Wall clock time and date at job start Tue Mar 31 2020 11:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 119.99869 * 2 1 4 4 O 1.21491 * 119.99948 * 359.97438 * 3 2 1 5 5 C 1.48333 * 119.99824 * 179.97438 * 3 2 1 6 6 C 1.39310 * 119.56940 * 179.97438 * 5 3 2 7 7 C 1.38448 * 119.18700 * 179.76703 * 6 5 3 8 8 C 1.39870 * 118.36127 * 0.49956 * 7 6 5 9 9 C 1.48005 * 120.46401 * 179.78157 * 8 7 6 10 10 O 1.21529 * 119.99813 * 221.15970 * 9 8 7 11 11 N 1.34773 * 120.00033 * 41.43478 * 9 8 7 12 12 C 1.46921 * 120.63445 * 5.29086 * 11 9 8 13 13 C 1.53628 * 108.54481 * 126.36694 * 12 11 9 14 14 C 1.53041 * 109.23754 * 54.86255 * 13 12 11 15 15 C 1.53038 * 109.53751 * 298.50577 * 14 13 12 16 16 H 1.08994 * 109.50296 * 301.42031 * 15 14 13 17 17 C 1.50696 * 109.49722 * 181.31686 * 15 14 13 18 18 H 1.08002 * 120.00279 * 0.17162 * 17 15 14 19 19 C 1.37885 * 119.99805 * 180.16424 * 17 15 14 20 20 N 1.31511 * 120.00191 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47371 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47278 * 119.99651 * 21 19 17 24 24 H 1.48500 * 109.47076 * 240.00065 * 21 19 17 25 25 C 1.46933 * 120.63102 * 185.57579 * 11 9 8 26 26 C 1.39727 * 119.07181 * 359.49973 * 8 7 6 27 27 N 1.31415 * 120.71671 * 0.25749 * 26 8 7 28 28 H 1.09003 * 109.47112 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47431 * 299.99713 * 1 2 3 30 30 H 1.09002 * 109.47083 * 60.00681 * 1 2 3 31 31 H 0.97003 * 120.00321 * 179.97438 * 2 1 3 32 32 H 1.07992 * 120.40241 * 0.02562 * 6 5 3 33 33 H 1.08000 * 120.82052 * 180.26908 * 7 6 5 34 34 H 1.09001 * 109.59350 * 246.20717 * 12 11 9 35 35 H 1.09011 * 109.58480 * 6.62847 * 12 11 9 36 36 H 1.08992 * 109.63337 * 294.87079 * 13 12 11 37 37 H 1.09000 * 109.45910 * 174.74344 * 13 12 11 38 38 H 1.08999 * 109.45501 * 178.49247 * 14 13 12 39 39 H 1.08998 * 109.44942 * 58.52759 * 14 13 12 40 40 H 0.97000 * 119.99886 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.58525 * 353.36862 * 25 11 9 42 42 H 1.08996 * 109.58912 * 113.65613 * 25 11 9 43 43 H 1.07999 * 119.63967 * 180.23242 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5313 2.2193 -0.0005 5 6 3.6222 1.1672 0.0006 6 6 4.3096 2.3789 0.0000 7 6 5.6941 2.3696 0.0055 8 6 6.3503 1.1344 0.0006 9 6 7.8289 1.0703 0.0013 10 8 8.4021 0.2552 -0.6946 11 7 8.5396 1.9120 0.7777 12 6 7.8621 2.8190 1.7141 13 6 8.4597 2.6115 3.1141 14 6 9.9774 2.7970 3.0471 15 6 10.5798 1.7507 2.1067 16 1 10.3315 0.7522 2.4664 17 6 12.0774 1.9135 2.0665 18 1 12.5529 2.6842 2.6550 19 6 12.8407 1.0783 1.2783 20 7 12.2618 0.1400 0.5614 21 14 14.6972 1.2797 1.2290 22 1 15.0975 2.3998 2.1181 23 1 15.3436 0.0252 1.6909 24 1 15.1263 1.5747 -0.1617 25 6 10.0065 1.9444 0.6993 26 6 5.5903 -0.0381 0.0012 27 7 4.2772 0.0130 0.0011 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 1.9500 -0.8400 0.0004 32 1 3.7692 3.3138 -0.0004 33 1 6.2536 3.2934 0.0096 34 1 8.0143 3.8510 1.3981 35 1 6.7956 2.5942 1.7336 36 1 8.2313 1.6050 3.4643 37 1 8.0341 3.3416 3.8025 38 1 10.4022 2.6770 4.0437 39 1 10.2048 3.7953 2.6732 40 1 12.7988 -0.4477 0.0073 41 1 10.3555 1.1423 0.0490 42 1 10.3299 2.9056 0.2999 43 1 6.0876 -0.9968 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:05 Heat of formation + Delta-G solvation = -54.951181 kcal Electronic energy + Delta-G solvation = -26237.136903 eV Core-core repulsion = 22474.293978 eV Total energy + Delta-G solvation = -3762.842926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.11136 -40.95108 -39.78587 -38.34790 -35.82279 -35.46277 -34.10023 -33.22438 -32.72730 -31.46408 -28.55617 -27.12146 -26.67056 -25.18516 -24.66635 -23.44193 -22.13031 -21.59695 -20.26578 -19.51581 -18.74009 -18.12848 -17.82674 -17.15507 -16.64180 -16.54478 -16.45212 -16.16898 -15.80827 -15.46156 -15.27117 -14.92710 -14.80671 -14.57997 -14.35101 -14.33464 -13.94944 -13.77624 -13.66259 -13.44973 -13.08545 -12.91355 -12.69736 -12.28987 -12.23125 -11.92307 -11.65492 -11.60604 -11.30896 -11.07517 -11.00090 -10.88685 -10.59886 -10.52923 -10.45493 -10.14144 -9.47575 -8.10840 -6.27470 -0.81980 -0.00285 1.30526 1.40021 1.42459 1.53640 1.78053 2.00265 2.09907 2.42453 2.66321 2.92873 3.17406 3.37417 3.61941 3.65255 3.81726 3.98216 4.03894 4.14177 4.32723 4.43984 4.56926 4.58089 4.63502 4.69618 4.75777 4.76557 4.83047 4.84560 4.94731 5.09085 5.21568 5.25279 5.28134 5.31799 5.36121 5.52098 5.61494 5.90034 5.99439 6.22904 6.32640 6.51052 6.57484 6.85411 7.02577 7.14252 7.42883 8.92622 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030555 B = 0.002781 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.170020 B =10067.596550 C =10580.857339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.707 5.707 3 C 0.569 3.431 4 O -0.559 6.559 5 C 0.080 3.920 6 C -0.107 4.107 7 C -0.037 4.037 8 C -0.153 4.153 9 C 0.545 3.455 10 O -0.578 6.578 11 N -0.597 5.597 12 C 0.094 3.906 13 C -0.128 4.128 14 C -0.106 4.106 15 C 0.038 3.962 16 H -0.014 1.014 17 C -0.533 4.533 18 H 0.062 0.938 19 C 0.010 3.990 20 N -0.914 5.914 21 Si 0.956 3.044 22 H -0.261 1.261 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.124 3.876 26 C 0.144 3.856 27 N -0.458 5.458 28 H 0.111 0.889 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.421 0.579 32 H 0.174 0.826 33 H 0.175 0.825 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.104 0.896 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.260 0.740 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.528 4.105 1.297 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.357 5.357 3 C 0.354 3.646 4 O -0.437 6.437 5 C -0.059 4.059 6 C -0.128 4.128 7 C -0.063 4.063 8 C -0.159 4.159 9 C 0.332 3.668 10 O -0.458 6.458 11 N -0.327 5.327 12 C -0.027 4.027 13 C -0.166 4.166 14 C -0.143 4.143 15 C 0.018 3.982 16 H 0.004 0.996 17 C -0.572 4.572 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.553 5.553 21 Si 0.781 3.219 22 H -0.185 1.185 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.002 3.998 26 C -0.016 4.016 27 N -0.169 5.169 28 H 0.129 0.871 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.258 0.742 32 H 0.192 0.808 33 H 0.193 0.807 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -22.175 3.515 0.835 22.467 hybrid contribution 2.266 -0.171 -0.276 2.290 sum -19.909 3.344 0.559 20.195 Atomic orbital electron populations 1.21823 0.77456 1.04711 1.02201 1.45716 1.08940 1.08653 1.72418 1.17954 0.85642 0.84441 0.76566 1.90771 1.69171 1.32234 1.51537 1.21466 0.94511 0.90345 0.99559 1.22235 0.93689 0.99963 0.96878 1.22127 0.94245 0.97735 0.92233 1.21096 0.93249 0.96950 1.04588 1.18663 0.87164 0.80701 0.80244 1.90806 1.72388 1.38239 1.44404 1.48447 1.08069 1.37846 1.38381 1.22437 0.97394 0.94188 0.88709 1.21996 0.95744 1.02147 0.96668 1.21525 0.94790 0.98996 0.99014 1.18908 0.94101 0.93687 0.91459 0.99585 1.21538 0.92496 1.16580 1.26573 0.91944 1.25872 1.03105 0.94782 0.95170 1.70079 1.36713 1.19780 1.28725 0.85538 0.80386 0.78084 0.77852 1.18485 1.21045 1.20857 1.21808 0.75754 1.00834 1.01389 1.22865 0.88291 0.98223 0.92184 1.67583 1.09413 1.28347 1.11551 0.87074 0.92175 0.92290 0.74243 0.80846 0.80744 0.88652 0.87859 0.93442 0.87726 0.93079 0.91979 0.93121 0.90274 0.93557 0.81292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.70 127.77 1.37 2.25 16 2 N -0.71 -11.20 5.70 -487.00 -2.78 -13.97 16 3 C 0.57 12.35 7.82 86.93 0.68 13.03 16 4 O -0.56 -14.77 16.31 -3.69 -0.06 -14.83 16 5 C 0.08 1.74 6.75 41.96 0.28 2.03 16 6 C -0.11 -2.05 9.62 22.58 0.22 -1.84 16 7 C -0.04 -0.77 7.51 22.72 0.17 -0.59 16 8 C -0.15 -4.28 5.11 -19.93 -0.10 -4.38 16 9 C 0.54 20.93 7.33 86.83 0.64 21.57 16 10 O -0.58 -28.36 16.37 -3.81 -0.06 -28.42 16 11 N -0.60 -22.26 2.97 -821.26 -2.44 -24.70 16 12 C 0.09 2.42 4.99 86.51 0.43 2.86 16 13 C -0.13 -3.55 6.10 30.82 0.19 -3.36 16 14 C -0.11 -3.87 5.10 30.62 0.16 -3.71 16 15 C 0.04 1.83 2.25 -11.46 -0.03 1.81 16 16 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 17 C -0.53 -28.61 8.56 25.60 0.22 -28.39 16 18 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 19 C 0.01 0.56 5.30 84.66 0.45 1.01 16 20 N -0.91 -54.57 11.39 21.45 0.24 -54.33 16 21 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 C 0.12 5.89 5.41 86.36 0.47 6.35 16 26 C 0.14 3.82 10.82 85.12 0.92 4.74 16 27 N -0.46 -10.61 9.52 -183.91 -1.75 -12.36 16 28 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.42 5.62 8.15 -92.71 -0.76 4.87 16 32 H 0.17 2.69 7.63 -2.91 -0.02 2.67 16 33 H 0.18 2.73 6.75 -2.91 -0.02 2.71 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.10 2.11 4.76 -2.38 -0.01 2.10 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 41 H 0.08 4.56 5.11 -2.39 -0.01 4.54 16 42 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.17 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -74.63 354.44 1.53 -73.10 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.29 Total: 16.56 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 6.06 Total: 13.37 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -6.72 Total: -105.36 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -0.12 Total: -43.25 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -74.63 1.53 -73.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.150 kcal (2) G-P(sol) polarization free energy of solvation -74.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds