Wall clock time and date at job start Tue Mar 31 2020 11:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34771 * 120.00380 * 2 1 4 4 O 1.21490 * 119.99852 * 359.97438 * 3 2 1 5 5 C 1.48335 * 120.00392 * 180.02562 * 3 2 1 6 6 C 1.39295 * 119.57549 * 179.97438 * 5 3 2 7 7 C 1.38448 * 119.19314 * 180.25423 * 6 5 3 8 8 C 1.39867 * 118.35694 * 359.50525 * 7 6 5 9 9 C 1.48005 * 120.46461 * 180.24317 * 8 7 6 10 10 O 1.21534 * 119.99520 * 134.67919 * 9 8 7 11 11 N 1.34775 * 120.00091 * 314.68793 * 9 8 7 12 12 C 1.46920 * 120.62890 * 4.16878 * 11 9 8 13 13 C 1.53189 * 108.77710 * 233.58714 * 12 11 9 14 14 C 1.53041 * 109.31642 * 305.37020 * 13 12 11 15 15 C 1.53044 * 109.53684 * 61.36123 * 14 13 12 16 16 H 1.08994 * 109.49900 * 58.58874 * 15 14 13 17 17 C 1.50701 * 109.49789 * 178.65588 * 15 14 13 18 18 H 1.07999 * 119.99732 * 5.36483 * 17 15 14 19 19 C 1.37874 * 120.00245 * 185.36406 * 17 15 14 20 20 N 1.31519 * 119.99848 * 355.30899 * 19 17 15 21 21 Si 1.86798 * 120.00357 * 175.30834 * 19 17 15 22 22 H 1.48500 * 109.47114 * 94.99876 * 21 19 17 23 23 H 1.48503 * 109.47106 * 215.00318 * 21 19 17 24 24 H 1.48504 * 109.47047 * 334.99816 * 21 19 17 25 25 C 1.46923 * 120.62954 * 183.89458 * 11 9 8 26 26 C 1.39736 * 119.07411 * 0.47183 * 8 7 6 27 27 N 1.31415 * 120.71557 * 359.77474 * 26 8 7 28 28 H 1.09008 * 109.47158 * 59.99942 * 1 2 3 29 29 H 1.08996 * 109.47453 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47416 * 300.00059 * 1 2 3 31 31 H 0.97005 * 119.99469 * 179.97438 * 2 1 3 32 32 H 1.08007 * 120.40358 * 359.97153 * 6 5 3 33 33 H 1.08001 * 120.82073 * 179.72754 * 7 6 5 34 34 H 1.08998 * 109.58869 * 353.37524 * 12 11 9 35 35 H 1.08999 * 109.58210 * 113.66224 * 12 11 9 36 36 H 1.09002 * 109.49673 * 65.31919 * 13 12 11 37 37 H 1.09001 * 109.50038 * 185.41745 * 13 12 11 38 38 H 1.08999 * 109.46590 * 181.38112 * 14 13 12 39 39 H 1.08999 * 109.45746 * 301.34643 * 14 13 12 40 40 H 0.97000 * 119.99875 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.58908 * 246.20281 * 25 11 9 42 42 H 1.09000 * 109.58803 * 6.62405 * 25 11 9 43 43 H 1.07999 * 119.64100 * 179.74807 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5315 2.2193 -0.0005 5 6 3.6223 1.1671 -0.0006 6 6 4.3098 2.3786 -0.0011 7 6 5.6942 2.3693 -0.0070 8 6 6.3503 1.1341 -0.0016 9 6 7.8290 1.0699 -0.0021 10 8 8.4043 0.3076 0.7496 11 7 8.5374 1.8568 -0.8360 12 6 7.8618 2.8476 -1.6847 13 6 8.2869 2.6227 -3.1392 14 6 9.8142 2.6536 -3.2308 15 6 10.4011 1.5276 -2.3764 16 1 10.0159 0.5690 -2.7236 17 6 11.9035 1.5382 -2.4934 18 1 12.3967 2.3256 -3.0441 19 6 12.6485 0.5429 -1.8974 20 7 12.0568 -0.3634 -1.1502 21 14 14.4981 0.4814 -2.1511 22 1 15.1754 1.1733 -1.0251 23 1 14.9440 -0.9342 -2.2024 24 1 14.8454 1.1563 -3.4275 25 6 10.0005 1.7441 -0.9092 26 6 5.5903 -0.0385 -0.0006 27 7 4.2772 0.0128 -0.0002 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.9499 -0.8401 0.0004 32 1 3.7694 3.3137 -0.0016 33 1 6.2537 3.2931 -0.0120 34 1 6.7820 2.7283 -1.5970 35 1 8.1453 3.8520 -1.3702 36 1 7.9216 1.6537 -3.4793 37 1 7.8688 3.4102 -3.7663 38 1 10.1187 2.5183 -4.2686 39 1 10.1804 3.6138 -2.8673 40 1 12.5808 -1.0639 -0.7312 41 1 10.4568 2.6602 -0.5342 42 1 10.3322 0.8964 -0.3096 43 1 6.0875 -0.9972 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:08 Heat of formation + Delta-G solvation = -53.233899 kcal Electronic energy + Delta-G solvation = -26252.737217 eV Core-core repulsion = 22489.968758 eV Total energy + Delta-G solvation = -3762.768459 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.12786 -40.95669 -39.78392 -38.35903 -35.82437 -35.45751 -34.10758 -33.24688 -32.73072 -31.49080 -28.55941 -27.12118 -26.70094 -25.17668 -24.70254 -23.43392 -22.12290 -21.61487 -20.26688 -19.52444 -18.75730 -18.12324 -17.85715 -17.16647 -16.66222 -16.54726 -16.47096 -16.15705 -15.79318 -15.50271 -15.28289 -14.95158 -14.81875 -14.56795 -14.39671 -14.29100 -13.93328 -13.77983 -13.65093 -13.43587 -13.08632 -12.91390 -12.69639 -12.33894 -12.24494 -11.90106 -11.65980 -11.60685 -11.32327 -11.06459 -10.98686 -10.88446 -10.62119 -10.51955 -10.44549 -10.14148 -9.48949 -8.12471 -6.27624 -0.80712 -0.01218 1.30917 1.40717 1.42281 1.52832 1.73289 2.00565 2.10010 2.42386 2.65391 2.92535 3.17187 3.35813 3.60893 3.64518 3.82113 3.98612 4.03398 4.14649 4.32919 4.43795 4.56535 4.57625 4.63422 4.68991 4.75474 4.76359 4.81672 4.83706 4.94601 5.08550 5.20798 5.24455 5.27693 5.31612 5.35153 5.51309 5.60165 5.88642 5.96376 6.22785 6.32208 6.49860 6.56749 6.85394 7.02509 7.12561 7.42602 8.92126 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028681 B = 0.002811 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.015465 B = 9957.813637 C =10436.418377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.707 5.707 3 C 0.570 3.430 4 O -0.558 6.558 5 C 0.078 3.922 6 C -0.106 4.106 7 C -0.041 4.041 8 C -0.152 4.152 9 C 0.545 3.455 10 O -0.579 6.579 11 N -0.596 5.596 12 C 0.089 3.911 13 C -0.128 4.128 14 C -0.106 4.106 15 C 0.039 3.961 16 H -0.010 1.010 17 C -0.534 4.534 18 H 0.062 0.938 19 C 0.011 3.989 20 N -0.915 5.915 21 Si 0.955 3.045 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.263 1.263 25 C 0.127 3.873 26 C 0.143 3.857 27 N -0.457 5.457 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.059 0.941 31 H 0.421 0.579 32 H 0.175 0.825 33 H 0.179 0.821 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.260 0.740 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.947 5.270 -0.070 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.358 5.358 3 C 0.354 3.646 4 O -0.437 6.437 5 C -0.060 4.060 6 C -0.127 4.127 7 C -0.067 4.067 8 C -0.158 4.158 9 C 0.333 3.667 10 O -0.460 6.460 11 N -0.326 5.326 12 C -0.033 4.033 13 C -0.166 4.166 14 C -0.144 4.144 15 C 0.020 3.980 16 H 0.008 0.992 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.553 5.553 21 Si 0.781 3.219 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.187 1.187 25 C 0.005 3.995 26 C -0.017 4.017 27 N -0.168 5.168 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.077 0.923 31 H 0.257 0.743 32 H 0.193 0.807 33 H 0.196 0.804 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -21.595 4.689 0.401 22.102 hybrid contribution 2.248 -0.346 0.095 2.277 sum -19.347 4.342 0.497 19.834 Atomic orbital electron populations 1.21822 0.77452 1.04703 1.02211 1.45718 1.08947 1.08662 1.72425 1.17949 0.85638 0.84438 0.76557 1.90770 1.69170 1.32209 1.51547 1.21467 0.94518 0.90353 0.99681 1.22243 0.93690 0.99975 0.96744 1.22137 0.94285 0.97720 0.92514 1.21096 0.93287 0.97014 1.04373 1.18643 0.87176 0.80309 0.80577 1.90798 1.72270 1.40935 1.42004 1.48463 1.08453 1.36551 1.39144 1.22473 0.98355 0.92148 0.90274 1.21920 0.96022 1.02411 0.96199 1.21532 0.94827 0.98636 0.99371 1.18993 0.94407 0.93666 0.90983 0.99176 1.21506 0.92427 1.10064 1.33275 0.91943 1.25870 1.03040 0.95374 0.94608 1.70092 1.37178 1.15951 1.32117 0.85584 0.80387 0.77146 0.78799 1.20252 1.21366 1.18699 1.21900 0.76025 1.00664 1.00905 1.22836 0.88330 0.98171 0.92405 1.67581 1.09380 1.28392 1.11492 0.92179 0.87094 0.92262 0.74262 0.80735 0.80395 0.87390 0.88680 0.93383 0.87692 0.93020 0.92066 0.93111 0.93555 0.90947 0.81440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.70 127.77 1.37 2.26 16 2 N -0.71 -11.37 5.70 -487.01 -2.78 -14.14 16 3 C 0.57 12.45 7.82 86.93 0.68 13.13 16 4 O -0.56 -14.80 16.31 -3.68 -0.06 -14.86 16 5 C 0.08 1.73 6.75 41.95 0.28 2.01 16 6 C -0.11 -2.03 9.62 22.57 0.22 -1.81 16 7 C -0.04 -0.83 7.45 22.71 0.17 -0.66 16 8 C -0.15 -4.28 5.21 -19.93 -0.10 -4.38 16 9 C 0.55 20.95 7.32 86.83 0.64 21.59 16 10 O -0.58 -28.30 16.43 -3.82 -0.06 -28.36 16 11 N -0.60 -22.19 2.97 -821.32 -2.44 -24.63 16 12 C 0.09 2.27 5.23 86.36 0.45 2.72 16 13 C -0.13 -3.51 6.08 30.67 0.19 -3.33 16 14 C -0.11 -3.86 5.11 30.62 0.16 -3.70 16 15 C 0.04 1.88 2.20 -11.31 -0.02 1.85 16 16 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 17 C -0.53 -28.58 8.49 25.60 0.22 -28.36 16 18 H 0.06 3.21 7.75 -2.91 -0.02 3.19 16 19 C 0.01 0.59 5.36 84.65 0.45 1.05 16 20 N -0.91 -54.51 11.64 21.45 0.25 -54.26 16 21 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 25 C 0.13 6.01 5.49 86.51 0.47 6.49 16 26 C 0.14 3.84 10.86 85.12 0.92 4.77 16 27 N -0.46 -10.77 9.52 -183.90 -1.75 -12.52 16 28 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.42 5.75 8.15 -92.70 -0.76 5.00 16 32 H 0.18 2.67 7.63 -2.91 -0.02 2.65 16 33 H 0.18 2.68 6.59 -2.91 -0.02 2.66 16 34 H 0.11 2.16 4.19 -2.39 -0.01 2.15 16 35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 41 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.07 4.16 5.41 -2.39 -0.01 4.15 16 43 H 0.17 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -74.55 354.62 1.57 -72.98 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.29 Total: 16.65 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.09 Total: 13.62 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -6.71 Total: -105.56 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -0.12 Total: -43.22 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -74.55 1.57 -72.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.751 kcal (2) G-P(sol) polarization free energy of solvation -74.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds