Wall clock time and date at job start Tue Mar 31 2020 11:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39838 * 119.99590 * 2 1 4 4 C 1.38917 * 119.99206 * 180.02562 * 3 2 1 5 5 C 1.38026 * 119.99943 * 180.02562 * 4 3 2 6 6 C 1.38930 * 120.00107 * 359.97438 * 5 4 3 7 7 N 1.39894 * 120.00511 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99822 * 33.83647 * 7 6 5 9 9 O 1.21392 * 120.00347 * 5.24188 * 8 7 6 10 10 C 1.49321 * 120.00012 * 185.23217 * 8 7 6 11 11 O 1.21368 * 120.00014 * 5.08541 * 10 8 7 12 12 N 1.34777 * 120.00182 * 185.08146 * 10 8 7 13 13 C 1.46499 * 120.00137 * 184.98961 * 12 10 8 14 14 C 1.53002 * 109.47424 * 184.83022 * 13 12 10 15 15 C 1.50702 * 115.54517 * 304.32960 * 14 13 12 16 16 H 1.08002 * 120.00038 * 95.09914 * 15 14 13 17 17 C 1.37875 * 119.99810 * 274.81646 * 15 14 13 18 18 N 1.31514 * 120.00436 * 355.40244 * 17 15 14 19 19 Si 1.86808 * 119.99929 * 175.40172 * 17 15 14 20 20 H 1.48499 * 109.47239 * 90.00180 * 19 17 15 21 21 H 1.48503 * 109.46915 * 210.00156 * 19 17 15 22 22 H 1.48493 * 109.46813 * 329.99815 * 19 17 15 23 23 C 1.52993 * 117.49894 * 89.99815 * 14 13 12 24 24 C 1.52995 * 117.50120 * 158.65825 * 14 13 12 25 25 C 1.38937 * 119.99391 * 0.25653 * 6 5 4 26 26 C 1.38026 * 119.99527 * 359.49329 * 25 6 5 27 27 H 1.09005 * 109.46745 * 299.99855 * 1 2 3 28 28 H 1.08999 * 109.47450 * 59.99792 * 1 2 3 29 29 H 1.08998 * 109.47175 * 180.02562 * 1 2 3 30 30 H 0.97000 * 119.99813 * 179.97438 * 2 1 3 31 31 H 1.08003 * 120.00466 * 359.97438 * 4 3 2 32 32 H 1.08008 * 120.00188 * 179.97438 * 5 4 3 33 33 H 0.96999 * 119.99778 * 213.84160 * 7 6 5 34 34 H 0.96992 * 120.00168 * 4.98491 * 12 10 8 35 35 H 1.09002 * 109.47187 * 64.82939 * 13 12 10 36 36 H 1.09001 * 109.46998 * 304.83260 * 13 12 10 37 37 H 0.96997 * 120.00664 * 184.99988 * 18 17 15 38 38 H 1.09000 * 117.49980 * 215.00673 * 23 14 13 39 39 H 1.09007 * 117.50102 * 0.02562 * 23 14 13 40 40 H 1.09006 * 117.49854 * 359.97438 * 24 14 13 41 41 H 1.08997 * 117.50332 * 144.97553 * 24 14 13 42 42 H 1.07996 * 119.99921 * 179.73759 * 25 6 5 43 43 H 1.08004 * 119.99676 * 180.25229 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1641 1.2111 0.0000 4 6 3.5533 1.2110 -0.0005 5 6 4.2435 2.4063 0.0000 6 6 3.5489 3.6095 0.0005 7 7 4.2484 4.8210 0.0016 8 6 5.4252 4.9203 -0.6478 9 8 5.8322 3.9895 -1.3122 10 6 6.2282 6.1754 -0.5502 11 8 5.8682 7.0705 0.1862 12 7 7.3529 6.3143 -1.2797 13 6 8.1990 7.4972 -1.1036 14 6 9.3362 7.4679 -2.1266 15 6 10.1915 6.2271 -2.1123 16 1 9.9752 5.4143 -2.7898 17 6 11.2535 6.1320 -1.2382 18 7 11.5760 7.1578 -0.4810 19 14 12.2345 4.5459 -1.1294 20 1 13.3581 4.5913 -2.0992 21 1 12.7734 4.3906 0.2457 22 1 11.3517 3.3952 -1.4480 23 6 9.0875 8.1388 -3.4789 24 6 10.0218 8.7946 -2.4591 25 6 2.1596 3.6095 0.0059 26 6 1.4696 2.4141 0.0002 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.9500 -0.8401 0.0004 31 1 4.0933 0.2757 -0.0005 32 1 5.3236 2.4063 0.0000 33 1 3.8864 5.5896 0.4698 34 1 7.6022 5.6310 -1.9214 35 1 8.6161 7.4989 -0.0965 36 1 7.6010 8.3967 -1.2506 37 1 12.3659 7.1170 0.0804 38 1 9.5423 7.6829 -4.3582 39 1 8.1136 8.6016 -3.6396 40 1 9.6623 9.6886 -1.9493 41 1 11.0914 8.7702 -2.6672 42 1 1.6196 4.5447 0.0106 43 1 0.3895 2.4141 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599879425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:48 Heat of formation + Delta-G solvation = -10.237729 kcal Electronic energy + Delta-G solvation = -25429.886617 eV Core-core repulsion = 21668.982612 eV Total energy + Delta-G solvation = -3760.904005 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75179 -39.39091 -38.16642 -36.72563 -36.11495 -34.10534 -33.21107 -31.98914 -31.08821 -29.14886 -27.13309 -26.07631 -25.39509 -23.60542 -22.91024 -21.40266 -21.08855 -19.85366 -19.51098 -18.29836 -17.73686 -17.17633 -16.34920 -16.13581 -15.76882 -15.40830 -14.76875 -14.66739 -14.55841 -14.43061 -14.14213 -13.89068 -13.76143 -13.40032 -13.10406 -12.79162 -12.71554 -12.67529 -12.35761 -11.93680 -11.64697 -11.42798 -11.17791 -11.00286 -10.95383 -10.77227 -10.52714 -10.24436 -9.62752 -9.41733 -9.25534 -9.09074 -8.98990 -8.57036 -8.41423 -8.14634 -7.30463 -6.09965 -4.20094 1.22253 1.34773 1.91893 2.66669 3.23377 3.26425 3.34455 3.38523 3.51705 3.84209 4.02759 4.35281 4.72373 4.80819 4.87223 4.90093 5.11214 5.17833 5.27419 5.32233 5.33084 5.37729 5.48774 5.86060 5.94828 5.95677 6.11239 6.26565 6.31296 6.40763 6.43407 6.45779 6.66833 6.75118 6.75417 6.98855 7.07744 7.12874 7.22751 7.31275 7.45138 7.49866 7.79795 7.85378 8.13424 8.29902 8.51136 8.82377 9.48126 10.96943 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.002741 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.461418 B =10214.039588 C =11203.587461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.757 5.757 3 C 0.196 3.804 4 C -0.174 4.174 5 C -0.070 4.070 6 C 0.091 3.909 7 N -0.647 5.647 8 C 0.506 3.494 9 O -0.501 6.501 10 C 0.497 3.503 11 O -0.541 6.541 12 N -0.661 5.661 13 C 0.159 3.841 14 C 0.020 3.980 15 C -0.502 4.502 16 H 0.062 0.938 17 C 0.075 3.925 18 N -0.875 5.875 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.271 1.271 23 C -0.210 4.210 24 C -0.140 4.140 25 C -0.094 4.094 26 C -0.179 4.179 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.400 0.600 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.419 0.581 34 H 0.416 0.584 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.262 0.738 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.126 0.874 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.183 -10.045 1.770 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.388 5.388 3 C 0.094 3.906 4 C -0.196 4.196 5 C -0.090 4.090 6 C -0.004 4.004 7 N -0.294 5.294 8 C 0.289 3.711 9 O -0.375 6.375 10 C 0.276 3.724 11 O -0.420 6.420 12 N -0.311 5.311 13 C 0.036 3.964 14 C 0.019 3.981 15 C -0.540 4.540 16 H 0.080 0.920 17 C -0.130 4.130 18 N -0.511 5.511 19 Si 0.717 3.283 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.195 1.195 23 C -0.247 4.247 24 C -0.178 4.178 25 C -0.115 4.115 26 C -0.202 4.202 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.141 0.859 32 H 0.154 0.846 33 H 0.257 0.743 34 H 0.253 0.747 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.144 0.856 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.158 -9.958 2.008 22.573 hybrid contribution 0.785 -1.043 0.069 1.308 sum -19.373 -11.002 2.078 22.376 Atomic orbital electron populations 1.21494 0.80437 1.02141 1.00983 1.44411 1.05485 1.05272 1.83584 1.17840 0.91079 0.86293 0.95373 1.20471 0.91754 0.98283 1.09137 1.20962 1.00810 0.90316 0.96928 1.17533 0.90748 0.85342 1.06783 1.43108 1.20939 1.13039 1.52321 1.20612 0.81898 0.89172 0.79445 1.90775 1.68925 1.39787 1.37983 1.19749 0.83060 0.86932 0.82668 1.90722 1.70290 1.41249 1.39743 1.45872 1.21217 1.25069 1.38919 1.21177 0.89841 0.84086 1.01278 1.19027 0.94496 0.94194 0.90340 1.20363 1.13098 1.00400 1.20093 0.91959 1.24986 0.97031 0.96257 0.94693 1.69982 1.25214 1.29696 1.26161 0.86626 0.80264 0.84078 0.77357 1.20645 1.21167 1.19529 1.23064 0.99383 1.07194 0.95095 1.22466 0.97881 0.95783 1.01666 1.20652 0.91819 0.98248 1.00740 1.20363 0.99347 0.90474 1.09982 0.93105 0.93088 0.91085 0.76666 0.85860 0.84603 0.74335 0.74708 0.90852 0.93314 0.92834 0.90239 0.91621 0.91726 0.89390 0.85584 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 9.94 59.85 0.59 1.09 16 2 N -0.76 -5.72 5.90 -65.34 -0.39 -6.11 16 3 C 0.20 2.02 6.66 -83.70 -0.56 1.46 16 4 C -0.17 -1.99 9.89 -39.41 -0.39 -2.38 16 5 C -0.07 -0.95 8.65 -39.40 -0.34 -1.29 16 6 C 0.09 1.20 6.27 -83.66 -0.52 0.67 16 7 N -0.65 -8.93 5.32 -10.26 -0.05 -8.98 16 8 C 0.51 8.54 7.61 -11.65 -0.09 8.45 16 9 O -0.50 -9.36 14.21 5.46 0.08 -9.29 16 10 C 0.50 9.36 7.88 -11.65 -0.09 9.27 16 11 O -0.54 -10.89 16.48 5.48 0.09 -10.80 16 12 N -0.66 -13.33 5.40 -60.77 -0.33 -13.65 16 13 C 0.16 3.50 5.58 -4.04 -0.02 3.48 16 14 C 0.02 0.47 1.61 -155.66 -0.25 0.22 16 15 C -0.50 -12.90 8.13 -34.44 -0.28 -13.18 16 16 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 17 C 0.07 1.97 5.43 -17.82 -0.10 1.87 16 18 N -0.87 -23.94 12.64 55.43 0.70 -23.24 16 19 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 C -0.21 -4.37 9.93 -26.70 -0.27 -4.64 16 24 C -0.14 -3.15 9.16 -26.70 -0.24 -3.39 16 25 C -0.09 -1.01 9.96 -39.40 -0.39 -1.40 16 26 C -0.18 -1.78 9.30 -39.41 -0.37 -2.14 16 27 H 0.05 0.26 7.95 -51.93 -0.41 -0.15 16 28 H 0.05 0.27 7.95 -51.93 -0.41 -0.14 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.40 2.41 8.84 -40.82 -0.36 2.05 16 31 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.14 2.07 6.44 -52.48 -0.34 1.73 16 33 H 0.42 5.00 8.32 -40.82 -0.34 4.66 16 34 H 0.42 8.39 7.49 -40.82 -0.31 8.09 16 35 H 0.07 1.80 8.14 -51.93 -0.42 1.37 16 36 H 0.05 1.03 8.06 -51.93 -0.42 0.61 16 37 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 38 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 0.96 6.73 -52.48 -0.35 0.61 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -29.94 369.70 -8.54 -38.48 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -5.87 Total: 14.25 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -3.32 Total: -1.91 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.07 Total: -51.98 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.17 Total: -20.09 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.94 -8.54 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599879425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.241 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds