Wall clock time and date at job start Tue Mar 31 2020 11:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35973 * 117.00171 * 2 1 4 4 C 1.39077 * 119.86427 * 359.97438 * 3 2 1 5 5 C 1.37984 * 120.41098 * 179.97438 * 4 3 2 6 6 C 1.38541 * 119.96307 * 0.27054 * 5 4 3 7 7 O 1.35388 * 133.69788 * 179.75028 * 6 5 4 8 8 C 1.34440 * 108.18317 * 179.97438 * 7 6 5 9 9 N 1.37653 * 124.96123 * 179.97438 * 8 7 6 10 10 C 1.46959 * 111.00165 * 123.77383 * 9 8 7 11 11 C 1.53051 * 109.36515 * 176.81666 * 10 9 8 12 12 N 1.46959 * 109.36576 * 58.39940 * 11 10 9 13 13 C 1.46904 * 110.99745 * 176.81093 * 12 11 10 14 14 C 1.50692 * 109.46948 * 58.98018 * 13 12 11 15 15 H 1.08004 * 120.00609 * 5.01089 * 14 13 12 16 16 C 1.37880 * 119.99845 * 185.00402 * 14 13 12 17 17 N 1.31517 * 120.00077 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00070 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47353 * 60.00222 * 18 16 14 20 20 H 1.48498 * 109.47197 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47180 * 300.00346 * 18 16 14 22 22 C 1.46951 * 110.88146 * 300.68345 * 12 11 10 23 23 C 1.46957 * 110.99699 * 359.97438 * 9 8 7 24 24 N 1.30864 * 110.08589 * 359.56221 * 8 7 6 25 25 C 1.36156 * 108.70364 * 0.49087 * 24 8 7 26 26 C 1.38214 * 119.86317 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46912 * 60.00065 * 1 2 3 28 28 H 1.09003 * 109.47691 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47515 * 300.00422 * 1 2 3 30 30 H 1.08009 * 119.79628 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.01656 * 179.97438 * 5 4 3 32 32 H 1.09006 * 109.48608 * 296.78261 * 10 9 8 33 33 H 1.08994 * 109.48805 * 56.84718 * 10 9 8 34 34 H 1.08996 * 109.48891 * 298.43324 * 11 10 9 35 35 H 1.09001 * 109.48779 * 178.37002 * 11 10 9 36 36 H 1.09007 * 109.46581 * 178.98062 * 13 12 11 37 37 H 1.08996 * 109.47323 * 298.97551 * 13 12 11 38 38 H 0.96998 * 119.99823 * 180.02562 * 17 16 14 39 39 H 1.09006 * 109.48414 * 299.35140 * 22 12 11 40 40 H 1.08998 * 109.49052 * 179.29475 * 22 12 11 41 41 H 1.09001 * 109.48829 * 303.15265 * 23 9 8 42 42 H 1.08996 * 109.49187 * 63.19647 * 23 9 8 43 43 H 1.07995 * 120.15756 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2861 2.3761 -0.0005 5 6 1.9008 3.6115 0.0000 6 6 3.2836 3.6963 -0.0046 7 8 4.1573 4.7305 -0.0097 8 6 5.4037 4.2268 -0.0120 9 7 6.5577 4.9771 -0.0176 10 6 7.4185 4.6281 1.1212 11 6 8.7224 5.4248 1.0347 12 7 8.4160 6.8621 1.0309 13 6 9.6475 7.6629 1.0249 14 6 10.4644 7.3189 -0.1938 15 1 10.0690 6.6403 -0.9351 16 6 11.7167 7.8707 -0.3625 17 7 12.1984 8.6968 0.5403 18 14 12.7290 7.4449 -1.8736 19 1 11.9900 7.8522 -3.0955 20 1 14.0278 8.1627 -1.8177 21 1 12.9744 5.9806 -1.9085 22 6 7.5552 7.2111 -0.1079 23 6 6.2513 6.4144 -0.0215 24 7 5.3599 2.9189 0.0008 25 6 4.0564 2.5257 0.0010 26 6 3.4267 1.2805 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2078 2.3132 -0.0014 31 1 1.3043 4.5118 -0.0009 32 1 6.9056 4.8700 2.0522 33 1 7.6416 3.5616 1.0950 34 1 9.2485 5.1628 0.1168 35 1 9.3503 5.1891 1.8940 36 1 9.3918 8.7224 1.0039 37 1 10.2260 7.4466 1.9230 38 1 13.0792 9.0852 0.4214 39 1 8.0681 6.9692 -1.0388 40 1 7.3322 8.2777 -0.0818 41 1 5.6235 6.6500 -0.8808 42 1 5.7248 6.6765 0.8962 43 1 4.0152 0.3750 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601261359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:59 Heat of formation + Delta-G solvation = 30.961051 kcal Electronic energy + Delta-G solvation = -25953.493262 eV Core-core repulsion = 22194.375771 eV Total energy + Delta-G solvation = -3759.117492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.24730 -40.07676 -39.09580 -36.83028 -35.51138 -34.37733 -32.44344 -31.01767 -30.56762 -29.40630 -27.69410 -27.53442 -25.29424 -23.67866 -23.03375 -22.45724 -21.91990 -21.41089 -19.55221 -18.72899 -17.86814 -17.57227 -16.92185 -16.37188 -16.05034 -16.01359 -15.46920 -14.95935 -14.62214 -14.44854 -14.33108 -14.16981 -13.71549 -13.44367 -13.32658 -13.24984 -12.76398 -12.50301 -12.19464 -12.03879 -11.71866 -11.44623 -11.29446 -11.17475 -11.01205 -10.93383 -10.72619 -10.62242 -10.40896 -10.23436 -9.98538 -9.68592 -9.59161 -8.47875 -8.44900 -8.08486 -7.35035 -6.08227 -4.17565 0.51935 1.08693 2.11004 2.41149 2.75389 3.27586 3.32535 3.35636 3.38219 3.45820 4.32643 4.37568 4.52625 4.56345 4.70624 4.76653 4.76823 4.82969 5.02297 5.07904 5.11858 5.21232 5.24086 5.30745 5.43441 5.58428 5.64936 5.75727 5.86321 5.88853 5.89457 5.99221 6.06448 6.13640 6.40049 6.51776 6.60769 6.65496 6.88565 7.01000 7.13873 7.44750 7.69840 7.81683 7.89533 8.09925 8.20315 8.91652 9.49990 10.97157 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034709 B = 0.002407 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.508869 B =11629.786317 C =11919.000559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.131 3.869 4 C -0.193 4.193 5 C -0.042 4.042 6 C -0.036 4.036 7 O -0.233 6.233 8 C 0.449 3.551 9 N -0.420 5.420 10 C 0.065 3.935 11 C 0.063 3.937 12 N -0.545 5.545 13 C 0.188 3.812 14 C -0.554 4.554 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.062 3.938 23 C 0.051 3.949 24 N -0.504 5.504 25 C 0.091 3.909 26 C -0.114 4.114 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.030 0.970 37 H 0.038 0.962 38 H 0.263 0.737 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.496 -12.212 0.290 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.085 3.915 4 C -0.212 4.212 5 C -0.061 4.061 6 C -0.087 4.087 7 O -0.124 6.124 8 C 0.149 3.851 9 N -0.146 5.146 10 C -0.060 4.060 11 C -0.066 4.066 12 N -0.270 5.270 13 C 0.063 3.937 14 C -0.593 4.593 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.067 4.067 23 C -0.076 4.076 24 N -0.241 5.241 25 C -0.023 4.023 26 C -0.135 4.135 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.707 -12.600 0.381 25.971 hybrid contribution 0.005 0.513 -1.166 1.274 sum -22.702 -12.086 -0.785 25.731 Atomic orbital electron populations 1.23089 0.78178 1.04126 1.01450 1.86093 1.21444 1.26256 1.88917 1.18489 0.91442 0.84325 0.97247 1.20974 1.00177 0.90801 1.09242 1.19563 0.88534 0.98368 0.99668 1.19978 0.92387 0.85598 1.10744 1.84595 1.16130 1.35495 1.76152 1.24091 0.81559 0.87951 0.91527 1.59132 1.05901 1.07192 1.42380 1.22671 0.93553 1.01775 0.87992 1.22023 0.92937 0.88795 1.02882 1.62774 1.19999 1.04162 1.40020 1.19752 0.84363 0.92729 0.96890 1.21694 1.01751 1.28348 1.07463 0.92311 1.24957 0.97618 0.94782 0.96331 1.69929 1.18171 1.30289 1.34419 0.86686 0.79452 0.78679 0.83404 1.20240 1.21229 1.20157 1.21996 0.91018 0.98493 0.95213 1.22541 0.99949 0.82657 1.02408 1.71091 1.18347 1.07315 1.27383 1.19346 0.88612 0.93667 1.00650 1.19134 0.90952 0.95965 1.07412 0.92510 0.88095 0.92495 0.84018 0.84547 0.92619 0.88537 0.92315 0.89722 0.95179 0.94410 0.92682 0.92697 0.89952 0.89614 0.92065 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.94 10.49 -19.66 -0.21 -3.15 16 3 C 0.13 1.40 6.68 -39.28 -0.26 1.13 16 4 C -0.19 -1.72 9.02 -39.36 -0.36 -2.07 16 5 C -0.04 -0.44 10.05 -39.56 -0.40 -0.84 16 6 C -0.04 -0.51 7.41 -38.71 -0.29 -0.80 16 7 O -0.23 -3.57 9.85 2.24 0.02 -3.55 16 8 C 0.45 7.34 7.37 -87.64 -0.65 6.70 16 9 N -0.42 -6.90 4.75 -175.37 -0.83 -7.74 16 10 C 0.06 1.04 5.50 -3.77 -0.02 1.02 16 11 C 0.06 1.16 5.24 -3.77 -0.02 1.14 16 12 N -0.55 -10.96 4.92 -235.91 -1.16 -12.12 16 13 C 0.19 4.59 5.14 -4.98 -0.03 4.56 16 14 C -0.55 -14.60 7.66 -34.44 -0.26 -14.87 16 15 H 0.06 1.55 5.82 -52.48 -0.31 1.24 16 16 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 17 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 18 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.06 1.12 5.32 -3.77 -0.02 1.10 16 23 C 0.05 0.78 4.97 -3.77 -0.02 0.76 16 24 N -0.50 -8.50 11.02 -12.14 -0.13 -8.63 16 25 C 0.09 1.36 7.23 -84.70 -0.61 0.75 16 26 C -0.11 -1.46 10.03 -39.11 -0.39 -1.85 16 27 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 30 H 0.14 0.79 6.26 -52.48 -0.33 0.46 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.48 7.88 -51.93 -0.41 1.07 16 34 H 0.06 1.21 6.61 -51.93 -0.34 0.87 16 35 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.03 0.78 8.12 -51.93 -0.42 0.36 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 39 H 0.05 1.10 6.78 -51.93 -0.35 0.75 16 40 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 41 H 0.09 1.19 8.01 -51.93 -0.42 0.78 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -30.53 350.10 -9.63 -40.16 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.89 Total: -1.16 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.43 Total: -0.43 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -1.39 Total: -53.24 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.18 Total: -6.69 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.53 -9.63 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.125 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds