Wall clock time and date at job start Tue Mar 31 2020 11:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99603 * 2 1 4 4 H 1.09003 * 108.45046 * 32.30842 * 3 2 1 5 5 C 1.52569 * 108.51187 * 274.76448 * 3 2 1 6 6 C 1.50879 * 109.35931 * 153.73843 * 5 3 2 7 7 C 1.53946 * 110.09856 * 91.88561 * 6 5 3 8 8 N 1.47609 * 112.13860 * 319.43386 * 7 6 5 9 9 S 1.65601 * 118.64072 * 137.88925 * 8 7 6 10 10 O 1.42100 * 104.27720 * 26.04929 * 9 8 7 11 11 O 1.42101 * 104.27700 * 153.90341 * 9 8 7 12 12 C 1.81395 * 104.45239 * 269.97908 * 9 8 7 13 13 C 1.53000 * 109.47290 * 173.40821 * 12 9 8 14 14 C 1.50691 * 115.55059 * 39.95155 * 13 12 9 15 15 H 1.08007 * 120.00143 * 264.83248 * 14 13 12 16 16 C 1.37876 * 120.00277 * 84.83465 * 14 13 12 17 17 N 1.31513 * 119.99599 * 353.15299 * 16 14 13 18 18 Si 1.86799 * 120.00382 * 173.15489 * 16 14 13 19 19 H 1.48505 * 109.46935 * 89.99620 * 18 16 14 20 20 H 1.48497 * 109.47140 * 209.99769 * 18 16 14 21 21 H 1.48502 * 109.47098 * 330.00251 * 18 16 14 22 22 C 1.53002 * 117.49666 * 254.24607 * 13 12 9 23 23 C 1.52995 * 60.00206 * 252.51154 * 22 13 12 24 24 C 1.44571 * 122.71661 * 317.86768 * 8 7 6 25 25 C 1.47094 * 108.51012 * 150.00090 * 3 2 1 26 26 H 1.09003 * 109.47353 * 300.00108 * 1 2 3 27 27 H 1.08995 * 109.47304 * 60.00765 * 1 2 3 28 28 H 1.09001 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.48646 * 273.70214 * 5 3 2 30 30 H 1.08994 * 109.49071 * 33.76812 * 5 3 2 31 31 H 1.08995 * 109.36343 * 331.68957 * 6 5 3 32 32 H 1.09005 * 109.36336 * 212.07664 * 6 5 3 33 33 H 1.08997 * 108.94783 * 198.75077 * 7 6 5 34 34 H 1.09001 * 108.94639 * 80.11695 * 7 6 5 35 35 H 1.09000 * 109.47096 * 293.40727 * 12 9 8 36 36 H 1.09001 * 109.47070 * 53.40290 * 12 9 8 37 37 H 0.97002 * 120.00291 * 185.03345 * 17 16 14 38 38 H 1.09001 * 117.49951 * 359.97438 * 22 13 12 39 39 H 1.09001 * 117.50092 * 145.01816 * 22 13 12 40 40 H 1.09003 * 117.50002 * 252.51477 * 23 22 13 41 41 H 1.09001 * 117.50598 * 107.48834 * 23 22 13 42 42 H 1.09005 * 109.44670 * 330.69261 * 24 8 7 43 43 H 1.08995 * 109.43340 * 210.75466 * 24 8 7 44 44 H 1.08998 * 109.32559 * 304.31156 * 25 3 2 45 45 H 1.08996 * 109.33317 * 63.96869 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3521 1.9761 0.5526 5 6 2.0974 1.7969 -1.4417 6 6 2.0756 3.3055 -1.4582 7 6 3.5127 3.8558 -1.4167 8 7 4.3736 3.0939 -0.4908 9 16 5.9179 2.7272 -0.9631 10 8 6.2498 3.7452 -1.8973 11 8 6.6342 2.5904 0.2565 12 6 5.7676 1.1230 -1.7965 13 6 7.1101 0.7481 -2.4273 14 6 8.3288 1.0712 -1.6020 15 1 8.8622 1.9960 -1.7656 16 6 8.7630 0.1864 -0.6379 17 7 8.0411 -0.8731 -0.3448 18 14 10.3767 0.4923 0.2520 19 1 10.1249 1.3074 1.4675 20 1 10.9802 -0.8069 0.6434 21 1 11.3079 1.2196 -0.6476 22 6 7.2340 0.8672 -3.9476 23 6 7.1566 -0.5131 -3.2922 24 6 3.9245 2.6551 0.8114 25 6 3.3037 1.2409 0.6974 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.0246 1.4417 -1.8915 30 1 1.2483 1.4147 -2.0082 31 1 1.5243 3.6684 -0.5907 32 1 1.5827 3.6499 -2.3673 33 1 3.4838 4.8974 -1.0969 34 1 3.9396 3.8065 -2.4185 35 1 5.4821 0.3617 -1.0704 36 1 5.0061 1.1873 -2.5738 37 1 8.3085 -1.4562 0.3828 38 1 6.3590 1.2122 -4.4984 39 1 8.1972 1.1795 -4.3512 40 1 8.0689 -1.1090 -3.2645 41 1 6.2308 -1.0759 -3.4117 42 1 3.1757 3.3507 1.1905 43 1 4.7719 2.6253 1.4962 44 1 3.1548 0.8307 1.6962 45 1 3.9824 0.5956 0.1398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594791777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:25 Heat of formation + Delta-G solvation = -93.735560 kcal Electronic energy + Delta-G solvation = -27196.216102 eV Core-core repulsion = 23534.842559 eV Total energy + Delta-G solvation = -3661.373542 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.50748 -36.89853 -36.69044 -36.19828 -34.90079 -32.76154 -32.19955 -32.01161 -28.17636 -27.02095 -26.04390 -25.40696 -24.57383 -21.20845 -21.11545 -20.57653 -19.32729 -18.16996 -17.29721 -16.80933 -16.35871 -15.84453 -15.40381 -15.15593 -15.11824 -14.68476 -14.34506 -14.03769 -13.91688 -13.64560 -13.18192 -12.91517 -12.77597 -12.45087 -12.18899 -12.06291 -11.77356 -11.63277 -11.39385 -11.13319 -11.08686 -11.02598 -10.94720 -10.85494 -10.73851 -10.54169 -10.48027 -10.43985 -10.29031 -10.05884 -9.66565 -9.60089 -8.94650 -8.68741 -8.48981 -8.05437 -6.11868 -4.26759 1.19309 3.35289 3.42636 3.45159 3.45582 3.70252 4.42957 4.54334 4.74469 4.80780 4.86901 5.00953 5.07359 5.17480 5.18094 5.19306 5.22641 5.27672 5.31739 5.40247 5.48075 5.55073 5.64660 5.69905 5.75850 5.85867 5.92986 5.98152 6.11898 6.14124 6.20725 6.24695 6.38618 6.39457 6.44612 6.67795 6.73883 6.99570 7.05347 7.18927 7.23898 7.42797 7.82093 8.22695 8.81618 9.50138 10.95519 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.005315 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.194669 B = 5266.662123 C = 5475.347419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.102 3.898 4 H 0.052 0.948 5 C -0.144 4.144 6 C -0.129 4.129 7 C 0.122 3.878 8 N -1.008 6.008 9 S 2.618 3.382 10 O -0.974 6.974 11 O -0.940 6.940 12 C -0.559 4.559 13 C 0.052 3.948 14 C -0.544 4.544 15 H 0.068 0.932 16 C 0.098 3.902 17 N -0.865 5.865 18 Si 0.888 3.112 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.270 1.270 22 C -0.205 4.205 23 C -0.144 4.144 24 C 0.122 3.878 25 C -0.152 4.152 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.265 0.735 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.124 4.598 0.361 16.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C 0.045 3.955 4 H 0.070 0.930 5 C -0.181 4.181 6 C -0.168 4.168 7 C -0.004 4.004 8 N -0.843 5.843 9 S 2.715 3.285 10 O -0.965 6.965 11 O -0.930 6.930 12 C -0.691 4.691 13 C 0.049 3.951 14 C -0.581 4.581 15 H 0.086 0.914 16 C -0.109 4.109 17 N -0.499 5.499 18 Si 0.715 3.285 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.242 4.242 23 C -0.183 4.183 24 C -0.004 4.004 25 C -0.192 4.192 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.288 4.828 0.639 16.045 hybrid contribution -0.027 -0.449 0.245 0.512 sum -15.315 4.380 0.884 15.954 Atomic orbital electron populations 1.22741 0.81828 1.02398 0.99585 1.88020 1.19047 1.28503 1.95117 1.21066 0.95129 0.84079 0.95257 0.93017 1.21662 1.03480 0.95610 0.97390 1.21708 0.96803 0.95679 1.02585 1.21572 0.90511 0.94906 0.93390 1.57751 1.33618 1.69026 1.23932 1.04914 0.71543 0.76955 0.75061 1.93464 1.81709 1.55509 1.65778 1.93512 1.68422 1.87255 1.43795 1.30106 1.05787 1.21464 1.11782 1.18172 0.89915 0.99440 0.87525 1.20568 1.11052 1.06304 1.20164 0.91405 1.24887 0.96814 0.93697 0.95533 1.69955 1.38135 1.13899 1.27866 0.86623 0.83432 0.77787 0.80682 1.19584 1.20993 1.19445 1.23121 1.00858 1.02545 0.97696 1.22525 1.00729 0.90167 1.04873 1.21185 1.00973 0.93414 0.84855 1.21509 0.96560 0.99052 1.02032 0.94374 0.94280 0.89954 0.90537 0.91362 0.91593 0.90572 0.91715 0.89803 0.85304 0.88833 0.92549 0.91354 0.89731 0.89661 0.91628 0.90588 0.87909 0.89761 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.70 101.05 1.08 1.38 16 2 O -0.39 -5.17 10.21 -35.23 -0.36 -5.53 16 3 C 0.10 1.24 2.08 -29.79 -0.06 1.18 16 4 H 0.05 0.53 6.96 -51.93 -0.36 0.17 16 5 C -0.14 -1.68 5.11 -28.02 -0.14 -1.82 16 6 C -0.13 -1.28 5.71 -27.30 -0.16 -1.44 16 7 C 0.12 1.57 5.90 -2.94 -0.02 1.55 16 8 N -1.01 -15.97 2.47 -113.31 -0.28 -16.25 16 9 S 2.62 56.04 4.47 -107.50 -0.48 55.56 16 10 O -0.97 -22.70 16.70 -57.54 -0.96 -23.67 16 11 O -0.94 -23.32 15.58 -57.54 -0.90 -24.22 16 12 C -0.56 -11.98 5.72 37.16 0.21 -11.77 16 13 C 0.05 1.27 1.64 -155.66 -0.26 1.02 16 14 C -0.54 -15.08 6.91 -34.44 -0.24 -15.32 16 15 H 0.07 1.94 7.82 -52.48 -0.41 1.52 16 16 C 0.10 2.73 5.39 -17.82 -0.10 2.63 16 17 N -0.86 -24.13 12.95 55.43 0.72 -23.41 16 18 Si 0.89 21.95 29.55 -169.99 -5.02 16.92 16 19 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.21 -4.52 9.88 -26.73 -0.26 -4.78 16 23 C -0.14 -3.34 9.49 -26.73 -0.25 -3.59 16 24 C 0.12 1.71 5.60 -4.09 -0.02 1.69 16 25 C -0.15 -2.12 5.30 -28.58 -0.15 -2.27 16 26 H 0.04 0.31 8.06 -51.93 -0.42 -0.11 16 27 H 0.04 0.32 7.35 -51.93 -0.38 -0.06 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.03 6.18 -51.93 -0.32 0.71 16 30 H 0.07 0.72 7.18 -51.93 -0.37 0.35 16 31 H 0.07 0.57 7.31 -51.93 -0.38 0.19 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.12 7.20 -51.93 -0.37 0.75 16 35 H 0.13 2.84 6.56 -51.92 -0.34 2.50 16 36 H 0.09 1.70 6.97 -51.92 -0.36 1.34 16 37 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 38 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 39 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 40 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 43 H 0.10 1.59 6.75 -51.93 -0.35 1.24 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.08 1.33 6.22 -51.93 -0.32 1.01 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -32.92 358.69 -9.57 -42.49 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.33 Total: 4.26 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: -0.37 Total: -31.55 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.44 Total: -39.67 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -2.22 Total: -53.42 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 56.04 SS G_CDS: -0.48 Total: 55.56 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.92 -9.57 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594791777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.245 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds