Wall clock time and date at job start Tue Mar 31 2020 11:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99902 * 2 1 4 4 H 1.09000 * 110.21447 * 330.00176 * 3 2 1 5 5 C 1.50127 * 110.25170 * 91.93708 * 3 2 1 6 6 C 1.54964 * 110.74515 * 216.55975 * 5 3 2 7 7 C 1.54904 * 110.23539 * 321.34949 * 6 5 3 8 8 N 1.43425 * 116.08234 * 318.54923 * 7 6 5 9 9 S 1.65602 * 120.53946 * 271.54347 * 8 7 6 10 10 O 1.42099 * 104.27291 * 26.09376 * 9 8 7 11 11 O 1.42101 * 104.27713 * 153.95334 * 9 8 7 12 12 C 1.81398 * 104.44885 * 270.02268 * 9 8 7 13 13 C 1.53001 * 109.47048 * 173.78274 * 12 9 8 14 14 C 1.50698 * 115.55140 * 39.91881 * 13 12 9 15 15 H 1.07998 * 120.00517 * 264.81267 * 14 13 12 16 16 C 1.37882 * 119.99980 * 84.80588 * 14 13 12 17 17 N 1.31514 * 119.99688 * 353.28030 * 16 14 13 18 18 Si 1.86795 * 120.00167 * 173.26974 * 16 14 13 19 19 H 1.48497 * 109.47278 * 90.00197 * 18 16 14 20 20 H 1.48497 * 109.47528 * 210.00470 * 18 16 14 21 21 H 1.48507 * 109.46917 * 330.00441 * 18 16 14 22 22 C 1.53002 * 117.49932 * 254.21359 * 13 12 9 23 23 C 1.52999 * 117.50107 * 185.59086 * 13 12 9 24 24 C 1.50177 * 118.92572 * 91.56506 * 8 7 6 25 25 C 1.46231 * 107.53162 * 289.59213 * 24 8 7 26 26 H 1.09003 * 109.47257 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46973 * 299.99507 * 1 2 3 28 28 H 1.09000 * 109.47428 * 59.99924 * 1 2 3 29 29 H 1.08996 * 109.20495 * 337.14277 * 5 3 2 30 30 H 1.09003 * 109.20618 * 96.45377 * 5 3 2 31 31 H 1.09001 * 109.38681 * 201.07143 * 6 5 3 32 32 H 1.08992 * 109.23667 * 81.54143 * 6 5 3 33 33 H 1.09002 * 108.16116 * 196.82986 * 7 6 5 34 34 H 1.09004 * 107.99295 * 80.14741 * 7 6 5 35 35 H 1.09002 * 109.47007 * 293.78004 * 12 9 8 36 36 H 1.09002 * 109.47083 * 53.78311 * 12 9 8 37 37 H 0.97002 * 119.99234 * 185.03080 * 17 16 14 38 38 H 1.09000 * 117.49711 * 359.97438 * 22 13 12 39 39 H 1.08991 * 117.50102 * 145.01844 * 22 13 12 40 40 H 1.09001 * 117.50085 * 214.98196 * 23 13 12 41 41 H 1.09009 * 117.49564 * 359.97438 * 23 13 12 42 42 H 1.08997 * 109.84424 * 170.08022 * 24 8 7 43 43 H 1.09004 * 109.84188 * 49.09915 * 24 8 7 44 44 H 1.08999 * 108.52075 * 297.16509 * 25 24 8 45 45 H 1.09001 * 108.52494 * 179.65119 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3541 2.0098 -0.5114 5 6 2.2650 1.7608 1.4077 6 6 2.0018 3.2814 1.5488 7 6 2.4980 4.0304 0.2870 8 7 3.7553 3.5970 -0.2500 9 16 5.1739 4.2595 0.2893 10 8 4.8765 4.6991 1.6074 11 8 6.1442 3.2478 0.0558 12 6 5.4566 5.6774 -0.8062 13 6 6.6670 6.4713 -0.3108 14 6 7.8248 5.6465 0.1895 15 1 7.9220 5.4360 1.2443 16 6 8.7600 5.1604 -0.6994 17 7 8.5732 5.3024 -1.9935 18 14 10.2925 4.3006 -0.0658 19 1 10.0255 2.8457 0.0648 20 1 11.4105 4.5150 -1.0193 21 1 10.6597 4.8576 1.2610 22 6 6.3991 7.8080 0.3839 23 6 6.9920 7.7840 -1.0263 24 6 3.7644 2.5329 -1.3097 25 6 3.3784 1.2742 -0.6734 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.6091 1.2146 2.0855 30 1 3.3027 1.5535 1.6693 31 1 2.5290 3.6601 2.4245 32 1 0.9322 3.4507 1.6724 33 1 2.5798 5.0897 0.5309 34 1 1.7408 3.9205 -0.4894 35 1 5.6451 5.3220 -1.8192 36 1 4.5756 6.3193 -0.8043 37 1 9.1929 4.8974 -2.6202 38 1 5.3604 8.1219 0.4875 39 1 7.0601 8.0909 1.2030 40 1 8.0431 8.0512 -1.1350 41 1 6.3436 8.0819 -1.8504 42 1 4.7643 2.4418 -1.7340 43 1 3.0504 2.7854 -2.0938 44 1 4.1278 1.0214 0.0767 45 1 3.3738 0.4903 -1.4308 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594791778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:27 Heat of formation + Delta-G solvation = -111.565996 kcal Electronic energy + Delta-G solvation = -26751.365135 eV Core-core repulsion = 23089.218407 eV Total energy + Delta-G solvation = -3662.146728 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.49711 -38.53569 -37.91613 -37.80695 -36.58920 -34.11387 -33.68398 -33.34566 -29.84772 -27.90989 -27.51746 -26.86520 -25.46381 -22.96879 -22.70020 -21.50392 -21.18043 -19.51558 -18.52123 -18.31140 -17.42561 -17.32615 -16.91241 -16.53832 -16.18181 -16.12802 -15.64798 -15.52595 -15.39199 -14.88471 -14.75043 -14.11995 -13.95397 -13.87325 -13.72673 -13.30933 -13.14539 -13.04864 -12.91604 -12.78356 -12.77154 -12.68231 -12.43325 -12.24199 -12.11627 -12.04082 -11.85530 -11.76045 -11.60435 -11.52709 -11.20639 -10.87008 -10.52918 -10.46126 -10.10431 -9.77299 -8.24171 -6.41228 -0.42680 1.33611 1.39991 1.44379 2.07228 2.38324 2.81536 3.06071 3.17122 3.32215 3.49943 3.64408 3.78362 3.94501 4.04632 4.13784 4.22463 4.31265 4.32622 4.35646 4.57159 4.59074 4.60256 4.62992 4.69855 4.74376 4.78338 4.82064 4.85883 4.90577 4.92812 4.97923 5.13467 5.19183 5.22002 5.24735 5.31434 5.38360 5.41073 5.60692 5.67707 5.85572 6.20337 6.36379 6.67512 7.36309 8.82916 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.004557 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.205452 B = 6143.117696 C = 6771.011718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.101 3.899 4 H 0.097 0.903 5 C -0.142 4.142 6 C -0.139 4.139 7 C 0.110 3.890 8 N -1.003 6.003 9 S 2.628 3.372 10 O -0.998 6.998 11 O -0.989 6.989 12 C -0.554 4.554 13 C 0.013 3.987 14 C -0.558 4.558 15 H 0.044 0.956 16 C 0.062 3.938 17 N -0.882 5.882 18 Si 0.922 3.078 19 H -0.280 1.280 20 H -0.267 1.267 21 H -0.267 1.267 22 C -0.190 4.190 23 C -0.141 4.141 24 C 0.127 3.873 25 C -0.141 4.141 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.133 0.867 37 H 0.267 0.733 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.043 0.957 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.169 -4.364 -1.445 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.044 3.956 4 H 0.115 0.885 5 C -0.180 4.180 6 C -0.178 4.178 7 C -0.017 4.017 8 N -0.841 5.841 9 S 2.726 3.274 10 O -0.988 6.988 11 O -0.979 6.979 12 C -0.687 4.687 13 C 0.011 3.989 14 C -0.595 4.595 15 H 0.062 0.938 16 C -0.144 4.144 17 N -0.517 5.517 18 Si 0.747 3.253 19 H -0.206 1.206 20 H -0.191 1.191 21 H -0.191 1.191 22 C -0.227 4.227 23 C -0.180 4.180 24 C 0.004 3.996 25 C -0.180 4.180 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.140 0.860 36 H 0.152 0.848 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.135 0.865 44 H 0.062 0.938 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.444 -4.858 -0.911 19.094 hybrid contribution 1.171 -0.033 0.039 1.172 sum -17.273 -4.891 -0.872 17.973 Atomic orbital electron populations 1.22971 0.79522 1.03636 1.01040 1.87894 1.21483 1.28288 1.95180 1.21348 0.94363 0.84634 0.95267 0.88505 1.22097 1.01024 0.96772 0.98117 1.22738 1.02740 0.93869 0.98481 1.21024 0.85749 0.98013 0.96871 1.57908 1.21385 1.51973 1.52841 1.04281 0.72048 0.75994 0.75073 1.93419 1.84240 1.84297 1.36838 1.93456 1.60851 1.57048 1.86502 1.29886 1.05650 1.17934 1.15214 1.18329 0.92397 0.86872 1.01273 1.20716 1.09792 1.35743 0.93252 0.93751 1.25385 0.99438 0.94540 0.95002 1.69975 1.37870 1.42477 1.01414 0.86097 0.80546 0.79391 0.79231 1.20626 1.19115 1.19134 1.23203 1.01039 1.02710 0.95790 1.22477 0.99407 1.02358 0.93774 1.20941 1.03905 0.85130 0.89585 1.20865 0.96347 0.99179 1.01627 0.88851 0.93320 0.92520 0.90891 0.94686 0.93014 0.87488 0.90901 0.87223 0.85969 0.84830 0.92364 0.87962 0.90336 0.91807 0.89383 0.89907 0.86478 0.93791 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.85 113.37 1.23 1.57 16 2 O -0.41 -9.08 10.24 -148.98 -1.53 -10.61 16 3 C 0.10 2.18 2.35 29.51 0.07 2.25 16 4 H 0.10 1.54 5.97 -2.39 -0.01 1.53 16 5 C -0.14 -3.52 5.43 30.34 0.16 -3.36 16 6 C -0.14 -3.14 6.39 31.92 0.20 -2.93 16 7 C 0.11 2.48 4.66 87.60 0.41 2.89 16 8 N -1.00 -29.77 2.82 -521.24 -1.47 -31.24 16 9 S 2.63 111.38 4.53 -56.49 -0.26 111.12 16 10 O -1.00 -46.29 17.01 -127.65 -2.17 -48.46 16 11 O -0.99 -50.69 15.96 -127.65 -2.04 -52.73 16 12 C -0.55 -22.60 6.29 71.98 0.45 -22.15 16 13 C 0.01 0.64 1.64 -52.93 -0.09 0.56 16 14 C -0.56 -31.46 6.89 25.60 0.18 -31.28 16 15 H 0.04 2.63 7.82 -2.91 -0.02 2.61 16 16 C 0.06 3.46 5.39 84.66 0.46 3.91 16 17 N -0.88 -49.25 12.95 21.45 0.28 -48.97 16 18 Si 0.92 45.46 29.55 68.60 2.03 47.49 16 19 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 21 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 22 C -0.19 -8.00 9.88 30.59 0.30 -7.70 16 23 C -0.14 -6.29 9.49 30.59 0.29 -6.00 16 24 C 0.13 3.22 5.86 83.58 0.49 3.71 16 25 C -0.14 -3.62 4.94 28.35 0.14 -3.48 16 26 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.06 0.60 8.10 -2.39 -0.02 0.58 16 29 H 0.07 1.63 7.98 -2.39 -0.02 1.61 16 30 H 0.03 1.10 6.83 -2.39 -0.02 1.09 16 31 H 0.05 1.45 8.03 -2.39 -0.02 1.43 16 32 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.61 7.81 -2.39 -0.02 1.59 16 34 H 0.11 1.55 6.88 -2.38 -0.02 1.54 16 35 H 0.12 5.07 8.14 -2.39 -0.02 5.05 16 36 H 0.13 4.24 7.95 -2.39 -0.02 4.22 16 37 H 0.27 14.18 8.32 -92.71 -0.77 13.41 16 38 H 0.10 3.58 8.08 -2.39 -0.02 3.56 16 39 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16 42 H 0.08 2.44 7.27 -2.39 -0.02 2.42 16 43 H 0.12 1.93 8.12 -2.38 -0.02 1.91 16 44 H 0.04 1.42 6.94 -2.39 -0.02 1.40 16 45 H 0.09 2.07 8.05 -2.39 -0.02 2.05 16 Total: -1.00 -73.69 365.59 0.10 -73.59 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.96 Total: 21.82 kcal Atomic # 6 Polarization: -66.31 SS G_CDS: 4.30 Total: -62.02 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -1.19 Total: -80.21 kcal Atomic # 8 Polarization: -106.06 SS G_CDS: -5.73 Total: -111.79 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 111.38 SS G_CDS: -0.26 Total: 111.12 kcal Total: -73.69 0.10 -73.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594791778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.977 kcal (2) G-P(sol) polarization free energy of solvation -73.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds