Wall clock time and date at job start Tue Mar 31 2020 11:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34947 * 126.03370 * 2 1 4 4 C 1.35321 * 107.74270 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.03897 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47129 * 269.99711 * 5 4 3 7 7 H 1.08997 * 110.53877 * 302.94680 * 6 5 4 8 8 C 1.54229 * 110.60660 * 179.97438 * 6 5 4 9 9 C 1.51308 * 103.55412 * 241.48249 * 8 6 5 10 10 O 1.21235 * 125.39766 * 179.97438 * 9 8 6 11 11 N 1.33876 * 109.21250 * 0.02562 * 9 8 6 12 12 C 1.46497 * 122.76987 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46622 * 268.84869 * 12 11 9 14 14 C 1.50704 * 115.54564 * 185.41847 * 13 12 11 15 15 H 1.08001 * 119.99928 * 115.90296 * 14 13 12 16 16 C 1.37877 * 120.00173 * 295.90490 * 14 13 12 17 17 N 1.31513 * 119.99989 * 174.43969 * 16 14 13 18 18 Si 1.86803 * 119.99779 * 354.43789 * 16 14 13 19 19 H 1.48506 * 109.46952 * 85.90185 * 18 16 14 20 20 H 1.48504 * 109.46912 * 205.89444 * 18 16 14 21 21 H 1.48490 * 109.47402 * 325.90130 * 18 16 14 22 22 C 1.52993 * 117.50032 * 39.75164 * 13 12 11 23 23 C 1.53001 * 117.50170 * 331.08984 * 13 12 11 24 24 C 1.33881 * 114.47179 * 359.97438 * 11 9 8 25 25 O 1.21220 * 125.39877 * 179.97438 * 24 11 9 26 26 C 1.39870 * 107.91990 * 359.97438 * 4 3 2 27 27 N 1.30842 * 108.20559 * 0.02562 * 26 4 3 28 28 H 1.09003 * 109.47288 * 270.02655 * 1 2 3 29 29 H 1.09005 * 109.47287 * 30.02957 * 1 2 3 30 30 H 1.09000 * 109.47259 * 150.02496 * 1 2 3 31 31 H 1.07997 * 126.13353 * 0.03987 * 3 2 1 32 32 H 1.08997 * 109.47153 * 29.99658 * 5 4 3 33 33 H 1.08997 * 109.47153 * 150.00192 * 5 4 3 34 34 H 1.08992 * 110.60482 * 0.02562 * 8 6 5 35 35 H 1.09002 * 110.60213 * 122.96801 * 8 6 5 36 36 H 1.08996 * 109.46848 * 28.84426 * 12 11 9 37 37 H 1.08999 * 109.47533 * 148.85136 * 12 11 9 38 38 H 0.97001 * 119.99664 * 179.97438 * 17 16 14 39 39 H 1.08996 * 117.50394 * 359.97438 * 22 13 12 40 40 H 1.09004 * 117.50165 * 145.01886 * 22 13 12 41 41 H 1.09003 * 117.49476 * 214.98541 * 23 13 12 42 42 H 1.08998 * 117.49384 * 359.97416 * 23 13 12 43 43 H 1.07996 * 125.89901 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7679 1.5453 -0.0013 6 6 5.1816 1.8424 -1.4441 7 1 5.3592 0.9156 -1.9896 8 6 6.4339 2.7421 -1.4755 9 6 5.9561 3.9903 -2.1848 10 8 6.6349 4.9662 -2.4226 11 7 4.6648 3.8468 -2.5073 12 6 3.9022 4.8837 -3.2070 13 6 3.2330 5.8028 -2.1831 14 6 2.3071 6.8461 -2.7537 15 1 1.2532 6.8190 -2.5193 16 6 2.8055 7.8352 -3.5749 17 7 1.9845 8.6794 -4.1603 18 14 4.6469 7.9760 -3.8558 19 1 5.0484 7.0757 -4.9665 20 1 4.9882 9.3779 -4.2071 21 1 5.3678 7.5863 -2.6175 22 6 4.0387 6.1783 -0.9379 23 6 2.8669 5.1999 -0.8254 24 6 4.1278 2.6771 -2.1387 25 8 2.9792 2.3403 -2.3304 26 6 3.5346 -0.7321 -0.0003 27 7 2.2891 -1.1328 -0.0002 28 1 -0.3634 0.0005 1.0277 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5134 31 1 1.9281 2.1194 0.0006 32 1 4.5444 2.4803 0.5124 33 1 5.5823 1.0343 0.5121 34 1 6.7624 2.9776 -0.4633 35 1 7.2356 2.2640 -2.0383 36 1 4.5749 5.4680 -3.8348 37 1 3.1390 4.4161 -3.8290 38 1 2.3352 9.3755 -4.7377 39 1 5.0454 5.7703 -0.8478 40 1 3.8989 7.1799 -0.5311 41 1 1.9565 5.5581 -0.3447 42 1 3.1025 4.1483 -0.6618 43 1 4.4053 -1.3710 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596261152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:15 Heat of formation + Delta-G solvation = 49.465512 kcal Electronic energy + Delta-G solvation = -27763.533194 eV Core-core repulsion = 24005.218116 eV Total energy + Delta-G solvation = -3758.315078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.96098 -41.04494 -38.27409 -36.98234 -35.69366 -34.37174 -32.94424 -32.17593 -30.77729 -28.32278 -27.23694 -26.11073 -25.31254 -24.09571 -22.02386 -21.27472 -21.08023 -20.43653 -19.62114 -18.67727 -17.21960 -16.85288 -16.61582 -16.20084 -16.04431 -15.41194 -14.84333 -14.59406 -14.44997 -14.22896 -14.03917 -13.74767 -13.48752 -13.17115 -13.04993 -12.89756 -12.75799 -12.58789 -12.50948 -12.15087 -11.98139 -11.96636 -11.37407 -11.00415 -10.77188 -10.58520 -10.54914 -10.43097 -10.23376 -9.76808 -9.66333 -9.36577 -9.16873 -9.13103 -8.62482 -8.45063 -8.32545 -6.17869 -4.21006 1.76687 1.96454 2.54481 2.75733 2.88092 3.04898 3.28587 3.40657 3.58491 4.12002 4.34246 4.37437 4.39790 4.56500 4.77686 4.81505 4.91154 5.06363 5.08186 5.18057 5.20178 5.24962 5.32813 5.40916 5.52473 5.58725 5.69809 5.74250 5.79480 5.88619 5.90730 6.03532 6.15978 6.24280 6.34024 6.44980 6.64808 6.76016 7.00972 7.02363 7.10004 7.25921 7.62880 7.63890 7.70603 8.10564 8.42979 8.84336 9.44073 10.92772 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017687 B = 0.004708 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.687011 B = 5946.427777 C = 7020.194716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.375 5.375 3 C 0.099 3.901 4 C -0.251 4.251 5 C -0.020 4.020 6 C -0.123 4.123 7 H 0.120 0.880 8 C -0.157 4.157 9 C 0.519 3.481 10 O -0.480 6.480 11 N -0.568 5.568 12 C 0.123 3.877 13 C -0.005 4.005 14 C -0.485 4.485 15 H 0.080 0.920 16 C 0.081 3.919 17 N -0.892 5.892 18 Si 0.865 3.135 19 H -0.278 1.278 20 H -0.292 1.292 21 H -0.241 1.241 22 C -0.192 4.192 23 C -0.179 4.179 24 C 0.528 3.472 25 O -0.469 6.469 26 C 0.054 3.946 27 N -0.307 5.307 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.267 0.733 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 -17.703 9.035 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.156 5.156 3 C -0.048 4.048 4 C -0.263 4.263 5 C -0.058 4.058 6 C -0.144 4.144 7 H 0.138 0.862 8 C -0.196 4.196 9 C 0.308 3.692 10 O -0.352 6.352 11 N -0.310 5.310 12 C 0.004 3.996 13 C -0.007 4.007 14 C -0.523 4.523 15 H 0.098 0.902 16 C -0.122 4.122 17 N -0.528 5.528 18 Si 0.693 3.307 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.165 1.165 22 C -0.230 4.230 23 C -0.216 4.216 24 C 0.316 3.684 25 O -0.339 6.339 26 C -0.132 4.132 27 N -0.128 5.128 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.188 0.812 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.547 -18.171 8.650 20.632 hybrid contribution 1.380 1.065 -0.445 1.799 sum 5.927 -17.107 8.205 19.877 Atomic orbital electron populations 1.21853 0.74329 1.04698 1.03074 1.48374 1.06584 1.03828 1.56861 1.22362 0.90789 0.93280 0.98342 1.19755 0.94107 0.93734 1.18681 1.19731 0.94875 0.98858 0.92376 1.22168 0.93129 0.99747 0.99382 0.86234 1.22605 0.98980 0.93980 1.04082 1.20755 0.81519 0.88890 0.78047 1.90791 1.59069 1.33168 1.52186 1.47010 1.12987 1.18413 1.52618 1.21989 0.94712 0.87344 0.95592 1.19637 0.98169 0.96918 0.85983 1.20211 0.94704 1.07964 1.29390 0.90220 1.24957 0.97847 0.95086 0.94351 1.69891 1.34986 1.17985 1.29927 0.87086 0.86207 0.76875 0.80578 1.20472 1.21855 1.16452 1.23096 0.93784 0.99309 1.06788 1.22773 0.99367 0.95967 1.03472 1.20589 0.88711 0.81380 0.77709 1.90735 1.17405 1.73555 1.52251 1.23671 0.95172 0.94308 1.00055 1.77280 1.01657 1.08614 1.25284 0.90960 0.89182 0.89505 0.81244 0.90708 0.89406 0.86310 0.86530 0.89853 0.88720 0.92343 0.91440 0.89533 0.89746 0.91581 0.80371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.91 11.47 59.85 0.69 1.59 16 2 N -0.38 -4.70 4.01 -68.16 -0.27 -4.97 16 3 C 0.10 1.26 9.41 -17.22 -0.16 1.10 16 4 C -0.25 -2.84 4.82 -105.05 -0.51 -3.35 16 5 C -0.02 -0.18 5.04 -27.88 -0.14 -0.32 16 6 C -0.12 -1.23 3.13 -90.82 -0.28 -1.52 16 7 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 8 C -0.16 -1.49 6.67 -26.94 -0.18 -1.67 16 9 C 0.52 8.20 6.49 -11.09 -0.07 8.13 16 10 O -0.48 -9.42 16.72 5.60 0.09 -9.32 16 11 N -0.57 -9.75 1.84 -115.34 -0.21 -9.97 16 12 C 0.12 2.63 5.30 -4.04 -0.02 2.60 16 13 C -0.01 -0.12 1.38 -155.66 -0.22 -0.34 16 14 C -0.49 -13.35 9.40 -34.44 -0.32 -13.67 16 15 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 16 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 17 N -0.89 -26.78 13.96 55.43 0.77 -26.00 16 18 Si 0.87 21.89 25.01 -169.99 -4.25 17.63 16 19 H -0.28 -6.93 6.74 56.52 0.38 -6.55 16 20 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 21 H -0.24 -6.04 5.99 56.52 0.34 -5.70 16 22 C -0.19 -4.11 7.96 -26.70 -0.21 -4.32 16 23 C -0.18 -3.56 9.55 -26.69 -0.25 -3.82 16 24 C 0.53 7.94 5.29 -11.08 -0.06 7.88 16 25 O -0.47 -8.23 14.53 5.61 0.08 -8.15 16 26 C 0.05 0.60 11.96 -17.36 -0.21 0.39 16 27 N -0.31 -4.08 12.58 30.62 0.39 -3.70 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.17 2.17 7.90 -52.49 -0.41 1.75 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.12 0.90 7.74 -51.93 -0.40 0.49 16 35 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.91 4.42 -51.93 -0.23 1.68 16 37 H 0.09 2.04 7.86 -51.93 -0.41 1.63 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.07 1.38 5.59 -51.93 -0.29 1.09 16 40 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 41 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 42 H 0.07 1.17 5.50 -51.93 -0.29 0.88 16 43 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -34.99 348.53 -6.10 -41.09 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.90 Total: 3.23 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.05 Total: -5.09 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.67 Total: -44.64 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.18 Total: -17.47 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.25 Total: 17.63 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.99 -6.10 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596261152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.558 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds