Wall clock time and date at job start Tue Mar 31 2020 11:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00300 * 2 1 4 4 C 1.52996 * 109.47670 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46758 * 65.00099 * 4 3 2 6 6 C 1.46497 * 119.99908 * 269.99818 * 5 4 3 7 7 C 1.50696 * 109.47453 * 272.02978 * 6 5 4 8 8 H 1.07996 * 119.99972 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00072 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99792 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99929 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47070 * 89.99736 * 11 9 7 13 13 H 1.48494 * 109.47117 * 210.00070 * 11 9 7 14 14 H 1.48504 * 109.47001 * 330.00135 * 11 9 7 15 15 C 1.34780 * 119.99913 * 90.00411 * 5 4 3 16 16 O 1.21594 * 119.99889 * 4.56877 * 15 5 4 17 17 C 1.47523 * 119.99938 * 184.57381 * 15 5 4 18 18 C 1.39447 * 120.24596 * 300.82924 * 17 15 5 19 19 C 1.38278 * 120.27943 * 180.02562 * 18 17 15 20 20 C 1.37887 * 120.72906 * 359.74685 * 19 18 17 21 21 C 1.39676 * 120.10690 * 0.02562 * 20 19 18 22 22 N 1.35852 * 133.50961 * 179.97438 * 21 20 19 23 23 C 1.30093 * 109.53441 * 180.02562 * 22 21 20 24 24 N 1.36119 * 110.04706 * 0.02562 * 23 22 21 25 25 C 1.46503 * 126.30639 * 179.97438 * 24 23 22 26 26 C 1.37512 * 107.38556 * 359.97438 * 24 23 22 27 27 H 1.09003 * 109.46974 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46692 * 299.99267 * 1 2 3 29 29 H 1.08995 * 109.47314 * 60.00080 * 1 2 3 30 30 H 1.09001 * 109.46888 * 59.99780 * 3 2 1 31 31 H 1.09001 * 109.47257 * 300.00743 * 3 2 1 32 32 H 1.08993 * 109.46950 * 305.00305 * 4 3 2 33 33 H 1.09001 * 109.47302 * 185.00306 * 4 3 2 34 34 H 1.08999 * 109.47352 * 32.03261 * 6 5 4 35 35 H 1.09000 * 109.46980 * 152.03080 * 6 5 4 36 36 H 0.97008 * 119.99532 * 180.02562 * 10 9 7 37 37 H 1.07998 * 119.85853 * 359.79345 * 18 17 15 38 38 H 1.08001 * 119.63597 * 179.77135 * 19 18 17 39 39 H 1.07998 * 119.94521 * 180.02562 * 20 19 18 40 40 H 1.08001 * 124.97386 * 179.97438 * 23 22 21 41 41 H 1.09006 * 109.47232 * 264.55910 * 25 24 23 42 42 H 1.09001 * 109.47371 * 24.56100 * 25 24 23 43 43 H 1.08997 * 109.47197 * 144.56043 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1052 -0.8920 -1.3428 7 6 5.4852 -1.3021 -0.8975 8 1 6.1947 -0.5528 -0.5789 9 6 5.8421 -2.6339 -0.8969 10 7 4.9780 -3.5463 -1.2845 11 14 7.5525 -3.1423 -0.3442 12 1 7.5439 -3.4000 1.1182 13 1 7.9581 -4.3772 -1.0622 14 1 8.5153 -2.0535 -0.6492 15 6 4.2615 1.3339 -2.3219 16 8 4.2345 2.5455 -2.2235 17 6 4.6069 0.7060 -3.6113 18 6 5.7029 -0.1512 -3.7039 19 6 6.0276 -0.7397 -4.9124 20 6 5.2737 -0.4945 -6.0406 21 6 4.1682 0.3565 -5.9732 22 7 3.2577 0.7812 -6.8877 23 6 2.4085 1.5837 -6.3157 24 7 2.7175 1.7278 -4.9979 25 6 1.9966 2.5497 -4.0227 26 6 3.8310 0.9597 -4.7506 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5682 0.8408 33 1 3.9786 2.1765 0.0890 34 1 3.3612 -1.3634 -0.7007 35 1 3.9475 -1.2077 -2.3741 36 1 5.2290 -4.4834 -1.2837 37 1 6.3028 -0.3534 -2.8290 38 1 6.8808 -1.3991 -4.9731 39 1 5.5385 -0.9613 -6.9778 40 1 1.5802 2.0658 -6.8137 41 1 2.4806 3.5229 -3.9392 42 1 0.9660 2.6836 -4.3514 43 1 2.0068 2.0544 -3.0518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600817261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:02 Heat of formation + Delta-G solvation = 2.949908 kcal Electronic energy + Delta-G solvation = -27861.678911 eV Core-core repulsion = 24101.346765 eV Total energy + Delta-G solvation = -3760.332146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.84696 -39.28232 -37.52834 -36.60046 -34.94813 -33.82466 -32.65210 -30.80874 -29.49081 -28.81657 -27.12939 -26.78379 -26.00849 -23.73721 -22.91940 -22.44419 -21.75488 -20.73951 -18.45074 -17.16476 -16.71884 -16.52594 -16.30491 -15.99601 -15.71781 -15.55995 -15.18653 -14.84834 -14.69069 -14.33393 -14.07951 -13.45926 -13.37582 -12.99292 -12.96741 -12.65343 -12.29382 -12.09313 -11.77495 -11.63724 -11.55732 -11.44978 -11.18722 -11.04638 -10.96084 -10.89991 -10.54948 -10.18408 -9.97575 -9.94008 -9.73301 -9.49127 -9.07910 -8.52992 -7.95383 -7.78863 -7.57341 -6.14801 -4.21848 1.23709 1.96791 2.90633 2.98750 3.23250 3.31329 3.32452 3.36775 3.82529 4.06637 4.31296 4.37822 4.54223 4.81121 4.89799 5.15996 5.19322 5.27993 5.33609 5.40684 5.51589 5.54798 5.57411 5.61126 5.63881 5.70103 5.78476 5.87645 5.91815 5.99730 6.27206 6.28717 6.53542 6.77054 6.79264 6.95832 7.02242 7.30159 7.35445 7.39800 7.40438 7.55964 7.79329 8.09662 8.13296 8.27843 8.75812 8.91855 9.43248 10.91567 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009686 B = 0.006848 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.950968 B = 4087.664245 C = 5990.767719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.373 6.373 3 C 0.049 3.951 4 C 0.119 3.881 5 N -0.578 5.578 6 C 0.237 3.763 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.070 3.930 10 N -0.881 5.881 11 Si 0.890 3.110 12 H -0.280 1.280 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.559 3.441 16 O -0.576 6.576 17 C -0.115 4.115 18 C -0.034 4.034 19 C -0.131 4.131 20 C -0.054 4.054 21 C 0.027 3.973 22 N -0.495 5.495 23 C 0.243 3.757 24 N -0.490 5.490 25 C 0.087 3.913 26 C 0.088 3.912 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.040 0.960 36 H 0.265 0.735 37 H 0.159 0.841 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.209 0.791 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.125 8.575 -2.877 11.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.306 5.306 6 C 0.118 3.882 7 C -0.579 4.579 8 H 0.079 0.921 9 C -0.134 4.134 10 N -0.519 5.519 11 Si 0.717 3.283 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.196 1.196 15 C 0.348 3.652 16 O -0.459 6.459 17 C -0.121 4.121 18 C -0.053 4.053 19 C -0.151 4.151 20 C -0.074 4.074 21 C -0.090 4.090 22 N -0.215 5.215 23 C -0.042 4.042 24 N -0.180 5.180 25 C -0.056 4.056 26 C -0.023 4.023 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.177 0.823 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.225 0.775 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.137 8.617 -3.577 11.747 hybrid contribution 0.452 -0.030 1.244 1.324 sum -6.685 8.588 -2.332 11.130 Atomic orbital electron populations 1.22686 0.82142 1.02516 0.99069 1.88090 1.18657 1.27248 1.95158 1.23027 0.95329 0.85026 0.99518 1.21377 0.90963 0.99848 0.88313 1.48195 1.62542 1.10296 1.09608 1.19569 0.97417 0.72242 0.99021 1.21444 0.98454 0.92420 1.45615 0.92125 1.24898 0.97279 0.96331 0.94878 1.69940 1.34640 1.01282 1.45992 0.86623 0.84395 0.78339 0.78916 1.20576 1.20999 1.19647 1.18251 0.76650 0.86151 0.84188 1.90673 1.55768 1.14027 1.85392 1.18650 0.98785 1.03507 0.91121 1.21714 0.94695 0.90081 0.98859 1.20870 1.00911 1.01370 0.91973 1.20316 0.92221 0.95931 0.98916 1.18866 0.98579 1.02634 0.88904 1.70409 1.05472 1.14329 1.31242 1.25174 1.00211 0.98289 0.80530 1.45057 1.24036 1.38739 1.10173 1.21997 0.95840 0.95591 0.92139 1.18586 0.90544 0.96901 0.96250 0.89788 0.94622 0.94813 0.93011 0.93924 0.89121 0.89243 0.93385 0.94243 0.92530 0.82340 0.85073 0.85637 0.77455 0.90250 0.90144 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.43 9.49 -35.23 -0.33 -6.77 16 3 C 0.05 0.75 6.28 37.16 0.23 0.98 16 4 C 0.12 2.10 5.86 -4.04 -0.02 2.08 16 5 N -0.58 -12.05 2.42 -176.30 -0.43 -12.48 16 6 C 0.24 5.66 4.54 -5.20 -0.02 5.64 16 7 C -0.54 -13.56 6.90 -34.44 -0.24 -13.79 16 8 H 0.06 1.53 7.80 -52.49 -0.41 1.12 16 9 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 10 N -0.88 -24.00 13.29 55.43 0.74 -23.26 16 11 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 15 C 0.56 11.76 5.54 -12.47 -0.07 11.69 16 16 O -0.58 -12.39 15.03 5.28 0.08 -12.31 16 17 C -0.11 -2.39 4.52 -104.94 -0.47 -2.86 16 18 C -0.03 -0.69 7.86 -39.12 -0.31 -1.00 16 19 C -0.13 -2.35 9.99 -39.69 -0.40 -2.75 16 20 C -0.05 -0.95 10.09 -39.17 -0.40 -1.35 16 21 C 0.03 0.52 7.22 -84.72 -0.61 -0.09 16 22 N -0.50 -8.74 11.28 -12.05 -0.14 -8.87 16 23 C 0.24 3.52 12.50 -89.72 -1.12 2.40 16 24 N -0.49 -7.99 3.19 -122.94 -0.39 -8.38 16 25 C 0.09 1.16 9.72 59.85 0.58 1.74 16 26 C 0.09 1.72 6.80 -83.77 -0.57 1.15 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.65 7.37 -51.93 -0.38 0.27 16 32 H 0.09 1.64 8.07 -51.93 -0.42 1.22 16 33 H 0.09 1.50 7.36 -51.93 -0.38 1.12 16 34 H 0.05 1.25 7.08 -51.93 -0.37 0.88 16 35 H 0.04 1.03 6.12 -51.93 -0.32 0.71 16 36 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.16 3.43 5.74 -52.49 -0.30 3.13 16 38 H 0.13 2.03 8.06 -52.49 -0.42 1.60 16 39 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.21 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.08 1.06 8.04 -51.93 -0.42 0.65 16 42 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 43 H 0.08 1.24 5.66 -51.93 -0.29 0.94 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -31.68 356.28 -8.33 -40.01 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.81 Total: 4.70 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -2.40 Total: 7.07 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.22 Total: -53.00 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.26 Total: -19.07 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.68 -8.33 -40.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600817261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.959 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds