Wall clock time and date at job start Tue Mar 31 2020 11:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35983 * 117.00263 * 2 1 4 4 C 1.40155 * 125.83837 * 179.97438 * 3 2 1 5 5 C 1.36132 * 107.80892 * 180.02562 * 4 3 2 6 6 N 1.39183 * 126.22111 * 179.97438 * 5 4 3 7 7 C 1.46496 * 120.00549 * 359.97438 * 6 5 4 8 8 C 1.50697 * 109.47604 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02325 * 8 7 6 10 10 C 1.38250 * 120.10833 * 180.02562 * 9 8 7 11 11 C 1.38159 * 120.05742 * 359.68104 * 10 9 8 12 12 C 1.38710 * 119.94311 * 0.57011 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.72143 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.38129 * 119.97079 * 89.99933 * 8 7 6 25 25 N 1.35811 * 107.55467 * 0.24228 * 5 4 3 26 26 H 0.96993 * 126.04104 * 179.74110 * 25 5 4 27 27 N 1.31108 * 125.83447 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47210 * 59.99275 * 1 2 3 29 29 H 1.08997 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46752 * 299.99716 * 1 2 3 31 31 H 1.07995 * 126.09937 * 0.03880 * 4 3 2 32 32 H 0.97006 * 119.99790 * 179.97438 * 6 5 4 33 33 H 1.09005 * 109.46956 * 59.99680 * 7 6 5 34 34 H 1.09002 * 109.47163 * 300.00257 * 7 6 5 35 35 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 36 36 H 1.08006 * 119.97154 * 179.97438 * 10 9 8 37 37 H 1.08006 * 120.03137 * 180.29323 * 11 10 9 38 38 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 39 39 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 40 40 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 41 41 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 42 42 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 43 43 H 1.07999 * 120.02419 * 359.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4313 1.4269 0.0005 5 6 3.6436 2.7715 0.0009 6 7 4.8810 3.4088 0.0020 7 6 6.1131 2.6163 0.0033 8 6 7.3042 3.5395 0.0037 9 6 7.8508 3.9623 -1.1941 10 6 8.9439 4.8088 -1.1971 11 6 9.4887 5.2396 -0.0028 12 6 8.9455 4.8127 1.2000 13 8 9.4832 5.2306 2.3761 14 6 10.6112 6.1046 2.2996 15 6 11.0737 6.4653 3.7126 16 6 12.2629 7.3874 3.6320 17 1 12.6498 7.6867 2.6691 18 6 12.8563 7.8500 4.7874 19 7 12.3848 7.4859 5.9599 20 14 14.3308 8.9925 4.6874 21 1 14.6633 9.2478 3.2628 22 1 14.0076 10.2776 5.3578 23 1 15.4930 8.3609 5.3620 24 6 7.8487 3.9629 1.2004 25 7 2.4285 3.3781 0.0061 26 1 2.2682 4.3347 0.0111 27 7 1.4478 2.3781 0.0005 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.1941 0.6624 0.0004 32 1 4.9275 4.3777 0.0018 33 1 6.1416 1.9874 -0.8865 34 1 6.1399 1.9878 0.8935 35 1 7.4232 3.6308 -2.1288 36 1 9.3693 5.1374 -2.1339 37 1 10.3397 5.9047 -0.0057 38 1 11.4216 5.6061 1.7677 39 1 10.3313 7.0131 1.7663 40 1 10.2631 6.9639 4.2441 41 1 11.3534 5.5570 4.2464 42 1 12.8020 7.8116 6.7728 43 1 7.4209 3.6330 2.1355 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598988321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:26 Heat of formation + Delta-G solvation = 23.247255 kcal Electronic energy + Delta-G solvation = -24301.544496 eV Core-core repulsion = 20542.092510 eV Total energy + Delta-G solvation = -3759.451987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.41536 -39.99860 -38.49293 -37.69555 -35.68713 -33.44526 -31.81016 -30.99796 -30.80252 -29.35306 -28.72644 -27.44985 -26.03797 -24.95451 -22.55479 -21.96001 -21.69724 -20.74867 -20.25622 -18.99018 -17.65612 -16.93880 -16.36325 -16.27223 -15.88369 -15.75930 -15.75155 -15.42628 -15.35436 -14.76311 -14.52916 -14.28104 -14.05919 -13.47754 -13.39090 -13.00453 -12.80714 -12.69585 -12.37849 -12.23156 -11.70140 -11.60999 -11.52923 -11.39113 -10.96085 -10.81278 -10.71657 -10.56610 -10.34633 -9.96322 -9.72979 -9.35034 -8.99496 -8.85168 -8.50909 -8.02466 -7.92668 -6.15847 -4.20886 1.11675 1.48638 1.86636 2.25612 2.75092 2.80512 3.22639 3.29818 3.33023 3.60564 3.67150 3.89279 4.34716 4.47617 4.64215 4.81154 4.98854 5.00317 5.04013 5.13795 5.20797 5.23914 5.25249 5.28618 5.31175 5.49628 5.55660 5.66057 5.93347 5.94120 5.96444 5.99496 6.34659 6.39067 6.42383 6.48270 6.60870 6.77763 6.80121 7.18995 7.42712 7.45433 7.56619 7.61998 7.73187 7.95378 8.17120 8.84859 9.43923 10.95660 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026537 B = 0.001803 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.886425 B =15524.497625 C =16167.254485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.293 6.293 3 C 0.292 3.708 4 C -0.348 4.348 5 C 0.395 3.605 6 N -0.723 5.723 7 C 0.184 3.816 8 C -0.079 4.079 9 C -0.151 4.151 10 C -0.082 4.082 11 C -0.202 4.202 12 C 0.144 3.856 13 O -0.314 6.314 14 C 0.065 3.935 15 C 0.025 3.975 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.888 5.888 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.140 4.140 25 N -0.495 5.495 26 H 0.438 0.562 27 N -0.359 5.359 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.150 0.850 32 H 0.405 0.595 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.411 -10.949 -15.711 26.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.197 6.197 3 C 0.087 3.913 4 C -0.382 4.382 5 C 0.168 3.832 6 N -0.361 5.361 7 C 0.060 3.940 8 C -0.080 4.080 9 C -0.169 4.169 10 C -0.100 4.100 11 C -0.221 4.221 12 C 0.097 3.903 13 O -0.227 6.227 14 C -0.009 4.009 15 C -0.012 4.012 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.526 5.526 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.160 4.160 25 N -0.215 5.215 26 H 0.282 0.718 27 N -0.200 5.200 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.240 0.760 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.329 -10.940 -15.302 26.971 hybrid contribution 1.528 1.429 -0.093 2.095 sum -17.801 -9.511 -15.396 25.384 Atomic orbital electron populations 1.22943 0.77815 1.03331 1.02085 1.86281 1.21960 1.21985 1.89424 1.20135 0.91119 0.84978 0.95094 1.19723 0.93835 0.93177 1.31443 1.17896 0.80986 0.90132 0.94204 1.44041 1.00464 1.08570 1.83023 1.20175 0.79219 0.91824 1.02766 1.19416 0.96771 0.98942 0.92853 1.20849 0.98167 1.00808 0.97126 1.20919 0.95372 0.96272 0.97451 1.21490 1.03466 1.04849 0.92257 1.19191 0.92433 0.92806 0.85906 1.86193 1.46874 1.62819 1.26834 1.23364 0.83895 0.90186 1.03476 1.19135 0.96441 0.97436 0.88235 1.20998 1.13664 1.29046 0.92900 0.92299 1.24995 0.97485 0.96440 0.95255 1.69986 1.40917 1.44343 0.97397 0.86425 0.82251 0.80438 0.78241 1.19638 1.20821 1.20792 1.20355 0.96805 1.00442 0.98367 1.45633 1.01128 1.08247 1.66486 0.71754 1.77399 1.11163 0.94765 1.36649 0.92586 0.88396 0.92523 0.83214 0.75980 0.90645 0.90583 0.86134 0.85895 0.85012 0.93011 0.93079 0.95387 0.95332 0.92709 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.69 101.05 1.08 1.33 16 2 O -0.29 -3.24 10.58 -19.69 -0.21 -3.44 16 3 C 0.29 3.50 7.88 -17.14 -0.14 3.37 16 4 C -0.35 -3.82 10.13 -39.62 -0.40 -4.22 16 5 C 0.40 3.83 8.15 -152.94 -1.25 2.58 16 6 N -0.72 -5.84 5.73 -61.51 -0.35 -6.19 16 7 C 0.18 1.51 5.66 -5.20 -0.03 1.48 16 8 C -0.08 -0.81 5.25 -104.65 -0.55 -1.36 16 9 C -0.15 -1.50 9.70 -39.56 -0.38 -1.88 16 10 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 11 C -0.20 -2.80 9.04 -39.44 -0.36 -3.16 16 12 C 0.14 2.26 6.69 -39.22 -0.26 2.00 16 13 O -0.31 -6.07 10.14 -19.43 -0.20 -6.27 16 14 C 0.06 1.32 4.68 37.16 0.17 1.49 16 15 C 0.02 0.63 5.34 -27.89 -0.15 0.48 16 16 C -0.53 -14.40 9.11 -34.44 -0.31 -14.71 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 20 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.14 -1.83 9.64 -39.43 -0.38 -2.21 16 25 N -0.50 -4.69 7.39 31.19 0.23 -4.46 16 26 H 0.44 2.86 8.96 -182.63 -1.64 1.23 16 27 N -0.36 -4.22 12.08 30.53 0.37 -3.85 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.15 1.47 7.83 -52.49 -0.41 1.06 16 32 H 0.40 2.90 8.59 -40.82 -0.35 2.55 16 33 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 37 H 0.13 1.83 6.30 -52.48 -0.33 1.50 16 38 H 0.05 1.00 7.67 -51.93 -0.40 0.60 16 39 H 0.05 0.99 7.65 -51.93 -0.40 0.59 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 371.62 15.07 5.60 5.60 Total: -1.00 -31.92 371.62 -9.58 -41.49 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.29 Total: 1.07 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -3.45 Total: -14.52 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.98 Total: -39.79 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.41 Total: -9.71 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.92 -9.58 -41.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598988321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.741 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds