Wall clock time and date at job start Tue Mar 31 2020 11:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35983 * 117.00263 * 2 1 4 4 C 1.40155 * 125.83837 * 179.97438 * 3 2 1 5 5 C 1.36132 * 107.80892 * 180.02562 * 4 3 2 6 6 N 1.39183 * 126.22111 * 179.97438 * 5 4 3 7 7 C 1.46496 * 120.00549 * 359.97438 * 6 5 4 8 8 C 1.50697 * 109.47604 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02325 * 8 7 6 10 10 C 1.38250 * 120.10833 * 180.02562 * 9 8 7 11 11 C 1.38159 * 120.05742 * 359.68104 * 10 9 8 12 12 C 1.38710 * 119.94311 * 0.57011 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.72143 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.38129 * 119.97079 * 89.99933 * 8 7 6 25 25 N 1.35811 * 107.55467 * 0.24228 * 5 4 3 26 26 H 0.96993 * 126.04104 * 179.74110 * 25 5 4 27 27 N 1.31108 * 125.83447 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47210 * 59.99275 * 1 2 3 29 29 H 1.08997 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46752 * 299.99716 * 1 2 3 31 31 H 1.07995 * 126.09937 * 0.03880 * 4 3 2 32 32 H 0.97006 * 119.99790 * 179.97438 * 6 5 4 33 33 H 1.09005 * 109.46956 * 59.99680 * 7 6 5 34 34 H 1.09002 * 109.47163 * 300.00257 * 7 6 5 35 35 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 36 36 H 1.08006 * 119.97154 * 179.97438 * 10 9 8 37 37 H 1.08006 * 120.03137 * 180.29323 * 11 10 9 38 38 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 39 39 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 40 40 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 41 41 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 42 42 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 43 43 H 1.07999 * 120.02419 * 359.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4313 1.4269 0.0005 5 6 3.6436 2.7715 0.0009 6 7 4.8810 3.4088 0.0020 7 6 6.1131 2.6163 0.0033 8 6 7.3042 3.5395 0.0037 9 6 7.8508 3.9623 -1.1941 10 6 8.9439 4.8088 -1.1971 11 6 9.4887 5.2396 -0.0028 12 6 8.9455 4.8127 1.2000 13 8 9.4832 5.2306 2.3761 14 6 10.6112 6.1046 2.2996 15 6 11.0737 6.4653 3.7126 16 6 12.2629 7.3874 3.6320 17 1 12.6498 7.6867 2.6691 18 6 12.8563 7.8500 4.7874 19 7 12.3848 7.4859 5.9599 20 14 14.3308 8.9925 4.6874 21 1 14.6633 9.2478 3.2628 22 1 14.0076 10.2776 5.3578 23 1 15.4930 8.3609 5.3620 24 6 7.8487 3.9629 1.2004 25 7 2.4285 3.3781 0.0061 26 1 2.2682 4.3347 0.0111 27 7 1.4478 2.3781 0.0005 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.1941 0.6624 0.0004 32 1 4.9275 4.3777 0.0018 33 1 6.1416 1.9874 -0.8865 34 1 6.1399 1.9878 0.8935 35 1 7.4232 3.6308 -2.1288 36 1 9.3693 5.1374 -2.1339 37 1 10.3397 5.9047 -0.0057 38 1 11.4216 5.6061 1.7677 39 1 10.3313 7.0131 1.7663 40 1 10.2631 6.9639 4.2441 41 1 11.3534 5.5570 4.2464 42 1 12.8020 7.8116 6.7728 43 1 7.4209 3.6330 2.1355 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598988321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:25 Heat of formation + Delta-G solvation = 1.414733 kcal Electronic energy + Delta-G solvation = -24302.491226 eV Core-core repulsion = 20542.092510 eV Total energy + Delta-G solvation = -3760.398716 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.18813 -41.11063 -39.28928 -38.80421 -36.52178 -35.46056 -32.69401 -32.56132 -31.68407 -30.66797 -29.54836 -28.08576 -27.19664 -26.49931 -23.67489 -23.34404 -22.49968 -21.88165 -21.22563 -19.81964 -19.00298 -18.12269 -17.68435 -17.09855 -16.95734 -16.94916 -16.85356 -16.47716 -16.40358 -16.14520 -15.51872 -15.09686 -14.86765 -14.48840 -14.35435 -14.31263 -14.23648 -13.83713 -13.76157 -13.08366 -13.00188 -12.81545 -12.64829 -12.57789 -12.44147 -12.35073 -11.92138 -11.61634 -11.57357 -11.53588 -11.37168 -11.07148 -10.63870 -9.92906 -9.62543 -9.13441 -8.67437 -8.27875 -6.41563 0.18996 0.50543 1.08336 1.40834 1.41435 1.52482 1.54884 1.93423 2.08884 2.26074 2.50121 2.77093 3.06907 3.12114 3.64696 3.88603 3.90172 4.13689 4.21754 4.26333 4.33455 4.37487 4.42372 4.45346 4.51876 4.54141 4.63386 4.70555 4.73326 4.81116 4.84603 5.07214 5.21512 5.30923 5.40692 5.45885 5.50750 5.57019 5.66897 5.71605 5.87823 6.06319 6.08158 6.45361 6.55495 6.73776 6.79118 6.85272 7.28935 8.85323 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026537 B = 0.001803 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.886425 B =15524.497625 C =16167.254485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.307 6.307 3 C 0.275 3.725 4 C -0.366 4.366 5 C 0.402 3.598 6 N -0.714 5.714 7 C 0.187 3.813 8 C -0.066 4.066 9 C -0.134 4.134 10 C -0.080 4.080 11 C -0.213 4.213 12 C 0.103 3.897 13 O -0.342 6.342 14 C 0.086 3.914 15 C 0.027 3.973 16 C -0.546 4.546 17 H 0.071 0.929 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.976 3.024 21 H -0.257 1.257 22 H -0.278 1.278 23 H -0.277 1.277 24 C -0.147 4.147 25 N -0.489 5.489 26 H 0.449 0.551 27 N -0.379 5.379 28 H 0.056 0.944 29 H 0.125 0.875 30 H 0.053 0.947 31 H 0.158 0.842 32 H 0.411 0.589 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.126 0.874 38 H 0.060 0.940 39 H 0.060 0.940 40 H -0.002 1.002 41 H -0.002 1.002 42 H 0.266 0.734 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.422 -10.963 -18.428 28.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.211 6.211 3 C 0.071 3.929 4 C -0.400 4.400 5 C 0.174 3.826 6 N -0.352 5.352 7 C 0.063 3.937 8 C -0.067 4.067 9 C -0.152 4.152 10 C -0.097 4.097 11 C -0.232 4.232 12 C 0.058 3.942 13 O -0.257 6.257 14 C 0.011 3.989 15 C -0.011 4.011 16 C -0.584 4.584 17 H 0.090 0.910 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.799 3.201 21 H -0.180 1.180 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.166 4.166 25 N -0.211 5.211 26 H 0.296 0.704 27 N -0.220 5.220 28 H 0.074 0.926 29 H 0.143 0.857 30 H 0.072 0.928 31 H 0.176 0.824 32 H 0.247 0.753 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.144 0.856 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.075 0.925 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.359 -10.951 -18.046 28.642 hybrid contribution 1.396 1.342 0.677 2.051 sum -17.963 -9.609 -17.368 26.771 Atomic orbital electron populations 1.23155 0.76261 1.05141 1.01934 1.86256 1.23624 1.21870 1.89397 1.20419 0.91764 0.85286 0.95440 1.19947 0.93817 0.93997 1.32236 1.17863 0.81366 0.89906 0.93492 1.43964 0.99868 1.08852 1.82530 1.20208 0.78195 0.91358 1.03903 1.19555 0.96897 0.98270 0.91945 1.21266 0.96909 0.98898 0.98160 1.21260 0.95335 0.95758 0.97387 1.21577 1.03677 1.05216 0.92697 1.19523 0.94228 0.95194 0.85301 1.86092 1.46795 1.63374 1.29411 1.22842 0.84984 0.91177 0.99865 1.18976 0.95451 0.95664 0.90976 1.21438 1.14128 1.29197 0.93607 0.91044 1.26039 1.00768 0.98147 0.94748 1.70129 1.42710 1.45841 0.98319 0.85237 0.77961 0.77893 0.78972 1.18046 1.20318 1.20300 1.20481 0.96334 1.00264 0.99562 1.45636 1.00789 1.08640 1.66040 0.70400 1.77335 1.12126 0.95204 1.37366 0.92558 0.85654 0.92813 0.82432 0.75266 0.88578 0.90521 0.82769 0.83054 0.85580 0.92152 0.92140 0.98366 0.98348 0.92471 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.69 113.37 1.21 1.64 16 2 O -0.31 -6.62 10.58 -93.35 -0.99 -7.61 16 3 C 0.28 6.42 7.88 85.27 0.67 7.09 16 4 C -0.37 -7.54 10.13 22.24 0.23 -7.32 16 5 C 0.40 7.05 8.15 131.25 1.07 8.12 16 6 N -0.71 -9.72 5.73 -348.50 -2.00 -11.72 16 7 C 0.19 2.51 5.66 85.63 0.48 3.00 16 8 C -0.07 -1.18 5.25 -19.88 -0.10 -1.28 16 9 C -0.13 -2.12 9.70 22.28 0.22 -1.91 16 10 C -0.08 -1.52 10.04 22.25 0.22 -1.30 16 11 C -0.21 -5.69 9.04 22.36 0.20 -5.49 16 12 C 0.10 3.25 6.69 22.50 0.15 3.40 16 13 O -0.34 -13.83 10.14 -92.43 -0.94 -14.77 16 14 C 0.09 3.62 4.68 71.98 0.34 3.95 16 15 C 0.03 1.43 5.34 29.85 0.16 1.59 16 16 C -0.55 -30.35 9.11 25.60 0.23 -30.11 16 17 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 18 C 0.00 0.09 5.46 84.65 0.46 0.55 16 19 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 20 Si 0.98 42.89 29.54 68.60 2.03 44.92 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 24 C -0.15 -3.75 9.64 22.37 0.22 -3.53 16 25 N -0.49 -8.60 7.39 -55.22 -0.41 -9.01 16 26 H 0.45 5.22 8.96 -213.35 -1.91 3.31 16 27 N -0.38 -8.63 12.08 -170.59 -2.06 -10.69 16 28 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.16 2.84 7.83 -2.91 -0.02 2.82 16 32 H 0.41 4.81 8.59 -92.70 -0.80 4.02 16 33 H 0.10 0.99 8.08 -2.38 -0.02 0.97 16 34 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 35 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.13 3.43 6.30 -2.91 -0.02 3.41 16 38 H 0.06 2.39 7.67 -2.39 -0.02 2.37 16 39 H 0.06 2.39 7.65 -2.39 -0.02 2.37 16 40 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 43 H 0.13 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -71.44 371.62 0.02 -71.42 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -1.66 Total: 14.89 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 5.76 Total: -21.59 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -4.18 Total: -87.27 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -1.92 Total: -22.37 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -71.44 0.02 -71.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598988321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.834 kcal (2) G-P(sol) polarization free energy of solvation -71.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds