Wall clock time and date at job start Tue Mar 31 2020 11:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39838 * 119.99590 * 2 1 4 4 C 1.38917 * 119.99206 * 180.02562 * 3 2 1 5 5 C 1.38026 * 119.99943 * 180.02562 * 4 3 2 6 6 C 1.38930 * 120.00107 * 359.97438 * 5 4 3 7 7 N 1.39894 * 120.00511 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99822 * 33.83647 * 7 6 5 9 9 O 1.21392 * 120.00347 * 5.24188 * 8 7 6 10 10 C 1.49321 * 120.00012 * 185.23217 * 8 7 6 11 11 O 1.21368 * 120.00014 * 5.08541 * 10 8 7 12 12 N 1.34777 * 120.00182 * 185.08146 * 10 8 7 13 13 C 1.46499 * 120.00137 * 184.98961 * 12 10 8 14 14 C 1.53002 * 109.47424 * 184.83022 * 13 12 10 15 15 C 1.50702 * 115.54517 * 304.32960 * 14 13 12 16 16 H 1.08002 * 120.00038 * 95.09914 * 15 14 13 17 17 C 1.37875 * 119.99810 * 274.81646 * 15 14 13 18 18 N 1.31514 * 120.00436 * 355.40244 * 17 15 14 19 19 Si 1.86808 * 119.99929 * 175.40172 * 17 15 14 20 20 H 1.48499 * 109.47239 * 90.00180 * 19 17 15 21 21 H 1.48503 * 109.46915 * 210.00156 * 19 17 15 22 22 H 1.48493 * 109.46813 * 329.99815 * 19 17 15 23 23 C 1.52993 * 117.49894 * 89.99815 * 14 13 12 24 24 C 1.52995 * 117.50120 * 158.65825 * 14 13 12 25 25 C 1.38937 * 119.99391 * 0.25653 * 6 5 4 26 26 C 1.38026 * 119.99527 * 359.49329 * 25 6 5 27 27 H 1.09005 * 109.46745 * 299.99855 * 1 2 3 28 28 H 1.08999 * 109.47450 * 59.99792 * 1 2 3 29 29 H 1.08998 * 109.47175 * 180.02562 * 1 2 3 30 30 H 0.97000 * 119.99813 * 179.97438 * 2 1 3 31 31 H 1.08003 * 120.00466 * 359.97438 * 4 3 2 32 32 H 1.08008 * 120.00188 * 179.97438 * 5 4 3 33 33 H 0.96999 * 119.99778 * 213.84160 * 7 6 5 34 34 H 0.96992 * 120.00168 * 4.98491 * 12 10 8 35 35 H 1.09002 * 109.47187 * 64.82939 * 13 12 10 36 36 H 1.09001 * 109.46998 * 304.83260 * 13 12 10 37 37 H 0.96997 * 120.00664 * 184.99988 * 18 17 15 38 38 H 1.09000 * 117.49980 * 215.00673 * 23 14 13 39 39 H 1.09007 * 117.50102 * 0.02562 * 23 14 13 40 40 H 1.09006 * 117.49854 * 359.97438 * 24 14 13 41 41 H 1.08997 * 117.50332 * 144.97553 * 24 14 13 42 42 H 1.07996 * 119.99921 * 179.73759 * 25 6 5 43 43 H 1.08004 * 119.99676 * 180.25229 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1641 1.2111 0.0000 4 6 3.5533 1.2110 -0.0005 5 6 4.2435 2.4063 0.0000 6 6 3.5489 3.6095 0.0005 7 7 4.2484 4.8210 0.0016 8 6 5.4252 4.9203 -0.6478 9 8 5.8322 3.9895 -1.3122 10 6 6.2282 6.1754 -0.5502 11 8 5.8682 7.0705 0.1862 12 7 7.3529 6.3143 -1.2797 13 6 8.1990 7.4972 -1.1036 14 6 9.3362 7.4679 -2.1266 15 6 10.1915 6.2271 -2.1123 16 1 9.9752 5.4143 -2.7898 17 6 11.2535 6.1320 -1.2382 18 7 11.5760 7.1578 -0.4810 19 14 12.2345 4.5459 -1.1294 20 1 13.3581 4.5913 -2.0992 21 1 12.7734 4.3906 0.2457 22 1 11.3517 3.3952 -1.4480 23 6 9.0875 8.1388 -3.4789 24 6 10.0218 8.7946 -2.4591 25 6 2.1596 3.6095 0.0059 26 6 1.4696 2.4141 0.0002 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.9500 -0.8401 0.0004 31 1 4.0933 0.2757 -0.0005 32 1 5.3236 2.4063 0.0000 33 1 3.8864 5.5896 0.4698 34 1 7.6022 5.6310 -1.9214 35 1 8.6161 7.4989 -0.0965 36 1 7.6010 8.3967 -1.2506 37 1 12.3659 7.1170 0.0804 38 1 9.5423 7.6829 -4.3582 39 1 8.1136 8.6016 -3.6396 40 1 9.6623 9.6886 -1.9493 41 1 11.0914 8.7702 -2.6672 42 1 1.6196 4.5447 0.0106 43 1 0.3895 2.4141 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599879425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:47 Heat of formation + Delta-G solvation = -30.409601 kcal Electronic energy + Delta-G solvation = -25430.761335 eV Core-core repulsion = 21668.982612 eV Total energy + Delta-G solvation = -3761.778723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.01277 -40.52789 -39.46534 -38.46819 -37.06992 -35.30948 -34.58622 -33.97601 -31.93899 -30.05058 -28.67064 -27.46885 -26.74225 -24.87463 -23.78248 -22.92906 -22.32838 -21.44475 -21.01910 -19.71816 -18.66445 -18.24348 -17.89453 -17.55151 -17.08957 -16.72319 -16.49551 -16.15377 -15.72965 -15.35313 -15.22424 -15.08935 -14.88451 -14.67644 -14.44958 -14.22287 -13.75383 -13.56909 -13.53990 -13.48024 -12.96724 -12.92512 -12.83750 -12.64224 -12.38435 -12.17135 -12.00308 -11.66884 -11.40986 -10.98693 -10.76094 -10.46251 -10.28147 -10.17047 -9.92207 -9.88822 -8.11395 -8.10554 -6.25026 0.07577 0.47457 0.74801 1.34785 1.39870 1.43950 1.52052 2.12228 2.40963 2.60880 2.71786 2.92718 3.16279 3.39258 3.57836 3.95110 4.05872 4.20340 4.41348 4.43594 4.49637 4.50881 4.62656 4.64343 4.68341 4.73705 4.93090 4.94638 5.00732 5.03268 5.11505 5.26791 5.28286 5.33234 5.41382 5.47739 5.52328 5.69126 5.76615 5.84273 6.04547 6.35167 6.41380 6.45883 6.77264 6.82383 6.85955 6.96469 7.44962 8.95107 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.002741 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.461418 B =10214.039588 C =11203.587461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.751 5.751 3 C 0.202 3.798 4 C -0.186 4.186 5 C -0.088 4.088 6 C 0.058 3.942 7 N -0.627 5.627 8 C 0.510 3.490 9 O -0.525 6.525 10 C 0.500 3.500 11 O -0.553 6.553 12 N -0.666 5.666 13 C 0.173 3.827 14 C -0.005 4.005 15 C -0.507 4.507 16 H 0.058 0.942 17 C 0.030 3.970 18 N -0.902 5.902 19 Si 0.943 3.057 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.270 1.270 23 C -0.182 4.182 24 C -0.145 4.145 25 C -0.083 4.083 26 C -0.180 4.180 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.407 0.593 31 H 0.134 0.866 32 H 0.111 0.889 33 H 0.428 0.572 34 H 0.416 0.584 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.260 0.740 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.151 0.849 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.944 -11.218 1.439 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.381 5.381 3 C 0.097 3.903 4 C -0.209 4.209 5 C -0.109 4.109 6 C -0.036 4.036 7 N -0.274 5.274 8 C 0.292 3.708 9 O -0.401 6.401 10 C 0.280 3.720 11 O -0.433 6.433 12 N -0.315 5.315 13 C 0.050 3.950 14 C -0.005 4.005 15 C -0.545 4.545 16 H 0.076 0.924 17 C -0.171 4.171 18 N -0.540 5.540 19 Si 0.769 3.231 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.194 1.194 23 C -0.219 4.219 24 C -0.183 4.183 25 C -0.104 4.104 26 C -0.203 4.203 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.242 0.758 31 H 0.152 0.848 32 H 0.129 0.871 33 H 0.267 0.733 34 H 0.252 0.748 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.169 0.831 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.976 -11.164 1.686 25.600 hybrid contribution 1.480 -0.779 0.192 1.683 sum -21.496 -11.943 1.878 24.663 Atomic orbital electron populations 1.21708 0.78726 1.03884 1.01326 1.44594 1.06642 1.04707 1.82180 1.17994 0.90776 0.87619 0.93901 1.20578 0.92677 0.97965 1.09662 1.20898 0.99861 0.91699 0.98443 1.17718 0.91783 0.84511 1.09571 1.42951 1.19699 1.13819 1.50965 1.20148 0.82701 0.87950 0.80007 1.90769 1.69731 1.40100 1.39476 1.20071 0.82671 0.87452 0.81758 1.90705 1.70594 1.41993 1.40039 1.45792 1.21583 1.24666 1.39476 1.20844 0.89797 0.85283 0.99099 1.19088 0.95151 0.93778 0.92529 1.20621 1.13181 1.01175 1.19503 0.92377 1.25615 0.98224 0.98544 0.94749 1.70078 1.25685 1.31164 1.27029 0.85783 0.79117 0.81114 0.77068 1.20089 1.21440 1.19433 1.23058 0.99894 1.05185 0.93775 1.22384 0.96992 0.95989 1.02975 1.20916 0.90667 0.99792 0.98984 1.20696 1.00666 0.89899 1.09079 0.92555 0.92785 0.88850 0.75834 0.84807 0.87123 0.73316 0.74760 0.94050 0.92185 0.93072 0.90011 0.89086 0.90550 0.91633 0.83139 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 9.94 127.77 1.27 1.89 16 2 N -0.75 -9.24 5.90 -360.65 -2.13 -11.37 16 3 C 0.20 3.69 6.66 38.19 0.25 3.95 16 4 C -0.19 -4.13 9.89 22.38 0.22 -3.91 16 5 C -0.09 -2.44 8.65 22.39 0.19 -2.25 16 6 C 0.06 1.50 6.27 38.19 0.24 1.74 16 7 N -0.63 -17.07 5.32 -304.72 -1.62 -18.70 16 8 C 0.51 17.38 7.61 87.23 0.66 18.04 16 9 O -0.53 -20.07 14.21 -3.38 -0.05 -20.12 16 10 C 0.50 18.98 7.88 87.23 0.69 19.67 16 11 O -0.55 -22.24 16.48 -3.30 -0.05 -22.30 16 12 N -0.67 -27.11 5.40 -464.53 -2.51 -29.62 16 13 C 0.17 7.70 5.58 86.38 0.48 8.18 16 14 C 0.00 -0.22 1.61 -52.93 -0.09 -0.31 16 15 C -0.51 -26.31 8.13 25.60 0.21 -26.10 16 16 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 17 C 0.03 1.60 5.43 84.65 0.46 2.06 16 18 N -0.90 -50.40 12.64 21.45 0.27 -50.13 16 19 Si 0.94 43.07 29.54 68.60 2.03 45.10 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 C -0.18 -7.33 9.93 30.61 0.30 -7.03 16 24 C -0.15 -6.53 9.16 30.61 0.28 -6.25 16 25 C -0.08 -1.60 9.96 22.39 0.22 -1.38 16 26 C -0.18 -3.06 9.30 22.38 0.21 -2.85 16 27 H 0.06 0.37 7.95 -2.38 -0.02 0.35 16 28 H 0.05 0.38 7.95 -2.39 -0.02 0.36 16 29 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.41 3.87 8.84 -92.71 -0.82 3.05 16 31 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.11 3.57 6.44 -2.91 -0.02 3.55 16 33 H 0.43 9.84 8.32 -92.71 -0.77 9.07 16 34 H 0.42 17.02 7.49 -92.71 -0.69 16.32 16 35 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 2.50 8.06 -2.39 -0.02 2.48 16 37 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 38 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 40 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 41 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.15 1.73 6.73 -2.91 -0.02 1.71 16 Total: -1.00 -64.72 369.70 0.33 -64.39 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -1.22 Total: 37.30 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 5.61 Total: 5.45 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -5.99 Total: -109.81 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.10 Total: -42.42 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -64.72 0.33 -64.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599879425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.978 kcal (2) G-P(sol) polarization free energy of solvation -64.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds