Wall clock time and date at job start Tue Mar 31 2020 11:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34771 * 120.00380 * 2 1 4 4 O 1.21490 * 119.99852 * 359.97438 * 3 2 1 5 5 C 1.48335 * 120.00392 * 180.02562 * 3 2 1 6 6 C 1.39295 * 119.57549 * 179.97438 * 5 3 2 7 7 C 1.38448 * 119.19314 * 180.25423 * 6 5 3 8 8 C 1.39867 * 118.35694 * 359.50525 * 7 6 5 9 9 C 1.48005 * 120.46461 * 180.24317 * 8 7 6 10 10 O 1.21534 * 119.99520 * 134.67919 * 9 8 7 11 11 N 1.34775 * 120.00091 * 314.68793 * 9 8 7 12 12 C 1.46920 * 120.62890 * 4.16878 * 11 9 8 13 13 C 1.53189 * 108.77710 * 233.58714 * 12 11 9 14 14 C 1.53041 * 109.31642 * 305.37020 * 13 12 11 15 15 C 1.53044 * 109.53684 * 61.36123 * 14 13 12 16 16 H 1.08994 * 109.49900 * 58.58874 * 15 14 13 17 17 C 1.50701 * 109.49789 * 178.65588 * 15 14 13 18 18 H 1.07999 * 119.99732 * 5.36483 * 17 15 14 19 19 C 1.37874 * 120.00245 * 185.36406 * 17 15 14 20 20 N 1.31519 * 119.99848 * 355.30899 * 19 17 15 21 21 Si 1.86798 * 120.00357 * 175.30834 * 19 17 15 22 22 H 1.48500 * 109.47114 * 94.99876 * 21 19 17 23 23 H 1.48503 * 109.47106 * 215.00318 * 21 19 17 24 24 H 1.48504 * 109.47047 * 334.99816 * 21 19 17 25 25 C 1.46923 * 120.62954 * 183.89458 * 11 9 8 26 26 C 1.39736 * 119.07411 * 0.47183 * 8 7 6 27 27 N 1.31415 * 120.71557 * 359.77474 * 26 8 7 28 28 H 1.09008 * 109.47158 * 59.99942 * 1 2 3 29 29 H 1.08996 * 109.47453 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47416 * 300.00059 * 1 2 3 31 31 H 0.97005 * 119.99469 * 179.97438 * 2 1 3 32 32 H 1.08007 * 120.40358 * 359.97153 * 6 5 3 33 33 H 1.08001 * 120.82073 * 179.72754 * 7 6 5 34 34 H 1.08998 * 109.58869 * 353.37524 * 12 11 9 35 35 H 1.08999 * 109.58210 * 113.66224 * 12 11 9 36 36 H 1.09002 * 109.49673 * 65.31919 * 13 12 11 37 37 H 1.09001 * 109.50038 * 185.41745 * 13 12 11 38 38 H 1.08999 * 109.46590 * 181.38112 * 14 13 12 39 39 H 1.08999 * 109.45746 * 301.34643 * 14 13 12 40 40 H 0.97000 * 119.99875 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.58908 * 246.20281 * 25 11 9 42 42 H 1.09000 * 109.58803 * 6.62405 * 25 11 9 43 43 H 1.07999 * 119.64100 * 179.74807 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5315 2.2193 -0.0005 5 6 3.6223 1.1671 -0.0006 6 6 4.3098 2.3786 -0.0011 7 6 5.6942 2.3693 -0.0070 8 6 6.3503 1.1341 -0.0016 9 6 7.8290 1.0699 -0.0021 10 8 8.4043 0.3076 0.7496 11 7 8.5374 1.8568 -0.8360 12 6 7.8618 2.8476 -1.6847 13 6 8.2869 2.6227 -3.1392 14 6 9.8142 2.6536 -3.2308 15 6 10.4011 1.5276 -2.3764 16 1 10.0159 0.5690 -2.7236 17 6 11.9035 1.5382 -2.4934 18 1 12.3967 2.3256 -3.0441 19 6 12.6485 0.5429 -1.8974 20 7 12.0568 -0.3634 -1.1502 21 14 14.4981 0.4814 -2.1511 22 1 15.1754 1.1733 -1.0251 23 1 14.9440 -0.9342 -2.2024 24 1 14.8454 1.1563 -3.4275 25 6 10.0005 1.7441 -0.9092 26 6 5.5903 -0.0385 -0.0006 27 7 4.2772 0.0128 -0.0002 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.9499 -0.8401 0.0004 32 1 3.7694 3.3137 -0.0016 33 1 6.2537 3.2931 -0.0120 34 1 6.7820 2.7283 -1.5970 35 1 8.1453 3.8520 -1.3702 36 1 7.9216 1.6537 -3.4793 37 1 7.8688 3.4102 -3.7663 38 1 10.1187 2.5183 -4.2686 39 1 10.1804 3.6138 -2.8673 40 1 12.5808 -1.0639 -0.7312 41 1 10.4568 2.6602 -0.5342 42 1 10.3322 0.8964 -0.3096 43 1 6.0875 -0.9972 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:09 Heat of formation + Delta-G solvation = -30.734222 kcal Electronic energy + Delta-G solvation = -26251.761558 eV Core-core repulsion = 22489.968758 eV Total energy + Delta-G solvation = -3761.792799 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.04280 -39.75779 -38.65256 -36.79339 -34.99019 -33.83268 -32.71419 -31.85852 -31.62600 -29.83898 -27.70461 -25.55192 -25.24629 -24.07475 -23.52592 -21.92246 -21.12969 -20.22109 -18.88381 -18.53680 -17.30687 -16.86437 -16.20172 -15.81310 -15.71967 -15.57749 -15.14613 -14.71643 -14.46037 -14.28803 -13.98972 -13.84291 -13.64676 -13.25173 -13.07842 -12.98625 -12.71202 -12.60521 -12.47111 -12.18244 -11.93480 -11.11320 -11.00017 -10.64139 -10.62484 -10.55153 -10.33743 -10.06926 -9.99168 -9.90360 -9.58567 -9.45980 -9.27162 -9.13587 -8.96665 -8.54204 -7.90335 -6.07011 -4.14855 0.22400 0.95108 2.35890 2.81987 3.07617 3.26891 3.35015 3.37268 3.43719 3.70074 3.89215 4.38158 4.50166 4.56527 4.60631 4.78644 4.88347 5.03735 5.16656 5.18829 5.24218 5.37902 5.43352 5.50496 5.56949 5.67538 5.77761 5.87771 6.04284 6.07233 6.22319 6.26302 6.51630 6.55633 6.75338 6.87754 7.01696 7.07918 7.10156 7.47020 7.54288 7.76007 7.86748 7.89855 8.05704 8.30031 8.60260 8.89940 9.51341 10.99261 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028681 B = 0.002811 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.015465 B = 9957.813637 C =10436.418377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.717 5.717 3 C 0.574 3.426 4 O -0.533 6.533 5 C 0.081 3.919 6 C -0.116 4.116 7 C -0.057 4.057 8 C -0.138 4.138 9 C 0.548 3.452 10 O -0.523 6.523 11 N -0.593 5.593 12 C 0.093 3.907 13 C -0.134 4.134 14 C -0.111 4.111 15 C 0.041 3.959 16 H 0.032 0.968 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.880 5.880 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.114 3.886 26 C 0.148 3.852 27 N -0.461 5.461 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.414 0.586 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.264 0.736 41 H 0.047 0.953 42 H 0.119 0.881 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.971 3.210 0.818 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.368 5.368 3 C 0.359 3.641 4 O -0.409 6.409 5 C -0.057 4.057 6 C -0.137 4.137 7 C -0.083 4.083 8 C -0.144 4.144 9 C 0.333 3.667 10 O -0.400 6.400 11 N -0.325 5.325 12 C -0.030 4.030 13 C -0.172 4.172 14 C -0.149 4.149 15 C 0.021 3.979 16 H 0.050 0.950 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.517 5.517 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.006 4.006 26 C -0.013 4.013 27 N -0.172 5.172 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.250 0.750 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.137 0.863 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -19.585 2.622 1.325 19.804 hybrid contribution 1.745 0.320 -0.170 1.782 sum -17.840 2.942 1.155 18.118 Atomic orbital electron populations 1.21607 0.79094 1.02578 1.02489 1.45635 1.07793 1.09186 1.74201 1.17935 0.85792 0.84025 0.76397 1.90780 1.68882 1.31310 1.49895 1.21162 0.94040 0.89997 1.00516 1.22025 0.94091 0.99482 0.98055 1.21939 0.94041 0.98144 0.94172 1.21497 0.96307 0.95262 1.01312 1.18048 0.85384 0.81574 0.81711 1.90834 1.70675 1.38763 1.39744 1.48495 1.09943 1.35559 1.38515 1.22096 0.96995 0.92220 0.91678 1.21948 0.98982 1.01414 0.94850 1.21645 0.92069 1.00484 1.00717 1.19064 0.95417 0.93699 0.89671 0.94953 1.21063 0.90675 1.10288 1.34022 0.92300 1.25055 0.98656 0.95502 0.94757 1.69906 1.35746 1.15206 1.30871 0.86576 0.85533 0.77370 0.78519 1.20697 1.21128 1.19862 1.22507 0.72995 1.02783 1.02316 1.22886 0.87877 0.98361 0.92142 1.67561 1.10266 1.28058 1.11361 0.91957 0.90317 0.91992 0.74982 0.82921 0.82998 0.90374 0.91465 0.92094 0.92046 0.92814 0.93127 0.92608 0.93486 0.86279 0.80906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.85 0.64 1.22 16 2 N -0.72 -6.53 5.70 -67.89 -0.39 -6.91 16 3 C 0.57 6.88 7.82 -12.11 -0.09 6.79 16 4 O -0.53 -7.62 16.31 5.37 0.09 -7.54 16 5 C 0.08 0.99 6.75 -82.94 -0.56 0.43 16 6 C -0.12 -1.30 9.62 -39.11 -0.38 -1.67 16 7 C -0.06 -0.66 7.45 -38.89 -0.29 -0.95 16 8 C -0.14 -2.01 5.21 -104.72 -0.55 -2.55 16 9 C 0.55 10.29 7.32 -12.26 -0.09 10.20 16 10 O -0.52 -12.04 16.43 5.34 0.09 -11.95 16 11 N -0.59 -11.06 2.97 -173.56 -0.51 -11.57 16 12 C 0.09 1.34 5.23 -3.72 -0.02 1.32 16 13 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 14 C -0.11 -2.10 5.11 -26.69 -0.14 -2.24 16 15 C 0.04 0.96 2.20 -91.42 -0.20 0.76 16 16 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 17 C -0.52 -13.66 8.49 -34.44 -0.29 -13.95 16 18 H 0.06 1.51 7.75 -52.49 -0.41 1.11 16 19 C 0.06 1.71 5.36 -17.82 -0.10 1.61 16 20 N -0.88 -24.93 11.64 55.43 0.65 -24.28 16 21 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 25 C 0.11 2.60 5.49 -3.49 -0.02 2.58 16 26 C 0.15 2.01 10.86 -17.17 -0.19 1.82 16 27 N -0.46 -5.74 9.52 -9.48 -0.09 -5.83 16 28 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.41 3.26 8.15 -40.82 -0.33 2.93 16 32 H 0.15 1.49 7.63 -52.48 -0.40 1.09 16 33 H 0.15 1.48 6.59 -52.49 -0.35 1.14 16 34 H 0.08 0.94 4.19 -51.93 -0.22 0.72 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.12 3.21 5.41 -51.93 -0.28 2.93 16 43 H 0.17 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -32.01 354.62 -8.05 -40.06 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.77 Total: 3.77 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.43 Total: 3.17 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.35 Total: -48.60 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.18 Total: -19.49 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.01 -8.05 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.324 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds