Wall clock time and date at job start Tue Mar 31 2020 11:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99723 * 2 1 4 4 N 1.46505 * 109.46612 * 125.00119 * 3 2 1 5 5 C 1.46498 * 120.00089 * 274.82823 * 4 3 2 6 6 C 1.50701 * 109.47607 * 263.68872 * 5 4 3 7 7 H 1.08000 * 119.99296 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00136 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99837 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99727 * 359.97438 * 8 6 5 11 11 H 1.48493 * 109.47115 * 90.00177 * 10 8 6 12 12 H 1.48502 * 109.46570 * 210.00055 * 10 8 6 13 13 H 1.48499 * 109.47190 * 329.99560 * 10 8 6 14 14 C 1.34776 * 120.00000 * 94.83559 * 4 3 2 15 15 O 1.21369 * 119.99798 * 354.62557 * 14 4 3 16 16 C 1.49326 * 120.00009 * 174.62156 * 14 4 3 17 17 O 1.21389 * 119.99954 * 0.29652 * 16 14 4 18 18 N 1.34779 * 119.99881 * 180.29866 * 16 14 4 19 19 C 1.39888 * 119.99983 * 184.82255 * 18 16 14 20 20 C 1.38930 * 120.00120 * 144.90115 * 19 18 16 21 21 C 1.38025 * 119.99371 * 180.23204 * 20 19 18 22 22 C 1.38921 * 120.00697 * 359.47032 * 21 20 19 23 23 N 1.39831 * 120.00292 * 180.27483 * 22 21 20 24 24 C 1.46493 * 120.00390 * 180.02562 * 23 22 21 25 25 C 1.38919 * 119.99939 * 0.25594 * 22 21 20 26 26 C 1.38030 * 120.00097 * 0.02562 * 25 22 21 27 27 H 1.08005 * 119.99767 * 179.97438 * 1 2 3 28 28 H 1.07993 * 120.00235 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99808 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47339 * 5.00492 * 3 2 1 31 31 H 1.08996 * 109.47269 * 244.99991 * 3 2 1 32 32 H 1.09000 * 109.46930 * 23.68982 * 5 4 3 33 33 H 1.08994 * 109.46776 * 143.68569 * 5 4 3 34 34 H 0.97004 * 119.99766 * 179.97438 * 9 8 6 35 35 H 0.97005 * 119.99851 * 4.82933 * 18 16 14 36 36 H 1.08000 * 119.99947 * 0.02562 * 20 19 18 37 37 H 1.08011 * 119.99348 * 179.74790 * 21 20 19 38 38 H 0.97008 * 119.99870 * 0.02562 * 23 22 21 39 39 H 1.09004 * 109.47250 * 59.99913 * 24 23 22 40 40 H 1.08998 * 109.47688 * 179.97438 * 24 23 22 41 41 H 1.09008 * 109.47041 * 300.00077 * 24 23 22 42 42 H 1.07999 * 120.00206 * 180.02562 * 25 22 21 43 43 H 1.07993 * 119.99976 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5294 1.7655 2.4515 6 6 2.8592 3.2230 2.6463 7 1 3.3639 3.7715 1.8648 8 6 2.5167 3.8562 3.8222 9 7 2.8051 5.1279 3.9924 10 14 1.6431 2.9075 5.1736 11 1 2.6489 2.3019 6.0829 12 1 0.7726 3.8318 5.9438 13 1 0.8134 1.8349 4.5685 14 6 4.2768 0.9576 0.9580 15 8 4.6383 0.5064 -0.1092 16 6 5.2536 1.0981 2.0786 17 8 4.8909 1.5444 3.1476 18 7 6.5381 0.7294 1.9032 19 6 7.4296 0.7658 2.9805 20 6 8.4278 -0.1944 3.0889 21 6 9.3044 -0.1612 4.1546 22 6 9.1955 0.8387 5.1128 23 7 10.0872 0.8757 6.1893 24 6 9.9721 1.9297 7.2001 25 6 8.2010 1.8022 5.0014 26 6 7.3206 1.7658 3.9389 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6212 1.4027 -0.9313 32 1 1.4508 1.6246 2.5216 33 1 3.0238 1.1749 3.2226 34 1 2.5637 5.5735 4.8196 35 1 6.8443 0.4390 1.0298 36 1 8.5157 -0.9687 2.3412 37 1 10.0779 -0.9101 4.2410 38 1 10.7821 0.2032 6.2668 39 1 8.9913 1.8747 7.6724 40 1 10.7466 1.7954 7.9551 41 1 10.0924 2.9034 6.7250 42 1 8.1166 2.5798 5.7461 43 1 6.5478 2.5150 3.8521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599880806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:50 Heat of formation + Delta-G solvation = -11.715473 kcal Electronic energy + Delta-G solvation = -26460.037036 eV Core-core repulsion = 22699.068952 eV Total energy + Delta-G solvation = -3760.968085 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.01648 -40.56798 -39.31454 -37.65654 -36.75955 -35.04276 -34.67783 -33.88550 -31.89384 -30.06341 -29.99088 -28.03137 -26.61948 -25.17053 -24.25170 -23.50713 -22.13867 -21.23799 -20.49539 -19.11679 -18.95831 -18.36278 -18.28665 -17.46063 -16.93847 -16.78607 -16.41452 -16.02723 -15.90102 -15.32975 -15.18890 -15.10369 -14.83587 -14.64397 -14.44779 -14.18250 -14.03685 -13.91308 -13.50857 -13.41229 -13.15562 -12.87290 -12.82235 -12.65215 -12.31734 -12.17428 -12.09706 -11.95872 -11.67559 -11.57599 -10.75735 -10.51660 -10.25910 -10.10808 -9.84449 -9.65527 -8.24754 -8.08258 -6.25183 0.23179 0.50181 0.77275 1.14176 1.35343 1.40805 1.45636 1.68109 2.25189 2.37517 2.59720 2.67841 2.95300 3.13090 3.42353 3.99242 4.02308 4.09384 4.13665 4.39504 4.45504 4.46660 4.57949 4.62551 4.65757 4.66231 4.76547 4.90986 4.93949 5.01791 5.07214 5.19917 5.32140 5.37330 5.48277 5.50966 5.61210 5.67687 5.83063 5.90978 6.07166 6.19943 6.39204 6.41101 6.70451 6.81427 6.94198 7.11508 7.35835 8.92371 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.004408 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.927940 B = 6351.051124 C = 8094.511074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.183 4.183 3 C 0.136 3.864 4 N -0.559 5.559 5 C 0.215 3.785 6 C -0.504 4.504 7 H 0.026 0.974 8 C 0.024 3.976 9 N -0.947 5.947 10 Si 0.935 3.065 11 H -0.279 1.279 12 H -0.281 1.281 13 H -0.239 1.239 14 C 0.508 3.492 15 O -0.554 6.554 16 C 0.486 3.514 17 O -0.483 6.483 18 N -0.638 5.638 19 C 0.066 3.934 20 C -0.083 4.083 21 C -0.172 4.172 22 C 0.200 3.800 23 N -0.746 5.746 24 C 0.088 3.912 25 C -0.194 4.194 26 C -0.093 4.093 27 H 0.121 0.879 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.424 0.576 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.412 0.588 39 H 0.041 0.959 40 H 0.102 0.898 41 H 0.045 0.955 42 H 0.119 0.881 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.742 -13.709 0.803 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.202 4.202 3 C 0.015 3.985 4 N -0.289 5.289 5 C 0.094 3.906 6 C -0.542 4.542 7 H 0.045 0.955 8 C -0.174 4.174 9 N -0.588 5.588 10 Si 0.759 3.241 11 H -0.205 1.205 12 H -0.207 1.207 13 H -0.162 1.162 14 C 0.291 3.709 15 O -0.435 6.435 16 C 0.267 3.733 17 O -0.355 6.355 18 N -0.287 5.287 19 C -0.028 4.028 20 C -0.104 4.104 21 C -0.195 4.195 22 C 0.095 3.905 23 N -0.378 5.378 24 C -0.056 4.056 25 C -0.217 4.217 26 C -0.113 4.113 27 H 0.140 0.860 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.263 0.737 36 H 0.173 0.827 37 H 0.178 0.822 38 H 0.249 0.751 39 H 0.060 0.940 40 H 0.121 0.879 41 H 0.064 0.936 42 H 0.137 0.863 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.526 -13.298 1.269 17.007 hybrid contribution -0.126 0.325 0.338 0.486 sum 10.400 -12.972 1.608 16.704 Atomic orbital electron populations 1.24098 0.94957 1.03354 0.97445 1.23129 0.96753 0.97633 1.02660 1.20797 0.91931 0.96994 0.88803 1.47925 1.08157 1.60314 1.12493 1.19947 0.95706 0.94672 0.80289 1.21182 1.37444 0.94081 1.01515 0.95534 1.25531 0.96365 0.95346 1.00141 1.70037 1.49575 1.11924 1.27261 0.85908 0.79010 0.79424 0.79756 1.20513 1.20689 1.16214 1.19966 0.83803 0.79390 0.87776 1.90640 1.78767 1.46555 1.27493 1.20358 0.83976 0.80016 0.88940 1.90896 1.77659 1.39461 1.27448 1.42909 1.07264 1.65396 1.13101 1.17713 0.95096 0.98240 0.91791 1.20929 0.94003 0.96306 0.99137 1.20691 1.03237 1.00626 0.94910 1.17954 0.89789 0.93788 0.88925 1.44423 1.34972 1.33689 1.24672 1.21634 1.02365 0.90484 0.91165 1.20555 0.98274 1.02202 1.00671 1.21018 0.98153 0.97059 0.95109 0.86045 0.87655 0.87479 0.89303 0.89344 0.93843 0.93055 0.92694 0.73720 0.82679 0.82248 0.75129 0.94034 0.87931 0.93587 0.86278 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 14.32 67.78 0.97 -2.84 16 2 C -0.18 -5.30 9.84 25.64 0.25 -5.05 16 3 C 0.14 4.76 5.83 85.63 0.50 5.26 16 4 N -0.56 -23.75 2.46 -832.23 -2.05 -25.80 16 5 C 0.22 10.29 3.85 85.63 0.33 10.62 16 6 C -0.50 -28.97 8.34 25.60 0.21 -28.75 16 7 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 8 C 0.02 1.40 5.47 84.66 0.46 1.86 16 9 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 10 Si 0.93 45.04 27.47 68.60 1.88 46.93 16 11 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 14 C 0.51 21.42 7.67 87.23 0.67 22.09 16 15 O -0.55 -22.60 16.04 -3.30 -0.05 -22.65 16 16 C 0.49 20.66 7.57 87.23 0.66 21.32 16 17 O -0.48 -23.96 9.56 -3.37 -0.03 -23.99 16 18 N -0.64 -21.92 5.32 -304.72 -1.62 -23.54 16 19 C 0.07 2.18 6.30 38.19 0.24 2.42 16 20 C -0.08 -2.01 9.96 22.38 0.22 -1.78 16 21 C -0.17 -3.63 9.89 22.38 0.22 -3.41 16 22 C 0.20 4.91 6.66 38.19 0.25 5.16 16 23 N -0.75 -13.17 5.89 -360.66 -2.13 -15.29 16 24 C 0.09 1.39 9.94 127.77 1.27 2.66 16 25 C -0.19 -6.18 9.30 22.38 0.21 -5.97 16 26 C -0.09 -3.52 8.69 22.39 0.19 -3.33 16 27 H 0.12 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.11 2.38 7.84 -2.91 -0.02 2.36 16 29 H 0.11 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.09 3.07 7.76 -2.39 -0.02 3.05 16 31 H 0.09 3.04 7.36 -2.39 -0.02 3.03 16 32 H 0.04 1.97 7.08 -2.39 -0.02 1.95 16 33 H 0.05 2.57 5.26 -2.39 -0.01 2.55 16 34 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 35 H 0.42 12.21 8.30 -92.70 -0.77 11.44 16 36 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.16 2.13 8.06 -2.90 -0.02 2.11 16 38 H 0.41 4.82 8.84 -92.70 -0.82 4.00 16 39 H 0.04 0.76 7.95 -2.38 -0.02 0.74 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 0.79 7.95 -2.38 -0.02 0.77 16 42 H 0.12 3.71 6.73 -2.91 -0.02 3.69 16 43 H 0.10 4.77 6.23 -2.91 -0.02 4.75 16 Total: -1.00 -75.19 363.13 2.38 -72.81 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -0.60 Total: 30.89 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 6.67 Total: 20.26 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -5.49 Total: -124.25 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -0.09 Total: -46.64 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -75.19 2.38 -72.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599880806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.091 kcal (2) G-P(sol) polarization free energy of solvation -75.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds