Wall clock time and date at job start Tue Mar 31 2020 11:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99723 * 2 1 4 4 N 1.46505 * 109.46612 * 125.00119 * 3 2 1 5 5 C 1.46498 * 120.00089 * 274.82823 * 4 3 2 6 6 C 1.50701 * 109.47607 * 263.68872 * 5 4 3 7 7 H 1.08000 * 119.99296 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00136 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99837 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99727 * 359.97438 * 8 6 5 11 11 H 1.48493 * 109.47115 * 90.00177 * 10 8 6 12 12 H 1.48502 * 109.46570 * 210.00055 * 10 8 6 13 13 H 1.48499 * 109.47190 * 329.99560 * 10 8 6 14 14 C 1.34776 * 120.00000 * 94.83559 * 4 3 2 15 15 O 1.21369 * 119.99798 * 354.62557 * 14 4 3 16 16 C 1.49326 * 120.00009 * 174.62156 * 14 4 3 17 17 O 1.21389 * 119.99954 * 0.29652 * 16 14 4 18 18 N 1.34779 * 119.99881 * 180.29866 * 16 14 4 19 19 C 1.39888 * 119.99983 * 184.82255 * 18 16 14 20 20 C 1.38930 * 120.00120 * 144.90115 * 19 18 16 21 21 C 1.38025 * 119.99371 * 180.23204 * 20 19 18 22 22 C 1.38921 * 120.00697 * 359.47032 * 21 20 19 23 23 N 1.39831 * 120.00292 * 180.27483 * 22 21 20 24 24 C 1.46493 * 120.00390 * 180.02562 * 23 22 21 25 25 C 1.38919 * 119.99939 * 0.25594 * 22 21 20 26 26 C 1.38030 * 120.00097 * 0.02562 * 25 22 21 27 27 H 1.08005 * 119.99767 * 179.97438 * 1 2 3 28 28 H 1.07993 * 120.00235 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99808 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47339 * 5.00492 * 3 2 1 31 31 H 1.08996 * 109.47269 * 244.99991 * 3 2 1 32 32 H 1.09000 * 109.46930 * 23.68982 * 5 4 3 33 33 H 1.08994 * 109.46776 * 143.68569 * 5 4 3 34 34 H 0.97004 * 119.99766 * 179.97438 * 9 8 6 35 35 H 0.97005 * 119.99851 * 4.82933 * 18 16 14 36 36 H 1.08000 * 119.99947 * 0.02562 * 20 19 18 37 37 H 1.08011 * 119.99348 * 179.74790 * 21 20 19 38 38 H 0.97008 * 119.99870 * 0.02562 * 23 22 21 39 39 H 1.09004 * 109.47250 * 59.99913 * 24 23 22 40 40 H 1.08998 * 109.47688 * 179.97438 * 24 23 22 41 41 H 1.09008 * 109.47041 * 300.00077 * 24 23 22 42 42 H 1.07999 * 120.00206 * 180.02562 * 25 22 21 43 43 H 1.07993 * 119.99976 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5294 1.7655 2.4515 6 6 2.8592 3.2230 2.6463 7 1 3.3639 3.7715 1.8648 8 6 2.5167 3.8562 3.8222 9 7 2.8051 5.1279 3.9924 10 14 1.6431 2.9075 5.1736 11 1 2.6489 2.3019 6.0829 12 1 0.7726 3.8318 5.9438 13 1 0.8134 1.8349 4.5685 14 6 4.2768 0.9576 0.9580 15 8 4.6383 0.5064 -0.1092 16 6 5.2536 1.0981 2.0786 17 8 4.8909 1.5444 3.1476 18 7 6.5381 0.7294 1.9032 19 6 7.4296 0.7658 2.9805 20 6 8.4278 -0.1944 3.0889 21 6 9.3044 -0.1612 4.1546 22 6 9.1955 0.8387 5.1128 23 7 10.0872 0.8757 6.1893 24 6 9.9721 1.9297 7.2001 25 6 8.2010 1.8022 5.0014 26 6 7.3206 1.7658 3.9389 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6212 1.4027 -0.9313 32 1 1.4508 1.6246 2.5216 33 1 3.0238 1.1749 3.2226 34 1 2.5637 5.5735 4.8196 35 1 6.8443 0.4390 1.0298 36 1 8.5157 -0.9687 2.3412 37 1 10.0779 -0.9101 4.2410 38 1 10.7821 0.2032 6.2668 39 1 8.9913 1.8747 7.6724 40 1 10.7466 1.7954 7.9551 41 1 10.0924 2.9034 6.7250 42 1 8.1166 2.5798 5.7461 43 1 6.5478 2.5150 3.8521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599880806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:51 Heat of formation + Delta-G solvation = 10.905860 kcal Electronic energy + Delta-G solvation = -26459.056102 eV Core-core repulsion = 22699.068952 eV Total energy + Delta-G solvation = -3759.987150 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.50260 -39.26399 -37.89447 -36.11635 -35.53426 -33.64974 -33.12020 -32.08961 -30.75116 -28.86265 -28.14521 -26.65222 -25.57319 -23.60488 -22.68998 -22.10553 -20.93545 -19.93780 -19.09174 -17.63807 -17.09783 -17.00219 -16.81134 -15.97843 -15.63712 -15.35250 -15.03459 -14.48512 -14.28600 -14.15810 -14.00251 -13.89029 -13.44984 -13.25949 -13.00956 -12.76382 -12.50653 -12.32956 -12.30876 -12.11332 -11.85656 -11.57992 -11.27920 -10.99439 -10.96014 -10.63503 -10.46142 -10.36771 -10.16398 -9.53093 -9.27189 -9.04880 -8.78854 -8.60941 -8.41902 -7.94849 -7.00634 -6.04215 -4.00894 1.56922 1.67132 2.20664 2.36548 3.05150 3.33817 3.38456 3.42068 3.48263 3.81781 4.14562 4.16562 4.45129 4.94823 4.99825 5.11302 5.16490 5.21176 5.30409 5.39283 5.39946 5.57173 5.64574 5.67968 5.75668 5.79396 6.03072 6.14243 6.18050 6.28083 6.42102 6.51698 6.65598 6.76568 6.78897 6.88237 6.94240 7.09063 7.20203 7.45098 7.58341 7.63628 7.71536 7.91114 8.30745 8.51262 8.66401 8.96085 9.56654 11.09087 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.004408 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.927940 B = 6351.051124 C = 8094.511074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.139 3.861 4 N -0.553 5.553 5 C 0.200 3.800 6 C -0.512 4.512 7 H 0.072 0.928 8 C 0.081 3.919 9 N -0.898 5.898 10 Si 0.872 3.128 11 H -0.272 1.272 12 H -0.288 1.288 13 H -0.267 1.267 14 C 0.511 3.489 15 O -0.556 6.556 16 C 0.492 3.508 17 O -0.443 6.443 18 N -0.657 5.657 19 C 0.096 3.904 20 C -0.099 4.099 21 C -0.181 4.181 22 C 0.192 3.808 23 N -0.758 5.758 24 C 0.094 3.906 25 C -0.175 4.175 26 C -0.068 4.068 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.030 0.970 33 H 0.057 0.943 34 H 0.263 0.737 35 H 0.413 0.587 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.397 0.603 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.123 0.877 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.983 -10.449 0.296 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.179 4.179 3 C 0.017 3.983 4 N -0.282 5.282 5 C 0.080 3.920 6 C -0.551 4.551 7 H 0.090 0.910 8 C -0.121 4.121 9 N -0.537 5.537 10 Si 0.699 3.301 11 H -0.198 1.198 12 H -0.214 1.214 13 H -0.192 1.192 14 C 0.294 3.706 15 O -0.436 6.436 16 C 0.273 3.727 17 O -0.311 6.311 18 N -0.305 5.305 19 C 0.001 3.999 20 C -0.120 4.120 21 C -0.204 4.204 22 C 0.090 3.910 23 N -0.389 5.389 24 C -0.051 4.051 25 C -0.198 4.198 26 C -0.089 4.089 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.250 0.750 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.230 0.770 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.141 0.859 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.722 -9.997 0.797 13.967 hybrid contribution -0.060 -0.708 0.531 0.887 sum 9.662 -10.705 1.328 14.481 Atomic orbital electron populations 1.23825 0.95740 1.01813 1.01123 1.23333 0.96127 0.99077 0.99358 1.20630 0.92251 0.95325 0.90082 1.47899 1.07430 1.60357 1.12525 1.20305 0.95315 0.97589 0.78796 1.21075 1.38904 0.92220 1.02867 0.90979 1.24695 0.95285 0.94557 0.97592 1.69889 1.47475 1.09965 1.26359 0.86915 0.80033 0.80105 0.83004 1.19797 1.21405 1.19203 1.19851 0.83703 0.79452 0.87642 1.90659 1.78827 1.46503 1.27641 1.20234 0.82878 0.80097 0.89496 1.90912 1.76779 1.37246 1.26172 1.43061 1.08346 1.66898 1.12227 1.17534 0.93685 0.96926 0.91789 1.20600 0.95856 0.97095 0.98426 1.20244 1.03172 1.00687 0.96286 1.17841 0.90452 0.94639 0.88054 1.44352 1.35646 1.33249 1.25666 1.21494 1.01667 0.91061 0.90887 1.20584 0.97259 1.00882 1.01030 1.21313 0.97933 0.96726 0.92909 0.88664 0.88240 0.87544 0.89181 0.89273 0.95205 0.92547 0.92717 0.75034 0.85893 0.86275 0.77014 0.92992 0.91278 0.93008 0.85923 0.83420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 14.32 29.01 0.42 -2.07 16 2 C -0.16 -2.44 9.84 -36.03 -0.35 -2.80 16 3 C 0.14 2.44 5.83 -5.19 -0.03 2.41 16 4 N -0.55 -11.53 2.46 -176.99 -0.44 -11.96 16 5 C 0.20 4.72 3.85 -5.19 -0.02 4.70 16 6 C -0.51 -14.09 8.34 -34.44 -0.29 -14.38 16 7 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 8 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 9 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 10 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 14 C 0.51 10.52 7.67 -11.64 -0.09 10.43 16 15 O -0.56 -11.30 16.04 5.48 0.09 -11.21 16 16 C 0.49 10.03 7.57 -11.64 -0.09 9.94 16 17 O -0.44 -10.35 9.56 5.46 0.05 -10.30 16 18 N -0.66 -11.05 5.32 -10.26 -0.05 -11.10 16 19 C 0.10 1.56 6.30 -83.67 -0.53 1.04 16 20 C -0.10 -1.31 9.96 -39.40 -0.39 -1.70 16 21 C -0.18 -2.22 9.89 -39.41 -0.39 -2.61 16 22 C 0.19 2.53 6.66 -83.70 -0.56 1.98 16 23 N -0.76 -7.73 5.89 -65.35 -0.39 -8.11 16 24 C 0.09 0.82 9.94 59.84 0.59 1.42 16 25 C -0.17 -2.70 9.30 -39.41 -0.37 -3.06 16 26 C -0.07 -1.22 8.69 -39.40 -0.34 -1.56 16 27 H 0.10 1.08 8.06 -52.48 -0.42 0.66 16 28 H 0.10 1.26 7.84 -52.49 -0.41 0.85 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.09 1.55 7.76 -51.93 -0.40 1.15 16 31 H 0.09 1.52 7.36 -51.93 -0.38 1.14 16 32 H 0.03 0.69 7.08 -51.93 -0.37 0.32 16 33 H 0.06 1.39 5.26 -51.93 -0.27 1.12 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.41 5.99 8.30 -40.82 -0.34 5.65 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 38 H 0.40 3.11 8.84 -40.82 -0.36 2.75 16 39 H 0.05 0.49 7.95 -51.93 -0.41 0.08 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.47 7.95 -51.92 -0.41 0.06 16 42 H 0.12 1.78 6.73 -52.49 -0.35 1.43 16 43 H 0.15 3.11 6.23 -52.49 -0.33 2.78 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -32.52 363.13 -7.44 -39.96 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -5.75 Total: 10.83 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -2.53 Total: 5.93 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.10 Total: -57.52 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: 0.14 Total: -21.51 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.52 -7.44 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599880806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.867 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds