 * 21 20 19 23 23 C 1.34934 * 120.66189 * 179.97438 * 22 21 20 24 24 C 1.40473 * 120.43067 * 0.02562 * 23 22 21 25 25 C 1.36056 * 119.59175 * 0.02562 * 24 23 22 26 26 C 1.37140 * 107.44206 * 0.02562 * 21 20 19 27 27 H 1.08995 * 109.47614 * 300.00248 * 1 2 3 28 28 H 1.09007 * 109.47101 * 60.00631 * 1 2 3 29 29 H 1.09007 * 109.46853 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46986 * 59.99872 * 3 2 1 31 31 H 1.08999 * 109.47409 * 299.99462 * 3 2 1 32 32 H 1.09000 * 109.47276 * 305.00193 * 4 3 2 33 33 H 1.08997 * 109.46809 * 184.99716 * 4 3 2 34 34 H 1.09000 * 109.47291 * 29.99700 * 6 5 4 35 35 H 1.08998 * 109.47371 * 149.99668 * 6 5 4 36 36 H 0.96998 * 119.99559 * 179.97438 * 10 9 7 37 37 H 1.09001 * 109.47571 * 59.99817 * 17 15 5 38 38 H 1.09001 * 109.47439 * 299.99372 * 17 15 5 39 39 H 1.08003 * 125.50011 * 359.97438 * 19 18 17 40 40 H 1.07997 * 119.66852 * 0.02562 * 22 21 20 41 41 H 1.08000 * 119.78550 * 179.75136 * 23 22 21 42 42 H 1.07998 * 120.20517 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.39088 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1062 -0.8924 -1.3404 7 6 5.5017 -1.2980 -0.9413 8 1 6.2203 -0.5460 -0.6506 9 6 5.8611 -2.6291 -0.9474 10 7 4.9859 -3.5449 -1.3009 11 14 7.5906 -3.1318 -0.4520 12 1 8.3761 -1.9218 -0.0999 13 1 7.5254 -4.0391 0.7217 14 1 8.2455 -3.8342 -1.5848 15 6 4.2632 1.3330 -2.3201 16 8 4.6281 0.8192 -3.3563 17 6 4.1303 2.8313 -2.2279 18 6 4.5078 3.4513 -3.5486 19 6 5.7539 3.9497 -3.8924 20 7 5.7065 4.4097 -5.1233 21 7 4.4135 4.2236 -5.6279 22 6 3.8432 4.5200 -6.8325 23 6 2.5471 4.2295 -7.0703 24 6 1.7621 3.6164 -6.0798 25 6 2.3160 3.3157 -4.8740 26 6 3.6698 3.6260 -4.6428 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6884 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8507 0.5686 0.8427 33 1 3.9783 2.1766 0.0902 34 1 3.3858 -1.3631 -0.6714 35 1 3.9138 -1.2121 -2.3645 36 1 5.2389 -4.4813 -1.3055 37 1 4.7923 3.2076 -1.4479 38 1 3.0996 3.0905 -1.9860 39 1 6.6240 3.9590 -3.2526 40 1 4.4355 4.9910 -7.6029 41 1 2.1093 4.4739 -8.0268 42 1 0.7250 3.3858 -6.2739 43 1 1.7244 2.8439 -4.1034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592763099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:18 Heat of formation + Delta-G solvation = 4.409832 kcal Electronic energy + Delta-G solvation = -26644.962018 eV Core-core repulsion = 22884.693179 eV Total energy + Delta-G solvation = -3760.268839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.94427 -40.58106 -38.68155 -38.09066 -36.41536 -34.85197 -34.37572 -31.92376 -31.52944 -30.88690 -29.09956 -27.38678 -27.02677 -24.73009 -24.63206 -23.88799 -23.43340 -21.72984 -19.81107 -18.59922 -18.16154 -17.98617 -17.69935 -17.27431 -16.92752 -16.70888 -16.58075 -16.38178 -16.04968 -15.89915 -15.60926 -15.27758 -14.52751 -14.35099 -14.32240 -13.99742 -13.54012 -13.33140 -13.16214 -12.99396 -12.81725 -12.74650 -12.66312 -12.64003 -12.52817 -12.44872 -12.15271 -11.85703 -11.63378 -11.60293 -11.37047 -10.60477 -10.51552 -10.42698 -10.25473 -9.30939 -8.42384 -8.16519 -6.30957 -0.10864 0.19109 1.35941 1.38671 1.39786 1.50425 1.68377 1.98498 2.36570 2.45496 2.66158 3.05215 3.12958 3.32414 3.74088 3.90423 3.94741 3.98890 4.17804 4.21335 4.29211 4.36799 4.40087 4.50146 4.58339 4.59858 4.60400 4.67997 4.73557 4.76615 4.90640 5.00404 5.06052 5.14609 5.27661 5.33041 5.34950 5.53353 5.61996 5.64854 5.96175 5.98682 6.15513 6.42283 6.59209 6.79423 6.96174 7.34959 7.64770 8.90467 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011459 B = 0.004224 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.848241 B = 6627.050366 C = 8028.031059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.044 3.956 4 C 0.103 3.897 5 N -0.597 5.597 6 C 0.273 3.727 7 C -0.539 4.539 8 H 0.054 0.946 9 C 0.004 3.996 10 N -0.931 5.931 11 Si 0.966 3.034 12 H -0.265 1.265 13 H -0.269 1.269 14 H -0.285 1.285 15 C 0.495 3.505 16 O -0.597 6.597 17 C -0.039 4.039 18 C -0.252 4.252 19 C 0.079 3.921 20 N -0.360 5.360 21 N -0.286 5.286 22 C 0.081 3.919 23 C -0.150 4.150 24 C -0.075 4.075 25 C -0.135 4.135 26 C 0.100 3.900 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.026 0.974 35 H -0.017 1.017 36 H 0.264 0.736 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.206 0.794 40 H 0.188 0.812 41 H 0.197 0.803 42 H 0.175 0.825 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.528 20.399 -2.806 23.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.033 4.033 4 C -0.020 4.020 5 N -0.328 5.328 6 C 0.152 3.848 7 C -0.577 4.577 8 H 0.072 0.928 9 C -0.194 4.194 10 N -0.571 5.571 11 Si 0.790 3.210 12 H -0.189 1.189 13 H -0.194 1.194 14 H -0.211 1.211 15 C 0.284 3.716 16 O -0.478 6.478 17 C -0.080 4.080 18 C -0.263 4.263 19 C -0.096 4.096 20 N -0.184 5.184 21 N -0.052 5.052 22 C -0.043 4.043 23 C -0.171 4.171 24 C -0.098 4.098 25 C -0.154 4.154 26 C -0.019 4.019 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.146 0.854 34 H 0.044 0.956 35 H 0.001 0.999 36 H 0.073 0.927 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.222 0.778 40 H 0.205 0.795 41 H 0.214 0.786 42 H 0.193 0.807 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.432 20.368 -4.234 23.272 hybrid contribution 0.458 -1.306 0.713 1.556 sum -9.974 19.062 -3.521 21.800 Atomic orbital electron populations 1.22841 0.80154 1.02894 1.00872 1.88058 1.21068 1.29225 1.95531 1.23217 0.93463 0.84692 1.01927 1.21914 0.93280 1.00381 0.86393 1.48149 1.64770 1.07589 1.12251 1.18562 0.95259 0.76384 0.94620 1.21834 0.98442 0.92545 1.44916 0.92806 1.25870 1.01749 0.96495 0.95287 1.70093 1.36461 1.01304 1.49239 0.85397 0.79227 0.78405 0.77942 1.18877 1.19396 1.21071 1.21502 0.76651 0.90734 0.82674 1.90633 1.48758 1.76487 1.31891 1.19935 1.05315 0.87891 0.94828 1.19527 0.93851 1.15022 0.97936 1.23981 0.98496 0.94397 0.92763 1.77695 0.95201 1.32260 1.13221 1.46381 1.08706 1.39024 1.11116 1.22196 0.95821 1.00610 0.85669 1.21397 0.91440 1.01520 1.02782 1.21653 1.02249 0.94524 0.91332 1.20868 0.91058 1.02754 1.00746 1.19706 0.94099 0.98131 0.89992 0.91962 0.93570 0.90455 0.88987 0.92529 0.90823 0.85414 0.95604 0.99931 0.92679 0.85529 0.86277 0.77751 0.79481 0.78585 0.80717 0.83434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.42 -14.05 9.53 -148.98 -1.42 -15.47 16 3 C 0.04 1.10 6.28 71.98 0.45 1.56 16 4 C 0.10 3.12 5.62 86.38 0.49 3.60 16 5 N -0.60 -25.85 2.42 -826.15 -2.00 -27.84 16 6 C 0.27 15.59 4.98 85.64 0.43 16.02 16 7 C -0.54 -32.48 9.39 25.60 0.24 -32.24 16 8 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 9 C 0.00 0.25 5.46 84.66 0.46 0.72 16 10 N -0.93 -59.14 13.29 21.45 0.28 -58.85 16 11 Si 0.97 46.89 29.54 68.60 2.03 48.91 16 12 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 15 C 0.50 21.08 7.67 87.66 0.67 21.75 16 16 O -0.60 -32.83 15.61 -3.02 -0.05 -32.88 16 17 C -0.04 -1.12 4.74 29.10 0.14 -0.98 16 18 C -0.25 -8.13 4.68 -19.63 -0.09 -8.22 16 19 C 0.08 2.54 11.87 84.82 1.01 3.54 16 20 N -0.36 -12.20 12.66 -57.54 -0.73 -12.93 16 21 N -0.29 -8.69 3.90 -187.79 -0.73 -9.42 16 22 C 0.08 1.70 11.19 83.20 0.93 2.63 16 23 C -0.15 -2.21 9.98 22.05 0.22 -1.99 16 24 C -0.07 -1.26 10.07 22.31 0.22 -1.04 16 25 C -0.13 -3.30 10.09 22.39 0.23 -3.07 16 26 C 0.10 3.12 6.76 39.10 0.26 3.38 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.26 7.30 -2.39 -0.02 1.25 16 32 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 33 H 0.13 2.63 6.44 -2.39 -0.02 2.62 16 34 H 0.03 1.55 7.11 -2.39 -0.02 1.53 16 35 H -0.02 -1.17 7.42 -2.39 -0.02 -1.19 16 36 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 37 H 0.13 2.78 7.40 -2.39 -0.02 2.76 16 38 H 0.12 2.57 7.26 -2.39 -0.02 2.55 16 39 H 0.21 5.36 8.06 -2.91 -0.02 5.34 16 40 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 41 H 0.20 1.05 8.06 -2.91 -0.02 1.02 16 42 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -93.10 368.03 5.30 -87.80 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.01 Total: 13.12 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 6.91 Total: 7.57 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -3.17 Total: -109.05 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -1.47 Total: -48.35 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -93.10 5.30 -87.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592763099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.205 kcal (2) G-P(sol) polarization free energy of solvation -93.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds