Wall clock time and date at job start Tue Mar 31 2020 11:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99603 * 2 1 4 4 H 1.09003 * 108.45046 * 32.30842 * 3 2 1 5 5 C 1.52569 * 108.51187 * 274.76448 * 3 2 1 6 6 C 1.50879 * 109.35931 * 153.73843 * 5 3 2 7 7 C 1.53946 * 110.09856 * 91.88561 * 6 5 3 8 8 N 1.47609 * 112.13860 * 319.43386 * 7 6 5 9 9 S 1.65601 * 118.64072 * 137.88925 * 8 7 6 10 10 O 1.42100 * 104.27720 * 26.04929 * 9 8 7 11 11 O 1.42101 * 104.27700 * 153.90341 * 9 8 7 12 12 C 1.81395 * 104.45239 * 269.97908 * 9 8 7 13 13 C 1.53000 * 109.47290 * 173.40821 * 12 9 8 14 14 C 1.50691 * 115.55059 * 39.95155 * 13 12 9 15 15 H 1.08007 * 120.00143 * 264.83248 * 14 13 12 16 16 C 1.37876 * 120.00277 * 84.83465 * 14 13 12 17 17 N 1.31513 * 119.99599 * 353.15299 * 16 14 13 18 18 Si 1.86799 * 120.00382 * 173.15489 * 16 14 13 19 19 H 1.48505 * 109.46935 * 89.99620 * 18 16 14 20 20 H 1.48497 * 109.47140 * 209.99769 * 18 16 14 21 21 H 1.48502 * 109.47098 * 330.00251 * 18 16 14 22 22 C 1.53002 * 117.49666 * 254.24607 * 13 12 9 23 23 C 1.52995 * 60.00206 * 252.51154 * 22 13 12 24 24 C 1.44571 * 122.71661 * 317.86768 * 8 7 6 25 25 C 1.47094 * 108.51012 * 150.00090 * 3 2 1 26 26 H 1.09003 * 109.47353 * 300.00108 * 1 2 3 27 27 H 1.08995 * 109.47304 * 60.00765 * 1 2 3 28 28 H 1.09001 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.48646 * 273.70214 * 5 3 2 30 30 H 1.08994 * 109.49071 * 33.76812 * 5 3 2 31 31 H 1.08995 * 109.36343 * 331.68957 * 6 5 3 32 32 H 1.09005 * 109.36336 * 212.07664 * 6 5 3 33 33 H 1.08997 * 108.94783 * 198.75077 * 7 6 5 34 34 H 1.09001 * 108.94639 * 80.11695 * 7 6 5 35 35 H 1.09000 * 109.47096 * 293.40727 * 12 9 8 36 36 H 1.09001 * 109.47070 * 53.40290 * 12 9 8 37 37 H 0.97002 * 120.00291 * 185.03345 * 17 16 14 38 38 H 1.09001 * 117.49951 * 359.97438 * 22 13 12 39 39 H 1.09001 * 117.50092 * 145.01816 * 22 13 12 40 40 H 1.09003 * 117.50002 * 252.51477 * 23 22 13 41 41 H 1.09001 * 117.50598 * 107.48834 * 23 22 13 42 42 H 1.09005 * 109.44670 * 330.69261 * 24 8 7 43 43 H 1.08995 * 109.43340 * 210.75466 * 24 8 7 44 44 H 1.08998 * 109.32559 * 304.31156 * 25 3 2 45 45 H 1.08996 * 109.33317 * 63.96869 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3521 1.9761 0.5526 5 6 2.0974 1.7969 -1.4417 6 6 2.0756 3.3055 -1.4582 7 6 3.5127 3.8558 -1.4167 8 7 4.3736 3.0939 -0.4908 9 16 5.9179 2.7272 -0.9631 10 8 6.2498 3.7452 -1.8973 11 8 6.6342 2.5904 0.2565 12 6 5.7676 1.1230 -1.7965 13 6 7.1101 0.7481 -2.4273 14 6 8.3288 1.0712 -1.6020 15 1 8.8622 1.9960 -1.7656 16 6 8.7630 0.1864 -0.6379 17 7 8.0411 -0.8731 -0.3448 18 14 10.3767 0.4923 0.2520 19 1 10.1249 1.3074 1.4675 20 1 10.9802 -0.8069 0.6434 21 1 11.3079 1.2196 -0.6476 22 6 7.2340 0.8672 -3.9476 23 6 7.1566 -0.5131 -3.2922 24 6 3.9245 2.6551 0.8114 25 6 3.3037 1.2409 0.6974 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.0246 1.4417 -1.8915 30 1 1.2483 1.4147 -2.0082 31 1 1.5243 3.6684 -0.5907 32 1 1.5827 3.6499 -2.3673 33 1 3.4838 4.8974 -1.0969 34 1 3.9396 3.8065 -2.4185 35 1 5.4821 0.3617 -1.0704 36 1 5.0061 1.1873 -2.5738 37 1 8.3085 -1.4562 0.3828 38 1 6.3590 1.2122 -4.4984 39 1 8.1972 1.1795 -4.3512 40 1 8.0689 -1.1090 -3.2645 41 1 6.2308 -1.0759 -3.4117 42 1 3.1757 3.3507 1.1905 43 1 4.7719 2.6253 1.4962 44 1 3.1548 0.8307 1.6962 45 1 3.9824 0.5956 0.1398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594791777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:25 Heat of formation + Delta-G solvation = -116.129331 kcal Electronic energy + Delta-G solvation = -27197.187168 eV Core-core repulsion = 23534.842559 eV Total energy + Delta-G solvation = -3662.344609 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.46429 -38.55350 -37.96449 -37.90226 -36.68210 -34.11109 -33.75009 -33.23614 -29.91499 -27.83001 -27.57103 -26.96675 -25.54092 -22.98787 -22.37126 -21.49717 -21.13994 -19.61823 -18.74029 -18.30448 -17.82917 -17.07588 -16.87800 -16.59942 -16.30023 -16.23225 -15.75896 -15.48142 -15.22063 -14.92811 -14.66201 -14.12293 -13.97603 -13.78276 -13.69962 -13.42749 -13.11392 -13.04590 -12.93574 -12.83381 -12.79117 -12.70873 -12.42448 -12.26671 -12.12291 -11.92785 -11.90996 -11.79480 -11.63093 -11.51151 -11.39630 -10.86513 -10.52879 -10.44248 -10.09572 -9.75480 -8.22780 -6.41128 -0.44576 1.34751 1.40552 1.45601 2.02294 2.38876 2.85899 3.06250 3.09894 3.29106 3.49238 3.59109 3.86135 3.97659 4.06881 4.12502 4.19921 4.26235 4.27661 4.44016 4.53597 4.53841 4.57492 4.60247 4.62489 4.69794 4.76871 4.83936 4.89307 4.91768 4.95787 5.07435 5.12264 5.15678 5.21787 5.23323 5.31218 5.39904 5.44582 5.58617 5.67830 5.87415 6.19985 6.38564 6.67923 7.36523 8.84022 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.005315 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.194669 B = 5266.662123 C = 5475.347419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.100 3.900 4 H 0.080 0.920 5 C -0.146 4.146 6 C -0.118 4.118 7 C 0.108 3.892 8 N -0.997 5.997 9 S 2.625 3.375 10 O -0.999 6.999 11 O -0.985 6.985 12 C -0.552 4.552 13 C 0.015 3.985 14 C -0.557 4.557 15 H 0.047 0.953 16 C 0.059 3.941 17 N -0.883 5.883 18 Si 0.926 3.074 19 H -0.278 1.278 20 H -0.269 1.269 21 H -0.265 1.265 22 C -0.189 4.189 23 C -0.143 4.143 24 C 0.119 3.881 25 C -0.151 4.151 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.266 0.734 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.854 5.515 -0.016 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C 0.044 3.956 4 H 0.097 0.903 5 C -0.184 4.184 6 C -0.157 4.157 7 C -0.016 4.016 8 N -0.834 5.834 9 S 2.723 3.277 10 O -0.990 6.990 11 O -0.975 6.975 12 C -0.684 4.684 13 C 0.013 3.987 14 C -0.595 4.595 15 H 0.065 0.935 16 C -0.146 4.146 17 N -0.518 5.518 18 Si 0.750 3.250 19 H -0.204 1.204 20 H -0.193 1.193 21 H -0.189 1.189 22 C -0.226 4.226 23 C -0.182 4.182 24 C -0.007 4.007 25 C -0.190 4.190 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.136 0.864 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.005 5.740 0.246 18.899 hybrid contribution 0.737 -0.717 0.353 1.087 sum -17.268 5.023 0.600 17.994 Atomic orbital electron populations 1.22942 0.79896 1.03357 1.00948 1.87981 1.21282 1.29275 1.95333 1.21081 0.94374 0.84404 0.95789 0.90258 1.21693 1.02815 0.96885 0.97004 1.21698 0.94751 0.94183 1.05044 1.21954 0.91705 0.95633 0.92266 1.57317 1.32197 1.68971 1.24963 1.04320 0.72780 0.76556 0.74023 1.93418 1.83065 1.56145 1.66323 1.93449 1.70951 1.87693 1.45399 1.29968 1.04887 1.21211 1.12312 1.18341 0.90330 1.01175 0.88861 1.20704 1.12298 1.05548 1.20912 0.93453 1.25448 0.99070 0.93833 0.96277 1.70001 1.39063 1.14370 1.28329 0.86043 0.81111 0.78263 0.79542 1.20384 1.19323 1.18906 1.23198 1.02113 1.01157 0.96098 1.22452 1.00601 0.90285 1.04840 1.21345 1.01197 0.94637 0.83499 1.21486 0.97128 0.98164 1.02266 0.92894 0.92911 0.89390 0.92984 0.89963 0.89276 0.87951 0.89945 0.90614 0.86489 0.85753 0.92441 0.88205 0.90011 0.91665 0.89923 0.86365 0.90129 0.89173 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.70 113.37 1.21 1.60 16 2 O -0.42 -10.35 10.21 -148.98 -1.52 -11.88 16 3 C 0.10 2.18 2.08 28.61 0.06 2.24 16 4 H 0.08 1.28 6.96 -2.39 -0.02 1.27 16 5 C -0.15 -2.96 5.11 29.76 0.15 -2.81 16 6 C -0.12 -1.84 5.71 30.22 0.17 -1.67 16 7 C 0.11 2.49 5.90 86.49 0.51 3.00 16 8 N -1.00 -30.43 2.47 -512.39 -1.26 -31.69 16 9 S 2.63 113.88 4.47 -56.49 -0.25 113.62 16 10 O -1.00 -46.90 16.70 -127.65 -2.13 -49.03 16 11 O -0.98 -50.72 15.58 -127.65 -1.99 -52.71 16 12 C -0.55 -23.82 5.72 71.98 0.41 -23.41 16 13 C 0.01 0.74 1.64 -52.93 -0.09 0.65 16 14 C -0.56 -31.77 6.91 25.60 0.18 -31.60 16 15 H 0.05 2.81 7.82 -2.91 -0.02 2.79 16 16 C 0.06 3.35 5.39 84.65 0.46 3.80 16 17 N -0.88 -50.46 12.95 21.45 0.28 -50.18 16 18 Si 0.93 45.68 29.55 68.60 2.03 47.70 16 19 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.26 -12.70 7.11 99.48 0.71 -12.00 16 22 C -0.19 -8.16 9.88 30.59 0.30 -7.86 16 23 C -0.14 -6.62 9.49 30.59 0.29 -6.33 16 24 C 0.12 3.18 5.60 87.38 0.49 3.67 16 25 C -0.15 -4.07 5.30 29.40 0.16 -3.91 16 26 H 0.05 0.68 8.06 -2.39 -0.02 0.66 16 27 H 0.05 0.69 7.35 -2.39 -0.02 0.67 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 1.31 6.18 -2.38 -0.01 1.30 16 30 H 0.08 1.44 7.18 -2.39 -0.02 1.42 16 31 H 0.09 1.03 7.31 -2.39 -0.02 1.02 16 32 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.08 1.87 7.20 -2.39 -0.02 1.86 16 35 H 0.12 5.32 6.56 -2.39 -0.02 5.31 16 36 H 0.12 4.42 6.97 -2.39 -0.02 4.40 16 37 H 0.27 14.50 8.32 -92.71 -0.77 13.73 16 38 H 0.10 3.65 8.08 -2.39 -0.02 3.63 16 39 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 40 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 42 H 0.12 2.17 8.06 -2.38 -0.02 2.16 16 43 H 0.08 2.53 6.75 -2.39 -0.02 2.52 16 44 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.05 1.61 6.22 -2.39 -0.01 1.60 16 Total: -1.00 -73.47 358.69 0.42 -73.06 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.97 Total: 23.71 kcal Atomic # 6 Polarization: -66.90 SS G_CDS: 4.30 Total: -62.60 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -0.99 Total: -81.87 kcal Atomic # 8 Polarization: -107.98 SS G_CDS: -5.64 Total: -113.62 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: 113.88 SS G_CDS: -0.25 Total: 113.62 kcal Total: -73.47 0.42 -73.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594791777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.074 kcal (2) G-P(sol) polarization free energy of solvation -73.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds