Wall clock time and date at job start Tue Mar 31 2020 11:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34947 * 126.03370 * 2 1 4 4 C 1.35321 * 107.74270 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.03897 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47129 * 269.99711 * 5 4 3 7 7 H 1.08997 * 110.53877 * 302.94680 * 6 5 4 8 8 C 1.54229 * 110.60660 * 179.97438 * 6 5 4 9 9 C 1.51308 * 103.55412 * 241.48249 * 8 6 5 10 10 O 1.21235 * 125.39766 * 179.97438 * 9 8 6 11 11 N 1.33876 * 109.21250 * 0.02562 * 9 8 6 12 12 C 1.46497 * 122.76987 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46622 * 268.84869 * 12 11 9 14 14 C 1.50704 * 115.54564 * 185.41847 * 13 12 11 15 15 H 1.08001 * 119.99928 * 115.90296 * 14 13 12 16 16 C 1.37877 * 120.00173 * 295.90490 * 14 13 12 17 17 N 1.31513 * 119.99989 * 174.43969 * 16 14 13 18 18 Si 1.86803 * 119.99779 * 354.43789 * 16 14 13 19 19 H 1.48506 * 109.46952 * 85.90185 * 18 16 14 20 20 H 1.48504 * 109.46912 * 205.89444 * 18 16 14 21 21 H 1.48490 * 109.47402 * 325.90130 * 18 16 14 22 22 C 1.52993 * 117.50032 * 39.75164 * 13 12 11 23 23 C 1.53001 * 117.50170 * 331.08984 * 13 12 11 24 24 C 1.33881 * 114.47179 * 359.97438 * 11 9 8 25 25 O 1.21220 * 125.39877 * 179.97438 * 24 11 9 26 26 C 1.39870 * 107.91990 * 359.97438 * 4 3 2 27 27 N 1.30842 * 108.20559 * 0.02562 * 26 4 3 28 28 H 1.09003 * 109.47288 * 270.02655 * 1 2 3 29 29 H 1.09005 * 109.47287 * 30.02957 * 1 2 3 30 30 H 1.09000 * 109.47259 * 150.02496 * 1 2 3 31 31 H 1.07997 * 126.13353 * 0.03987 * 3 2 1 32 32 H 1.08997 * 109.47153 * 29.99658 * 5 4 3 33 33 H 1.08997 * 109.47153 * 150.00192 * 5 4 3 34 34 H 1.08992 * 110.60482 * 0.02562 * 8 6 5 35 35 H 1.09002 * 110.60213 * 122.96801 * 8 6 5 36 36 H 1.08996 * 109.46848 * 28.84426 * 12 11 9 37 37 H 1.08999 * 109.47533 * 148.85136 * 12 11 9 38 38 H 0.97001 * 119.99664 * 179.97438 * 17 16 14 39 39 H 1.08996 * 117.50394 * 359.97438 * 22 13 12 40 40 H 1.09004 * 117.50165 * 145.01886 * 22 13 12 41 41 H 1.09003 * 117.49476 * 214.98541 * 23 13 12 42 42 H 1.08998 * 117.49384 * 359.97416 * 23 13 12 43 43 H 1.07996 * 125.89901 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7679 1.5453 -0.0013 6 6 5.1816 1.8424 -1.4441 7 1 5.3592 0.9156 -1.9896 8 6 6.4339 2.7421 -1.4755 9 6 5.9561 3.9903 -2.1848 10 8 6.6349 4.9662 -2.4226 11 7 4.6648 3.8468 -2.5073 12 6 3.9022 4.8837 -3.2070 13 6 3.2330 5.8028 -2.1831 14 6 2.3071 6.8461 -2.7537 15 1 1.2532 6.8190 -2.5193 16 6 2.8055 7.8352 -3.5749 17 7 1.9845 8.6794 -4.1603 18 14 4.6469 7.9760 -3.8558 19 1 5.0484 7.0757 -4.9665 20 1 4.9882 9.3779 -4.2071 21 1 5.3678 7.5863 -2.6175 22 6 4.0387 6.1783 -0.9379 23 6 2.8669 5.1999 -0.8254 24 6 4.1278 2.6771 -2.1387 25 8 2.9792 2.3403 -2.3304 26 6 3.5346 -0.7321 -0.0003 27 7 2.2891 -1.1328 -0.0002 28 1 -0.3634 0.0005 1.0277 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5134 31 1 1.9281 2.1194 0.0006 32 1 4.5444 2.4803 0.5124 33 1 5.5823 1.0343 0.5121 34 1 6.7624 2.9776 -0.4633 35 1 7.2356 2.2640 -2.0383 36 1 4.5749 5.4680 -3.8348 37 1 3.1390 4.4161 -3.8290 38 1 2.3352 9.3755 -4.7377 39 1 5.0454 5.7703 -0.8478 40 1 3.8989 7.1799 -0.5311 41 1 1.9565 5.5581 -0.3447 42 1 3.1025 4.1483 -0.6618 43 1 4.4053 -1.3710 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596261152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:14 Heat of formation + Delta-G solvation = 25.769736 kcal Electronic energy + Delta-G solvation = -27764.560720 eV Core-core repulsion = 24005.218116 eV Total energy + Delta-G solvation = -3759.342604 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.12730 -41.91702 -39.52687 -38.65239 -36.84871 -35.47004 -34.36620 -33.78344 -31.72456 -29.44820 -28.62501 -27.14212 -26.97435 -25.13018 -23.46656 -22.52782 -21.95198 -21.60887 -20.92609 -20.11477 -18.81697 -18.07338 -17.78423 -17.60873 -17.27695 -16.62302 -16.24051 -15.83953 -15.46730 -15.28037 -15.19029 -15.00403 -14.86941 -14.58702 -14.38366 -14.08159 -13.93986 -13.85840 -13.57836 -13.27908 -13.05891 -12.78649 -12.78187 -12.68355 -12.32894 -12.28348 -11.99506 -11.87726 -11.41671 -11.33240 -11.04551 -10.94860 -10.80283 -10.51154 -10.32978 -10.22551 -9.16087 -8.40400 -6.45909 0.61803 1.10145 1.24549 1.31898 1.51757 1.65950 1.78434 1.83794 2.02194 2.26889 2.86658 3.14687 3.28652 3.35814 3.57775 3.81636 3.95720 4.05149 4.10196 4.12235 4.23704 4.39684 4.41174 4.42028 4.47535 4.50807 4.53405 4.63559 4.66198 4.74137 4.75675 4.88306 4.94094 5.01910 5.04270 5.23601 5.26786 5.37201 5.42045 5.57569 5.91236 6.01762 6.19787 6.19882 6.49809 6.59947 6.87820 6.89515 7.21909 8.74567 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017687 B = 0.004708 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.687011 B = 5946.427777 C = 7020.194716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.388 5.388 3 C 0.074 3.926 4 C -0.249 4.249 5 C -0.017 4.017 6 C -0.104 4.104 7 H 0.149 0.851 8 C -0.134 4.134 9 C 0.509 3.491 10 O -0.525 6.525 11 N -0.577 5.577 12 C 0.133 3.867 13 C -0.034 4.034 14 C -0.487 4.487 15 H 0.039 0.961 16 C 0.036 3.964 17 N -0.938 5.938 18 Si 0.924 3.076 19 H -0.274 1.274 20 H -0.292 1.292 21 H -0.235 1.235 22 C -0.180 4.180 23 C -0.154 4.154 24 C 0.518 3.482 25 O -0.501 6.501 26 C 0.057 3.943 27 N -0.341 5.341 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.159 0.841 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.269 0.731 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.241 -20.548 10.802 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.169 5.169 3 C -0.073 4.073 4 C -0.261 4.261 5 C -0.056 4.056 6 C -0.125 4.125 7 H 0.166 0.834 8 C -0.172 4.172 9 C 0.301 3.699 10 O -0.399 6.399 11 N -0.319 5.319 12 C 0.011 3.989 13 C -0.036 4.036 14 C -0.525 4.525 15 H 0.057 0.943 16 C -0.164 4.164 17 N -0.577 5.577 18 Si 0.750 3.250 19 H -0.200 1.200 20 H -0.219 1.219 21 H -0.158 1.158 22 C -0.218 4.218 23 C -0.191 4.191 24 C 0.309 3.691 25 O -0.373 6.373 26 C -0.129 4.129 27 N -0.162 5.162 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.177 0.823 32 H 0.088 0.912 33 H 0.152 0.848 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 7.955 -21.056 10.446 24.814 hybrid contribution 0.185 1.901 -0.979 2.146 sum 8.140 -19.155 9.466 22.865 Atomic orbital electron populations 1.22028 0.73304 1.04983 1.04222 1.48641 1.07495 1.03679 1.57134 1.22488 0.92025 0.93074 0.99728 1.20074 0.94278 0.94226 1.17508 1.19900 0.95245 0.98727 0.91719 1.22258 0.90934 0.99740 0.99565 0.83377 1.22753 0.99186 0.89902 1.05406 1.21940 0.80393 0.90305 0.77277 1.90770 1.59722 1.35467 1.53988 1.47181 1.13763 1.18197 1.52771 1.21358 0.94403 0.88212 0.94923 1.19531 0.99247 0.97416 0.87388 1.20380 0.93793 1.09259 1.29039 0.94274 1.25613 1.01550 0.94848 0.94341 1.70007 1.36865 1.19240 1.31569 0.86150 0.81570 0.76590 0.80696 1.20044 1.21865 1.15823 1.22996 0.94853 0.99235 1.04669 1.22767 0.98634 0.97160 1.00491 1.21647 0.89343 0.81008 0.77078 1.90735 1.19295 1.73968 1.53318 1.24286 0.95454 0.94700 0.98451 1.77235 1.02935 1.09461 1.26590 0.89398 0.89087 0.89044 0.82335 0.91189 0.84846 0.83009 0.82668 0.91721 0.90315 0.92202 0.89765 0.90737 0.90289 0.88883 0.76834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.68 11.47 127.77 1.47 3.14 16 2 N -0.39 -9.36 4.01 -369.55 -1.48 -10.84 16 3 C 0.07 1.77 9.41 83.54 0.79 2.56 16 4 C -0.25 -4.75 4.82 -20.14 -0.10 -4.84 16 5 C -0.02 -0.22 5.04 29.85 0.15 -0.06 16 6 C -0.10 -1.51 3.13 -10.93 -0.03 -1.54 16 7 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 8 C -0.13 -1.69 6.67 30.46 0.20 -1.49 16 9 C 0.51 14.32 6.49 87.99 0.57 14.89 16 10 O -0.52 -19.25 16.72 -2.89 -0.05 -19.30 16 11 N -0.58 -18.66 1.84 -756.66 -1.39 -20.05 16 12 C 0.13 5.69 5.30 86.38 0.46 6.15 16 13 C -0.03 -1.59 1.38 -52.93 -0.07 -1.67 16 14 C -0.49 -27.96 9.40 25.60 0.24 -27.72 16 15 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 16 C 0.04 2.10 5.47 84.65 0.46 2.56 16 17 N -0.94 -58.69 13.96 21.45 0.30 -58.40 16 18 Si 0.92 46.50 25.01 68.60 1.72 48.22 16 19 H -0.27 -13.49 6.74 99.48 0.67 -12.82 16 20 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 21 H -0.24 -11.48 5.99 99.48 0.60 -10.88 16 22 C -0.18 -7.52 7.96 30.62 0.24 -7.28 16 23 C -0.15 -6.04 9.55 30.62 0.29 -5.75 16 24 C 0.52 14.21 5.29 87.99 0.47 14.67 16 25 O -0.50 -17.06 14.53 -2.85 -0.04 -17.10 16 26 C 0.06 1.05 11.96 85.24 1.02 2.07 16 27 N -0.34 -8.40 12.58 -57.02 -0.72 -9.12 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.16 4.02 7.90 -2.91 -0.02 3.99 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.15 1.10 7.74 -2.39 -0.02 1.08 16 35 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 2.98 4.42 -2.39 -0.01 2.97 16 37 H 0.08 3.52 7.86 -2.39 -0.02 3.50 16 38 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 39 H 0.08 3.25 5.59 -2.39 -0.01 3.24 16 40 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.09 3.14 5.50 -2.39 -0.01 3.13 16 43 H 0.22 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -81.81 348.53 5.37 -76.44 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.88 Total: 14.45 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 6.15 Total: -4.30 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -3.29 Total: -98.41 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.09 Total: -36.40 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.72 Total: 48.22 kcal Total: -81.81 5.37 -76.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596261152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.206 kcal (2) G-P(sol) polarization free energy of solvation -81.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds