Wall clock time and date at job start Tue Mar 31 2020 11:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99902 * 2 1 4 4 H 1.09000 * 110.21447 * 330.00176 * 3 2 1 5 5 C 1.50127 * 110.25170 * 91.93708 * 3 2 1 6 6 C 1.54964 * 110.74515 * 216.55975 * 5 3 2 7 7 C 1.54904 * 110.23539 * 321.34949 * 6 5 3 8 8 N 1.43425 * 116.08234 * 318.54923 * 7 6 5 9 9 S 1.65602 * 120.53946 * 271.54347 * 8 7 6 10 10 O 1.42099 * 104.27291 * 26.09376 * 9 8 7 11 11 O 1.42101 * 104.27713 * 153.95334 * 9 8 7 12 12 C 1.81398 * 104.44885 * 270.02268 * 9 8 7 13 13 C 1.53001 * 109.47048 * 173.78274 * 12 9 8 14 14 C 1.50698 * 115.55140 * 39.91881 * 13 12 9 15 15 H 1.07998 * 120.00517 * 264.81267 * 14 13 12 16 16 C 1.37882 * 119.99980 * 84.80588 * 14 13 12 17 17 N 1.31514 * 119.99688 * 353.28030 * 16 14 13 18 18 Si 1.86795 * 120.00167 * 173.26974 * 16 14 13 19 19 H 1.48497 * 109.47278 * 90.00197 * 18 16 14 20 20 H 1.48497 * 109.47528 * 210.00470 * 18 16 14 21 21 H 1.48507 * 109.46917 * 330.00441 * 18 16 14 22 22 C 1.53002 * 117.49932 * 254.21359 * 13 12 9 23 23 C 1.52999 * 117.50107 * 185.59086 * 13 12 9 24 24 C 1.50177 * 118.92572 * 91.56506 * 8 7 6 25 25 C 1.46231 * 107.53162 * 289.59213 * 24 8 7 26 26 H 1.09003 * 109.47257 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46973 * 299.99507 * 1 2 3 28 28 H 1.09000 * 109.47428 * 59.99924 * 1 2 3 29 29 H 1.08996 * 109.20495 * 337.14277 * 5 3 2 30 30 H 1.09003 * 109.20618 * 96.45377 * 5 3 2 31 31 H 1.09001 * 109.38681 * 201.07143 * 6 5 3 32 32 H 1.08992 * 109.23667 * 81.54143 * 6 5 3 33 33 H 1.09002 * 108.16116 * 196.82986 * 7 6 5 34 34 H 1.09004 * 107.99295 * 80.14741 * 7 6 5 35 35 H 1.09002 * 109.47007 * 293.78004 * 12 9 8 36 36 H 1.09002 * 109.47083 * 53.78311 * 12 9 8 37 37 H 0.97002 * 119.99234 * 185.03080 * 17 16 14 38 38 H 1.09000 * 117.49711 * 359.97438 * 22 13 12 39 39 H 1.08991 * 117.50102 * 145.01844 * 22 13 12 40 40 H 1.09001 * 117.50085 * 214.98196 * 23 13 12 41 41 H 1.09009 * 117.49564 * 359.97438 * 23 13 12 42 42 H 1.08997 * 109.84424 * 170.08022 * 24 8 7 43 43 H 1.09004 * 109.84188 * 49.09915 * 24 8 7 44 44 H 1.08999 * 108.52075 * 297.16509 * 25 24 8 45 45 H 1.09001 * 108.52494 * 179.65119 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3541 2.0098 -0.5114 5 6 2.2650 1.7608 1.4077 6 6 2.0018 3.2814 1.5488 7 6 2.4980 4.0304 0.2870 8 7 3.7553 3.5970 -0.2500 9 16 5.1739 4.2595 0.2893 10 8 4.8765 4.6991 1.6074 11 8 6.1442 3.2478 0.0558 12 6 5.4566 5.6774 -0.8062 13 6 6.6670 6.4713 -0.3108 14 6 7.8248 5.6465 0.1895 15 1 7.9220 5.4360 1.2443 16 6 8.7600 5.1604 -0.6994 17 7 8.5732 5.3024 -1.9935 18 14 10.2925 4.3006 -0.0658 19 1 10.0255 2.8457 0.0648 20 1 11.4105 4.5150 -1.0193 21 1 10.6597 4.8576 1.2610 22 6 6.3991 7.8080 0.3839 23 6 6.9920 7.7840 -1.0263 24 6 3.7644 2.5329 -1.3097 25 6 3.3784 1.2742 -0.6734 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.6091 1.2146 2.0855 30 1 3.3027 1.5535 1.6693 31 1 2.5290 3.6601 2.4245 32 1 0.9322 3.4507 1.6724 33 1 2.5798 5.0897 0.5309 34 1 1.7408 3.9205 -0.4894 35 1 5.6451 5.3220 -1.8192 36 1 4.5756 6.3193 -0.8043 37 1 9.1929 4.8974 -2.6202 38 1 5.3604 8.1219 0.4875 39 1 7.0601 8.0909 1.2030 40 1 8.0431 8.0512 -1.1350 41 1 6.3436 8.0819 -1.8504 42 1 4.7643 2.4418 -1.7340 43 1 3.0504 2.7854 -2.0938 44 1 4.1278 1.0214 0.0767 45 1 3.3738 0.4903 -1.4308 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594791778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:28 Heat of formation + Delta-G solvation = -89.305769 kcal Electronic energy + Delta-G solvation = -26750.399859 eV Core-core repulsion = 23089.218407 eV Total energy + Delta-G solvation = -3661.181452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.52182 -36.89758 -36.70412 -36.15497 -34.84930 -32.64217 -32.30761 -32.03834 -28.15947 -27.11244 -25.92874 -25.39645 -24.52578 -21.57174 -21.19966 -20.35454 -19.46709 -18.02252 -17.26827 -16.51610 -16.24022 -16.14777 -15.29703 -15.14264 -14.97437 -14.66409 -14.47470 -14.22789 -13.82258 -13.68067 -13.14880 -12.93827 -12.88880 -12.41699 -12.17539 -12.05282 -11.79136 -11.70976 -11.33537 -11.08514 -11.01482 -10.97593 -10.96682 -10.85381 -10.80598 -10.56374 -10.51134 -10.35002 -10.17643 -10.07543 -9.70970 -9.59236 -8.98895 -8.74320 -8.52538 -8.09135 -6.15476 -4.30030 1.17175 3.33676 3.41127 3.43974 3.45375 3.63466 4.40746 4.62715 4.73027 4.79726 4.93029 5.00190 5.12308 5.14660 5.15086 5.16521 5.20695 5.27516 5.31022 5.38987 5.46794 5.60992 5.72606 5.73176 5.75118 5.82200 5.93737 5.99463 6.11438 6.24213 6.28446 6.32898 6.33554 6.36096 6.45006 6.62399 6.69876 6.93986 6.99984 7.16017 7.19121 7.39423 7.79194 8.19323 8.78644 9.47147 10.92157 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.004557 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.205452 B = 6143.117696 C = 6771.011718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.093 3.907 4 H 0.069 0.931 5 C -0.142 4.142 6 C -0.140 4.140 7 C 0.127 3.873 8 N -1.012 6.012 9 S 2.622 3.378 10 O -0.970 6.970 11 O -0.939 6.939 12 C -0.561 4.561 13 C 0.051 3.949 14 C -0.543 4.543 15 H 0.068 0.932 16 C 0.098 3.902 17 N -0.867 5.867 18 Si 0.889 3.111 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.270 1.270 22 C -0.205 4.205 23 C -0.145 4.145 24 C 0.131 3.869 25 C -0.141 4.141 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.265 0.735 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.116 -4.937 -0.275 16.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C 0.036 3.964 4 H 0.087 0.913 5 C -0.180 4.180 6 C -0.179 4.179 7 C 0.000 4.000 8 N -0.847 5.847 9 S 2.720 3.280 10 O -0.960 6.960 11 O -0.929 6.929 12 C -0.693 4.693 13 C 0.049 3.951 14 C -0.580 4.580 15 H 0.086 0.914 16 C -0.109 4.109 17 N -0.501 5.501 18 Si 0.715 3.285 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.242 4.242 23 C -0.184 4.184 24 C 0.007 3.993 25 C -0.180 4.180 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.144 0.856 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.121 0.879 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.403 -5.438 0.247 16.336 hybrid contribution 0.311 0.197 -0.367 0.520 sum -15.091 -5.241 -0.120 15.976 Atomic orbital electron populations 1.22735 0.81518 1.02367 0.99822 1.87917 1.19248 1.28209 1.95104 1.21434 0.94787 0.83936 0.96257 0.91323 1.22108 1.03063 0.95932 0.96855 1.22707 1.00798 0.94750 0.99682 1.20612 0.86324 0.97761 0.95351 1.58372 1.22064 1.52027 1.52285 1.04822 0.71488 0.76323 0.75412 1.93467 1.83658 1.83900 1.35017 1.93524 1.58005 1.55466 1.85943 1.30024 1.05489 1.17765 1.16018 1.18176 0.91773 0.86014 0.99170 1.20584 1.08092 1.35048 0.94290 0.91356 1.24886 0.97612 0.93813 0.94594 1.69955 1.37220 1.41806 1.01169 0.86611 0.82004 0.80824 0.79032 1.19539 1.20973 1.19420 1.23121 0.99340 1.05071 0.96646 1.22531 1.00011 1.03463 0.92351 1.20710 1.03582 0.85737 0.89263 1.20884 0.96064 0.98881 1.02129 0.89940 0.94184 0.94213 0.91772 0.91025 0.90235 0.91292 0.91355 0.91725 0.85564 0.88802 0.92560 0.91315 0.89699 0.89635 0.91655 0.87920 0.91046 0.90270 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.85 101.05 1.10 1.37 16 2 O -0.39 -4.72 10.24 -35.23 -0.36 -5.09 16 3 C 0.09 1.12 2.35 -28.40 -0.07 1.05 16 4 H 0.07 0.72 5.97 -51.93 -0.31 0.41 16 5 C -0.14 -1.83 5.43 -27.12 -0.15 -1.98 16 6 C -0.14 -1.73 6.39 -24.69 -0.16 -1.89 16 7 C 0.13 1.65 4.66 -4.66 -0.02 1.62 16 8 N -1.01 -15.78 2.82 -116.10 -0.33 -16.11 16 9 S 2.62 55.12 4.53 -107.50 -0.49 54.63 16 10 O -0.97 -22.14 17.01 -57.54 -0.98 -23.12 16 11 O -0.94 -23.05 15.96 -57.54 -0.92 -23.96 16 12 C -0.56 -11.79 6.29 37.16 0.23 -11.56 16 13 C 0.05 1.24 1.64 -155.66 -0.26 0.99 16 14 C -0.54 -14.96 6.89 -34.44 -0.24 -15.20 16 15 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 16 C 0.10 2.71 5.39 -17.82 -0.10 2.61 16 17 N -0.87 -23.96 12.95 55.43 0.72 -23.25 16 18 Si 0.89 21.84 29.55 -169.99 -5.02 16.82 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 22 C -0.20 -4.46 9.88 -26.73 -0.26 -4.72 16 23 C -0.14 -3.30 9.49 -26.73 -0.25 -3.56 16 24 C 0.13 1.77 5.86 -5.20 -0.03 1.74 16 25 C -0.14 -1.87 4.94 -30.19 -0.15 -2.01 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.04 0.30 8.10 -51.93 -0.42 -0.13 16 29 H 0.06 0.76 7.98 -51.93 -0.41 0.34 16 30 H 0.07 1.08 6.83 -51.93 -0.35 0.73 16 31 H 0.08 1.13 8.03 -51.93 -0.42 0.72 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.87 7.81 -51.93 -0.41 0.46 16 34 H 0.06 0.65 6.88 -51.93 -0.36 0.29 16 35 H 0.13 2.68 8.14 -51.92 -0.42 2.26 16 36 H 0.09 1.65 7.95 -51.92 -0.41 1.23 16 37 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 38 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 39 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 40 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 41 H 0.06 1.37 8.14 -51.92 -0.42 0.94 16 42 H 0.10 1.51 7.27 -51.93 -0.38 1.13 16 43 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 44 H 0.08 1.21 6.94 -51.93 -0.36 0.85 16 45 H 0.08 0.93 8.05 -51.93 -0.42 0.52 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -32.58 365.59 -9.81 -42.40 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.59 Total: 3.70 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: -0.35 Total: -31.54 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.39 Total: -39.35 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -2.26 Total: -52.17 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 55.12 SS G_CDS: -0.49 Total: 54.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.58 -9.81 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594791778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.910 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds