Wall clock time and date at job start Tue Mar 31 2020 11:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34941 * 126.04017 * 2 1 4 4 C 1.35309 * 107.74824 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.04260 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47452 * 89.99781 * 5 4 3 7 7 H 1.09003 * 110.65785 * 56.47753 * 6 5 4 8 8 C 1.54227 * 110.60903 * 179.41275 * 6 5 4 9 9 C 1.51316 * 103.55657 * 118.29654 * 8 6 5 10 10 O 1.21218 * 125.40189 * 180.25257 * 9 8 6 11 11 N 1.33877 * 109.20440 * 0.38667 * 9 8 6 12 12 C 1.46497 * 122.76517 * 179.84438 * 11 9 8 13 13 C 1.53000 * 109.47109 * 270.64611 * 12 11 9 14 14 C 1.50694 * 115.55189 * 304.70857 * 13 12 11 15 15 H 1.08008 * 119.99804 * 95.29533 * 14 13 12 16 16 C 1.37867 * 120.00263 * 275.30351 * 14 13 12 17 17 N 1.31524 * 119.99917 * 7.24352 * 16 14 13 18 18 Si 1.86807 * 120.00206 * 187.24473 * 16 14 13 19 19 H 1.48498 * 109.46924 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46769 * 239.99503 * 18 16 14 21 21 H 1.48503 * 109.46793 * 119.99975 * 18 16 14 22 22 C 1.53003 * 117.49736 * 90.37641 * 13 12 11 23 23 C 1.53007 * 117.50040 * 159.03605 * 13 12 11 24 24 C 1.33886 * 114.47762 * 359.57524 * 11 9 8 25 25 O 1.21222 * 125.39634 * 180.29361 * 24 11 9 26 26 C 1.39864 * 107.92175 * 0.26509 * 4 3 2 27 27 N 1.30834 * 108.20132 * 359.55616 * 26 4 3 28 28 H 1.08997 * 109.47486 * 89.99657 * 1 2 3 29 29 H 1.09003 * 109.47001 * 209.99591 * 1 2 3 30 30 H 1.09004 * 109.46570 * 329.99278 * 1 2 3 31 31 H 1.08006 * 126.12600 * 0.04865 * 3 2 1 32 32 H 1.09004 * 109.47019 * 329.99930 * 5 4 3 33 33 H 1.09001 * 109.47663 * 210.00143 * 5 4 3 34 34 H 1.09003 * 110.60592 * 237.03474 * 8 6 5 35 35 H 1.09000 * 110.60322 * 359.97438 * 8 6 5 36 36 H 1.08999 * 109.47678 * 150.64592 * 12 11 9 37 37 H 1.08999 * 109.46856 * 30.64464 * 12 11 9 38 38 H 0.96990 * 119.99576 * 4.17087 * 17 16 14 39 39 H 1.08997 * 117.50119 * 214.99870 * 22 13 12 40 40 H 1.09002 * 117.49975 * 0.02726 * 22 13 12 41 41 H 1.09001 * 117.49532 * 359.97438 * 23 13 12 42 42 H 1.08998 * 117.49816 * 144.97129 * 23 13 12 43 43 H 1.08007 * 125.90347 * 179.73575 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5451 -0.0002 6 6 5.1827 1.8416 1.4423 7 1 5.3513 0.9155 1.9920 8 6 6.4440 2.7285 1.4732 9 6 5.9766 3.9856 2.1739 10 8 6.6634 4.9573 2.4053 11 7 4.6850 3.8534 2.5005 12 6 3.9320 4.8999 3.1962 13 6 4.0624 4.7027 4.7078 14 6 3.6541 3.3472 5.2241 15 1 4.3990 2.5796 5.3743 16 6 2.3296 3.0866 5.5046 17 7 1.4051 3.9673 5.1893 18 14 1.8482 1.4827 6.3326 19 1 3.0653 0.6690 6.5808 20 1 0.9209 0.7294 5.4507 21 1 1.1755 1.7748 7.6239 22 6 5.2215 5.4082 5.4148 23 6 3.7885 5.9120 5.6043 24 6 4.1366 2.6884 2.1338 25 8 2.9844 2.3636 2.3251 26 6 3.5346 -0.7321 -0.0071 27 7 2.2892 -1.1328 -0.0007 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5140 31 1 1.9282 2.1193 0.0007 32 1 4.5442 2.4804 -0.5134 33 1 5.5820 1.0344 -0.5146 34 1 7.2401 2.2438 2.0383 35 1 6.7763 2.9582 0.4608 36 1 2.8814 4.8419 2.9116 37 1 4.3294 5.8770 2.9216 38 1 1.6471 4.7723 4.7055 39 1 5.6886 4.8918 6.2534 40 1 5.8909 6.0131 4.8031 41 1 3.5158 6.8482 5.1170 42 1 3.3125 5.7271 6.5672 43 1 4.4054 -1.3711 -0.0132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596261156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:17 Heat of formation + Delta-G solvation = 17.071225 kcal Electronic energy + Delta-G solvation = -27768.923312 eV Core-core repulsion = 24009.203512 eV Total energy + Delta-G solvation = -3759.719800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.77180 -41.89802 -39.31081 -38.73267 -36.67715 -35.47968 -33.97722 -33.80580 -31.74273 -29.19485 -27.93945 -26.94213 -26.92492 -25.04655 -23.14435 -22.54347 -21.99560 -21.79978 -21.09381 -20.13361 -18.69989 -17.98224 -17.70161 -17.32610 -17.02672 -16.23812 -15.91897 -15.74764 -15.52494 -15.32205 -15.16086 -14.98451 -14.77257 -14.48202 -14.41300 -13.94118 -13.92558 -13.63489 -13.31671 -13.27548 -13.03662 -12.79814 -12.74976 -12.70128 -12.28972 -12.07495 -12.02707 -11.73975 -11.42712 -11.27145 -10.73946 -10.64492 -10.49786 -10.35245 -10.24371 -10.15392 -9.16478 -8.50886 -6.23126 0.80559 1.08323 1.43054 1.51680 1.63928 1.75801 1.79610 1.95838 2.15617 2.52202 3.21129 3.27212 3.34416 3.48297 3.62866 3.81635 4.03110 4.06414 4.16495 4.21067 4.36665 4.38094 4.38733 4.40525 4.47992 4.53702 4.61501 4.62179 4.74879 4.79473 4.89114 4.90524 4.96583 4.99074 5.02414 5.21718 5.32103 5.40501 5.40897 5.88829 6.09964 6.18588 6.19109 6.30365 6.66865 6.73761 6.85311 7.13303 7.55316 8.88985 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.006237 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.435546 B = 4488.260412 C = 6159.318811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.389 5.389 3 C 0.076 3.924 4 C -0.251 4.251 5 C -0.010 4.010 6 C -0.109 4.109 7 H 0.126 0.874 8 C -0.133 4.133 9 C 0.515 3.485 10 O -0.532 6.532 11 N -0.559 5.559 12 C 0.148 3.852 13 C -0.016 4.016 14 C -0.561 4.561 15 H 0.026 0.974 16 C 0.007 3.993 17 N -0.920 5.920 18 Si 1.094 2.906 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.278 1.278 22 C -0.171 4.171 23 C -0.170 4.170 24 C 0.517 3.483 25 O -0.491 6.491 26 C 0.054 3.946 27 N -0.342 5.342 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.161 0.839 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.265 0.735 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.882 -6.037 -14.605 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.171 5.171 3 C -0.071 4.071 4 C -0.263 4.263 5 C -0.048 4.048 6 C -0.131 4.131 7 H 0.144 0.856 8 C -0.172 4.172 9 C 0.307 3.693 10 O -0.408 6.408 11 N -0.300 5.300 12 C 0.025 3.975 13 C -0.017 4.017 14 C -0.599 4.599 15 H 0.045 0.955 16 C -0.195 4.195 17 N -0.555 5.555 18 Si 0.920 3.080 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.204 1.204 22 C -0.208 4.208 23 C -0.208 4.208 24 C 0.306 3.694 25 O -0.362 6.362 26 C -0.132 4.132 27 N -0.164 5.164 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.178 0.822 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.159 0.841 35 H 0.175 0.825 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.310 -7.540 -13.746 16.260 hybrid contribution 1.009 2.015 0.207 2.263 sum 5.319 -5.524 -13.539 15.560 Atomic orbital electron populations 1.22014 0.73334 1.04751 1.04323 1.48633 1.07515 1.03735 1.57174 1.22452 0.91936 0.93077 0.99638 1.20134 0.94544 0.94257 1.17336 1.19842 0.94909 0.98741 0.91323 1.22193 0.91775 0.99384 0.99704 0.85610 1.22661 0.98594 0.90415 1.05497 1.21648 0.80442 0.90157 0.77069 1.90674 1.58791 1.36090 1.55224 1.46697 1.13454 1.18655 1.51159 1.21056 0.95015 0.88784 0.92624 1.19470 0.99483 0.93136 0.89657 1.21102 0.94323 0.96383 1.48079 0.95546 1.26374 0.92969 1.04371 0.95788 1.70746 1.35912 1.11284 1.37607 0.83228 0.75570 0.73265 0.75964 1.20434 1.22148 1.20389 1.22823 0.90649 1.04283 1.03079 1.22662 0.98765 0.98040 1.01372 1.21438 0.89258 0.81503 0.77175 1.90745 1.19642 1.73301 1.52466 1.24272 0.95441 0.94874 0.98578 1.77202 1.02932 1.09547 1.26677 0.88715 0.89430 0.89479 0.82153 0.90581 0.85038 0.84098 0.82503 0.92299 0.91222 0.92508 0.90901 0.89636 0.89722 0.91718 0.77001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.17 11.47 127.77 1.47 3.64 16 2 N -0.39 -11.49 4.01 -369.57 -1.48 -12.97 16 3 C 0.08 2.20 9.44 83.54 0.79 2.99 16 4 C -0.25 -6.17 4.84 -20.15 -0.10 -6.27 16 5 C -0.01 -0.17 5.04 29.85 0.15 -0.02 16 6 C -0.11 -2.45 3.13 -10.93 -0.03 -2.48 16 7 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 8 C -0.13 -2.44 6.67 30.46 0.20 -2.24 16 9 C 0.52 16.48 8.08 87.99 0.71 17.19 16 10 O -0.53 -20.01 17.49 -2.84 -0.05 -20.06 16 11 N -0.56 -21.09 2.41 -756.66 -1.82 -22.91 16 12 C 0.15 6.51 5.40 86.38 0.47 6.98 16 13 C -0.02 -0.80 1.17 -52.93 -0.06 -0.86 16 14 C -0.56 -30.90 7.59 25.60 0.19 -30.71 16 15 H 0.03 1.52 7.82 -2.91 -0.02 1.49 16 16 C 0.01 0.42 5.39 84.65 0.46 0.88 16 17 N -0.92 -54.76 13.48 21.44 0.29 -54.47 16 18 Si 1.09 53.30 29.91 68.60 2.05 55.35 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 22 C -0.17 -7.63 9.93 30.62 0.30 -7.32 16 23 C -0.17 -7.91 8.96 30.62 0.27 -7.64 16 24 C 0.52 18.71 6.56 87.99 0.58 19.29 16 25 O -0.49 -22.10 14.53 -2.85 -0.04 -22.15 16 26 C 0.05 1.32 11.96 85.24 1.02 2.33 16 27 N -0.34 -10.38 12.58 -57.02 -0.72 -11.10 16 28 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.16 4.66 7.88 -2.91 -0.02 4.64 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.16 1.62 7.74 -2.39 -0.02 1.60 16 36 H 0.06 2.86 7.12 -2.39 -0.02 2.84 16 37 H 0.07 2.87 7.80 -2.39 -0.02 2.86 16 38 H 0.26 15.69 6.11 -92.72 -0.57 15.12 16 39 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 41 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 42 H 0.06 3.26 8.14 -2.39 -0.02 3.24 16 43 H 0.21 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -78.86 363.42 5.86 -72.99 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 1.22 Total: 19.53 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 6.42 Total: -4.22 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -3.73 Total: -101.45 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.09 Total: -42.21 kcal Atomic # 14 Polarization: 53.30 SS G_CDS: 2.05 Total: 55.35 kcal Total: -78.86 5.86 -72.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596261156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.066 kcal (2) G-P(sol) polarization free energy of solvation -78.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds