Wall clock time and date at job start Tue Mar 31 2020 11:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34941 * 126.04017 * 2 1 4 4 C 1.35309 * 107.74824 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.04260 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47452 * 89.99781 * 5 4 3 7 7 H 1.09003 * 110.65785 * 56.47753 * 6 5 4 8 8 C 1.54227 * 110.60903 * 179.41275 * 6 5 4 9 9 C 1.51316 * 103.55657 * 118.29654 * 8 6 5 10 10 O 1.21218 * 125.40189 * 180.25257 * 9 8 6 11 11 N 1.33877 * 109.20440 * 0.38667 * 9 8 6 12 12 C 1.46497 * 122.76517 * 179.84438 * 11 9 8 13 13 C 1.53000 * 109.47109 * 270.64611 * 12 11 9 14 14 C 1.50694 * 115.55189 * 304.70857 * 13 12 11 15 15 H 1.08008 * 119.99804 * 95.29533 * 14 13 12 16 16 C 1.37867 * 120.00263 * 275.30351 * 14 13 12 17 17 N 1.31524 * 119.99917 * 7.24352 * 16 14 13 18 18 Si 1.86807 * 120.00206 * 187.24473 * 16 14 13 19 19 H 1.48498 * 109.46924 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46769 * 239.99503 * 18 16 14 21 21 H 1.48503 * 109.46793 * 119.99975 * 18 16 14 22 22 C 1.53003 * 117.49736 * 90.37641 * 13 12 11 23 23 C 1.53007 * 117.50040 * 159.03605 * 13 12 11 24 24 C 1.33886 * 114.47762 * 359.57524 * 11 9 8 25 25 O 1.21222 * 125.39634 * 180.29361 * 24 11 9 26 26 C 1.39864 * 107.92175 * 0.26509 * 4 3 2 27 27 N 1.30834 * 108.20132 * 359.55616 * 26 4 3 28 28 H 1.08997 * 109.47486 * 89.99657 * 1 2 3 29 29 H 1.09003 * 109.47001 * 209.99591 * 1 2 3 30 30 H 1.09004 * 109.46570 * 329.99278 * 1 2 3 31 31 H 1.08006 * 126.12600 * 0.04865 * 3 2 1 32 32 H 1.09004 * 109.47019 * 329.99930 * 5 4 3 33 33 H 1.09001 * 109.47663 * 210.00143 * 5 4 3 34 34 H 1.09003 * 110.60592 * 237.03474 * 8 6 5 35 35 H 1.09000 * 110.60322 * 359.97438 * 8 6 5 36 36 H 1.08999 * 109.47678 * 150.64592 * 12 11 9 37 37 H 1.08999 * 109.46856 * 30.64464 * 12 11 9 38 38 H 0.96990 * 119.99576 * 4.17087 * 17 16 14 39 39 H 1.08997 * 117.50119 * 214.99870 * 22 13 12 40 40 H 1.09002 * 117.49975 * 0.02726 * 22 13 12 41 41 H 1.09001 * 117.49532 * 359.97438 * 23 13 12 42 42 H 1.08998 * 117.49816 * 144.97129 * 23 13 12 43 43 H 1.08007 * 125.90347 * 179.73575 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5451 -0.0002 6 6 5.1827 1.8416 1.4423 7 1 5.3513 0.9155 1.9920 8 6 6.4440 2.7285 1.4732 9 6 5.9766 3.9856 2.1739 10 8 6.6634 4.9573 2.4053 11 7 4.6850 3.8534 2.5005 12 6 3.9320 4.8999 3.1962 13 6 4.0624 4.7027 4.7078 14 6 3.6541 3.3472 5.2241 15 1 4.3990 2.5796 5.3743 16 6 2.3296 3.0866 5.5046 17 7 1.4051 3.9673 5.1893 18 14 1.8482 1.4827 6.3326 19 1 3.0653 0.6690 6.5808 20 1 0.9209 0.7294 5.4507 21 1 1.1755 1.7748 7.6239 22 6 5.2215 5.4082 5.4148 23 6 3.7885 5.9120 5.6043 24 6 4.1366 2.6884 2.1338 25 8 2.9844 2.3636 2.3251 26 6 3.5346 -0.7321 -0.0071 27 7 2.2892 -1.1328 -0.0007 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5140 31 1 1.9282 2.1193 0.0007 32 1 4.5442 2.4804 -0.5134 33 1 5.5820 1.0344 -0.5146 34 1 7.2401 2.2438 2.0383 35 1 6.7763 2.9582 0.4608 36 1 2.8814 4.8419 2.9116 37 1 4.3294 5.8770 2.9216 38 1 1.6471 4.7723 4.7055 39 1 5.6886 4.8918 6.2534 40 1 5.8909 6.0131 4.8031 41 1 3.5158 6.8482 5.1170 42 1 3.3125 5.7271 6.5672 43 1 4.4054 -1.3711 -0.0132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596261156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:17 Heat of formation + Delta-G solvation = 38.768099 kcal Electronic energy + Delta-G solvation = -27767.982465 eV Core-core repulsion = 24009.203512 eV Total energy + Delta-G solvation = -3758.778953 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48101 -40.81266 -37.87060 -36.89947 -35.31335 -34.24717 -32.78541 -31.83560 -30.63752 -28.09687 -26.48332 -25.85073 -24.85695 -23.85536 -21.40346 -21.20838 -20.96477 -20.29870 -19.71027 -18.68201 -16.89792 -16.70783 -16.46832 -15.86545 -15.62236 -15.21861 -14.44730 -14.26537 -14.14959 -13.81303 -13.72329 -13.58143 -13.37577 -13.12320 -12.96116 -12.76160 -12.64108 -12.38501 -12.28861 -11.79184 -11.78253 -11.45958 -11.13814 -11.05625 -10.74192 -10.45334 -10.38893 -10.13339 -9.97533 -9.81224 -9.32453 -9.15623 -8.88399 -8.50145 -8.43037 -8.21255 -8.13490 -6.30409 -4.04072 2.12068 2.15878 2.70808 2.93903 3.19318 3.43729 3.47811 3.51945 3.60895 4.40245 4.55153 4.60065 4.65150 4.80175 5.04099 5.06558 5.12178 5.18779 5.24373 5.36703 5.40425 5.44729 5.48098 5.59474 5.76052 5.79769 5.84739 5.92649 6.01834 6.10729 6.16202 6.20374 6.31933 6.39477 6.64014 6.68218 6.81369 6.86380 7.17196 7.18412 7.30388 7.62515 7.87053 8.00612 8.25833 8.43768 8.55200 8.91583 9.70498 11.08461 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.006237 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.435546 B = 4488.260412 C = 6159.318811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.375 5.375 3 C 0.099 3.901 4 C -0.250 4.250 5 C -0.016 4.016 6 C -0.124 4.124 7 H 0.117 0.883 8 C -0.155 4.155 9 C 0.524 3.476 10 O -0.501 6.501 11 N -0.547 5.547 12 C 0.138 3.862 13 C 0.005 3.995 14 C -0.566 4.566 15 H 0.045 0.955 16 C 0.046 3.954 17 N -0.897 5.897 18 Si 1.063 2.937 19 H -0.292 1.292 20 H -0.288 1.288 21 H -0.288 1.288 22 C -0.190 4.190 23 C -0.172 4.172 24 C 0.530 3.470 25 O -0.444 6.444 26 C 0.055 3.945 27 N -0.307 5.307 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.272 0.728 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 -4.988 -13.192 14.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.156 5.156 3 C -0.048 4.048 4 C -0.261 4.261 5 C -0.055 4.055 6 C -0.146 4.146 7 H 0.135 0.865 8 C -0.195 4.195 9 C 0.313 3.687 10 O -0.376 6.376 11 N -0.288 5.288 12 C 0.017 3.983 13 C 0.004 3.996 14 C -0.603 4.603 15 H 0.063 0.937 16 C -0.161 4.161 17 N -0.531 5.531 18 Si 0.892 3.108 19 H -0.218 1.218 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.228 4.228 23 C -0.210 4.210 24 C 0.317 3.683 25 O -0.312 6.312 26 C -0.132 4.132 27 N -0.128 5.128 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.184 0.816 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.753 -6.488 -12.327 14.040 hybrid contribution 1.788 1.639 -0.244 2.438 sum 3.541 -4.849 -12.571 13.931 Atomic orbital electron populations 1.21832 0.74439 1.04863 1.02732 1.48338 1.06536 1.03846 1.56872 1.22244 0.90778 0.93121 0.98635 1.19757 0.94126 0.93793 1.18438 1.19685 0.94679 0.98350 0.92744 1.22146 0.93419 1.00147 0.98896 0.86460 1.22540 0.99101 0.94314 1.03497 1.20635 0.81609 0.88778 0.77658 1.90691 1.58474 1.34427 1.53959 1.46440 1.12413 1.18778 1.51135 1.21447 0.95720 0.87103 0.94063 1.19383 0.98124 0.93996 0.88131 1.21046 0.95008 0.95547 1.48732 0.93714 1.25480 0.92495 1.02767 0.95389 1.70669 1.35548 1.10806 1.36096 0.83640 0.75379 0.75442 0.76308 1.21765 1.21477 1.21478 1.22910 0.91058 1.05094 1.03692 1.22726 0.98374 0.97503 1.02397 1.20336 0.88777 0.81382 0.77826 1.90766 1.17341 1.72475 1.50626 1.23655 0.95149 0.94339 1.00026 1.77264 1.01676 1.08612 1.25256 0.91138 0.89475 0.89239 0.81560 0.91253 0.89713 0.86810 0.86918 0.89740 0.92088 0.91729 0.90464 0.90890 0.91595 0.89649 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.13 11.47 59.85 0.69 1.82 16 2 N -0.37 -5.52 4.01 -68.16 -0.27 -5.79 16 3 C 0.10 1.44 9.44 -17.23 -0.16 1.28 16 4 C -0.25 -3.34 4.84 -105.06 -0.51 -3.84 16 5 C -0.02 -0.17 5.04 -27.88 -0.14 -0.31 16 6 C -0.12 -1.62 3.13 -90.83 -0.28 -1.90 16 7 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 8 C -0.15 -1.81 6.67 -26.94 -0.18 -1.99 16 9 C 0.52 9.04 8.08 -11.08 -0.09 8.95 16 10 O -0.50 -9.96 17.49 5.61 0.10 -9.86 16 11 N -0.55 -10.54 2.41 -115.34 -0.28 -10.82 16 12 C 0.14 3.00 5.40 -4.04 -0.02 2.98 16 13 C 0.00 0.12 1.17 -155.66 -0.18 -0.07 16 14 C -0.57 -15.39 7.59 -34.45 -0.26 -15.65 16 15 H 0.04 1.28 7.82 -52.48 -0.41 0.87 16 16 C 0.05 1.28 5.39 -17.82 -0.10 1.18 16 17 N -0.90 -26.04 13.48 55.43 0.75 -25.29 16 18 Si 1.06 26.16 29.91 -169.99 -5.08 21.08 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.19 -4.30 9.93 -26.69 -0.26 -4.56 16 23 C -0.17 -3.97 8.96 -26.69 -0.24 -4.21 16 24 C 0.53 9.83 6.56 -11.08 -0.07 9.76 16 25 O -0.44 -9.82 14.53 5.61 0.08 -9.74 16 26 C 0.05 0.73 11.96 -17.37 -0.21 0.52 16 27 N -0.31 -4.78 12.58 30.62 0.39 -4.40 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.17 2.31 7.88 -52.48 -0.41 1.89 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.11 0.97 7.74 -51.93 -0.40 0.57 16 36 H 0.08 1.97 7.12 -51.93 -0.37 1.60 16 37 H 0.06 1.25 7.80 -51.93 -0.40 0.85 16 38 H 0.27 7.79 6.11 -40.82 -0.25 7.54 16 39 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 43 H 0.18 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -34.92 363.42 -6.99 -41.91 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.12 Total: 3.48 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.02 Total: -6.04 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.58 Total: -46.30 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: 0.18 Total: -19.61 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -5.08 Total: 21.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.92 -6.99 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596261156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.680 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds