Wall clock time and date at job start Tue Mar 31 2020 11:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 119.99869 * 2 1 4 4 O 1.21491 * 119.99948 * 359.97438 * 3 2 1 5 5 C 1.48333 * 119.99824 * 179.97438 * 3 2 1 6 6 C 1.39310 * 119.56940 * 179.97438 * 5 3 2 7 7 C 1.38448 * 119.18700 * 179.76703 * 6 5 3 8 8 C 1.39870 * 118.36127 * 0.49956 * 7 6 5 9 9 C 1.48005 * 120.46401 * 179.78157 * 8 7 6 10 10 O 1.21529 * 119.99813 * 221.15970 * 9 8 7 11 11 N 1.34773 * 120.00033 * 41.43478 * 9 8 7 12 12 C 1.46921 * 120.63445 * 5.29086 * 11 9 8 13 13 C 1.53628 * 108.54481 * 126.36694 * 12 11 9 14 14 C 1.53041 * 109.23754 * 54.86255 * 13 12 11 15 15 C 1.53038 * 109.53751 * 298.50577 * 14 13 12 16 16 H 1.08994 * 109.50296 * 301.42031 * 15 14 13 17 17 C 1.50696 * 109.49722 * 181.31686 * 15 14 13 18 18 H 1.08002 * 120.00279 * 0.17162 * 17 15 14 19 19 C 1.37885 * 119.99805 * 180.16424 * 17 15 14 20 20 N 1.31511 * 120.00191 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47371 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47278 * 119.99651 * 21 19 17 24 24 H 1.48500 * 109.47076 * 240.00065 * 21 19 17 25 25 C 1.46933 * 120.63102 * 185.57579 * 11 9 8 26 26 C 1.39727 * 119.07181 * 359.49973 * 8 7 6 27 27 N 1.31415 * 120.71671 * 0.25749 * 26 8 7 28 28 H 1.09003 * 109.47112 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47431 * 299.99713 * 1 2 3 30 30 H 1.09002 * 109.47083 * 60.00681 * 1 2 3 31 31 H 0.97003 * 120.00321 * 179.97438 * 2 1 3 32 32 H 1.07992 * 120.40241 * 0.02562 * 6 5 3 33 33 H 1.08000 * 120.82052 * 180.26908 * 7 6 5 34 34 H 1.09001 * 109.59350 * 246.20717 * 12 11 9 35 35 H 1.09011 * 109.58480 * 6.62847 * 12 11 9 36 36 H 1.08992 * 109.63337 * 294.87079 * 13 12 11 37 37 H 1.09000 * 109.45910 * 174.74344 * 13 12 11 38 38 H 1.08999 * 109.45501 * 178.49247 * 14 13 12 39 39 H 1.08998 * 109.44942 * 58.52759 * 14 13 12 40 40 H 0.97000 * 119.99886 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.58525 * 353.36862 * 25 11 9 42 42 H 1.08996 * 109.58912 * 113.65613 * 25 11 9 43 43 H 1.07999 * 119.63967 * 180.23242 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5313 2.2193 -0.0005 5 6 3.6222 1.1672 0.0006 6 6 4.3096 2.3789 0.0000 7 6 5.6941 2.3696 0.0055 8 6 6.3503 1.1344 0.0006 9 6 7.8289 1.0703 0.0013 10 8 8.4021 0.2552 -0.6946 11 7 8.5396 1.9120 0.7777 12 6 7.8621 2.8190 1.7141 13 6 8.4597 2.6115 3.1141 14 6 9.9774 2.7970 3.0471 15 6 10.5798 1.7507 2.1067 16 1 10.3315 0.7522 2.4664 17 6 12.0774 1.9135 2.0665 18 1 12.5529 2.6842 2.6550 19 6 12.8407 1.0783 1.2783 20 7 12.2618 0.1400 0.5614 21 14 14.6972 1.2797 1.2290 22 1 15.0975 2.3998 2.1181 23 1 15.3436 0.0252 1.6909 24 1 15.1263 1.5747 -0.1617 25 6 10.0065 1.9444 0.6993 26 6 5.5903 -0.0381 0.0012 27 7 4.2772 0.0130 0.0011 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 1.9500 -0.8400 0.0004 32 1 3.7692 3.3138 -0.0004 33 1 6.2536 3.2934 0.0096 34 1 8.0143 3.8510 1.3981 35 1 6.7956 2.5942 1.7336 36 1 8.2313 1.6050 3.4643 37 1 8.0341 3.3416 3.8025 38 1 10.4022 2.6770 4.0437 39 1 10.2048 3.7953 2.6732 40 1 12.7988 -0.4477 0.0073 41 1 10.3555 1.1423 0.0490 42 1 10.3299 2.9056 0.2999 43 1 6.0876 -0.9968 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:06 Heat of formation + Delta-G solvation = -32.408034 kcal Electronic energy + Delta-G solvation = -26236.159359 eV Core-core repulsion = 22474.293978 eV Total energy + Delta-G solvation = -3761.865381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.03333 -39.75032 -38.65589 -36.77717 -34.99535 -33.82696 -32.71222 -31.84818 -31.62333 -29.80424 -27.70655 -25.54341 -25.21434 -24.09134 -23.50249 -21.91948 -21.14028 -20.19919 -18.88303 -18.54178 -17.30689 -16.83092 -16.19565 -15.80757 -15.71462 -15.55088 -15.15550 -14.70031 -14.49031 -14.27909 -13.96798 -13.83037 -13.57058 -13.29594 -13.07901 -12.98003 -12.70466 -12.61105 -12.48878 -12.21598 -11.93650 -11.08797 -11.01717 -10.64651 -10.60156 -10.52689 -10.31514 -10.07604 -9.98874 -9.91195 -9.58870 -9.46395 -9.26961 -9.16692 -8.97008 -8.50008 -7.89430 -6.05171 -4.14097 0.20914 0.95529 2.34765 2.81380 3.10577 3.26540 3.35466 3.38168 3.44242 3.70914 3.88952 4.38471 4.50825 4.57972 4.61872 4.77925 4.87734 5.02796 5.16119 5.19453 5.25369 5.38168 5.42784 5.50182 5.56429 5.68431 5.78894 5.87763 6.03676 6.07838 6.22574 6.26092 6.52199 6.57050 6.76253 6.89434 7.01865 7.07410 7.13443 7.46578 7.56217 7.79103 7.86183 7.91169 8.08519 8.31363 8.61848 8.90287 9.52043 11.00111 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030555 B = 0.002781 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.170020 B =10067.596550 C =10580.857339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.717 5.717 3 C 0.573 3.427 4 O -0.532 6.532 5 C 0.082 3.918 6 C -0.116 4.116 7 C -0.054 4.054 8 C -0.140 4.140 9 C 0.547 3.453 10 O -0.520 6.520 11 N -0.595 5.595 12 C 0.098 3.902 13 C -0.133 4.133 14 C -0.111 4.111 15 C 0.040 3.960 16 H 0.030 0.970 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.880 5.880 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.111 3.889 26 C 0.148 3.852 27 N -0.462 5.462 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.414 0.586 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.264 0.736 41 H 0.125 0.875 42 H 0.046 0.954 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.474 2.134 0.381 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.368 5.368 3 C 0.358 3.642 4 O -0.408 6.408 5 C -0.057 4.057 6 C -0.137 4.137 7 C -0.080 4.080 8 C -0.145 4.145 9 C 0.332 3.668 10 O -0.397 6.397 11 N -0.327 5.327 12 C -0.025 4.025 13 C -0.172 4.172 14 C -0.149 4.149 15 C 0.021 3.979 16 H 0.048 0.952 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.517 5.517 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.008 4.008 26 C -0.013 4.013 27 N -0.173 5.173 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.250 0.750 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.064 0.936 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -20.085 1.541 -0.119 20.144 hybrid contribution 1.735 0.478 -0.012 1.800 sum -18.350 2.019 -0.131 18.461 Atomic orbital electron populations 1.21608 0.79092 1.02577 1.02492 1.45636 1.07793 1.09180 1.74213 1.17938 0.85795 0.84027 0.76406 1.90782 1.68874 1.31314 1.49870 1.21168 0.94039 0.90005 1.00445 1.22031 0.94112 0.99469 0.98089 1.21951 0.94003 0.98188 0.93862 1.21514 0.96324 0.95219 1.01480 1.18059 0.85349 0.81945 0.81451 1.90842 1.70771 1.35972 1.42137 1.48478 1.09591 1.37027 1.37565 1.22068 0.96346 0.93727 0.90364 1.22021 0.98486 1.01514 0.95133 1.21639 0.92184 1.00440 1.00633 1.18970 0.94732 0.94331 0.89875 0.95191 1.21107 0.90734 1.16943 1.27169 0.92248 1.25062 0.98695 0.94953 0.95351 1.69884 1.35328 1.18750 1.27785 0.86532 0.85615 0.78013 0.77832 1.19787 1.20979 1.20957 1.22406 0.72730 1.02779 1.02924 1.22902 0.87873 0.98413 0.92073 1.67557 1.10286 1.28069 1.11421 0.90319 0.91959 0.91986 0.74989 0.82935 0.83116 0.91559 0.90753 0.92066 0.92073 0.92876 0.93087 0.92635 0.85713 0.93554 0.80887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.70 59.84 0.64 1.21 16 2 N -0.72 -6.46 5.70 -67.89 -0.39 -6.85 16 3 C 0.57 6.84 7.82 -12.11 -0.09 6.75 16 4 O -0.53 -7.60 16.31 5.37 0.09 -7.51 16 5 C 0.08 0.99 6.75 -82.94 -0.56 0.43 16 6 C -0.12 -1.30 9.62 -39.11 -0.38 -1.68 16 7 C -0.05 -0.63 7.51 -38.89 -0.29 -0.92 16 8 C -0.14 -2.02 5.11 -104.73 -0.53 -2.55 16 9 C 0.55 10.28 7.33 -12.26 -0.09 10.19 16 10 O -0.52 -12.03 16.37 5.34 0.09 -11.94 16 11 N -0.59 -11.10 2.97 -173.54 -0.51 -11.61 16 12 C 0.10 1.41 4.99 -3.49 -0.02 1.40 16 13 C -0.13 -2.04 6.10 -26.38 -0.16 -2.20 16 14 C -0.11 -2.10 5.10 -26.69 -0.14 -2.24 16 15 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.52 -13.67 8.56 -34.44 -0.29 -13.96 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 20 N -0.88 -24.98 11.39 55.43 0.63 -24.35 16 21 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.11 2.55 5.41 -3.70 -0.02 2.53 16 26 C 0.15 1.98 10.82 -17.17 -0.19 1.80 16 27 N -0.46 -5.69 9.52 -9.48 -0.09 -5.78 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.41 3.22 8.15 -40.82 -0.33 2.88 16 32 H 0.15 1.49 7.63 -52.49 -0.40 1.09 16 33 H 0.15 1.50 6.75 -52.49 -0.35 1.15 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.91 4.76 -51.92 -0.25 0.66 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.13 3.37 5.11 -51.93 -0.27 3.11 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.17 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 354.44 15.07 5.34 5.34 Total: -1.00 -32.06 354.44 -8.08 -40.14 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.79 Total: 3.72 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.42 Total: 3.08 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.36 Total: -48.60 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.18 Total: -19.45 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.06 -8.08 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.728 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds