Wall clock time and date at job start Tue Mar 31 2020 11:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35973 * 117.00171 * 2 1 4 4 C 1.39077 * 119.86427 * 359.97438 * 3 2 1 5 5 C 1.37984 * 120.41098 * 179.97438 * 4 3 2 6 6 C 1.38541 * 119.96307 * 0.27054 * 5 4 3 7 7 O 1.35388 * 133.69788 * 179.75028 * 6 5 4 8 8 C 1.34440 * 108.18317 * 179.97438 * 7 6 5 9 9 N 1.37653 * 124.96123 * 179.97438 * 8 7 6 10 10 C 1.46959 * 111.00165 * 123.77383 * 9 8 7 11 11 C 1.53051 * 109.36515 * 176.81666 * 10 9 8 12 12 N 1.46959 * 109.36576 * 58.39940 * 11 10 9 13 13 C 1.46904 * 110.99745 * 176.81093 * 12 11 10 14 14 C 1.50692 * 109.46948 * 58.98018 * 13 12 11 15 15 H 1.08004 * 120.00609 * 5.01089 * 14 13 12 16 16 C 1.37880 * 119.99845 * 185.00402 * 14 13 12 17 17 N 1.31517 * 120.00077 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00070 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47353 * 60.00222 * 18 16 14 20 20 H 1.48498 * 109.47197 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47180 * 300.00346 * 18 16 14 22 22 C 1.46951 * 110.88146 * 300.68345 * 12 11 10 23 23 C 1.46957 * 110.99699 * 359.97438 * 9 8 7 24 24 N 1.30864 * 110.08589 * 359.56221 * 8 7 6 25 25 C 1.36156 * 108.70364 * 0.49087 * 24 8 7 26 26 C 1.38214 * 119.86317 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46912 * 60.00065 * 1 2 3 28 28 H 1.09003 * 109.47691 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47515 * 300.00422 * 1 2 3 30 30 H 1.08009 * 119.79628 * 359.97438 * 4 3 2 31 31 H 1.07997 * 120.01656 * 179.97438 * 5 4 3 32 32 H 1.09006 * 109.48608 * 296.78261 * 10 9 8 33 33 H 1.08994 * 109.48805 * 56.84718 * 10 9 8 34 34 H 1.08996 * 109.48891 * 298.43324 * 11 10 9 35 35 H 1.09001 * 109.48779 * 178.37002 * 11 10 9 36 36 H 1.09007 * 109.46581 * 178.98062 * 13 12 11 37 37 H 1.08996 * 109.47323 * 298.97551 * 13 12 11 38 38 H 0.96998 * 119.99823 * 180.02562 * 17 16 14 39 39 H 1.09006 * 109.48414 * 299.35140 * 22 12 11 40 40 H 1.08998 * 109.49052 * 179.29475 * 22 12 11 41 41 H 1.09001 * 109.48829 * 303.15265 * 23 9 8 42 42 H 1.08996 * 109.49187 * 63.19647 * 23 9 8 43 43 H 1.07995 * 120.15756 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2861 2.3761 -0.0005 5 6 1.9008 3.6115 0.0000 6 6 3.2836 3.6963 -0.0046 7 8 4.1573 4.7305 -0.0097 8 6 5.4037 4.2268 -0.0120 9 7 6.5577 4.9771 -0.0176 10 6 7.4185 4.6281 1.1212 11 6 8.7224 5.4248 1.0347 12 7 8.4160 6.8621 1.0309 13 6 9.6475 7.6629 1.0249 14 6 10.4644 7.3189 -0.1938 15 1 10.0690 6.6403 -0.9351 16 6 11.7167 7.8707 -0.3625 17 7 12.1984 8.6968 0.5403 18 14 12.7290 7.4449 -1.8736 19 1 11.9900 7.8522 -3.0955 20 1 14.0278 8.1627 -1.8177 21 1 12.9744 5.9806 -1.9085 22 6 7.5552 7.2111 -0.1079 23 6 6.2513 6.4144 -0.0215 24 7 5.3599 2.9189 0.0008 25 6 4.0564 2.5257 0.0010 26 6 3.4267 1.2805 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2078 2.3132 -0.0014 31 1 1.3043 4.5118 -0.0009 32 1 6.9056 4.8700 2.0522 33 1 7.6416 3.5616 1.0950 34 1 9.2485 5.1628 0.1168 35 1 9.3503 5.1891 1.8940 36 1 9.3918 8.7224 1.0039 37 1 10.2260 7.4466 1.9230 38 1 13.0792 9.0852 0.4214 39 1 8.0681 6.9692 -1.0388 40 1 7.3322 8.2777 -0.0818 41 1 5.6235 6.6500 -0.8808 42 1 5.7248 6.6765 0.8962 43 1 4.0152 0.3750 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601261359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:58 Heat of formation + Delta-G solvation = 7.675096 kcal Electronic energy + Delta-G solvation = -25954.503017 eV Core-core repulsion = 22194.375771 eV Total energy + Delta-G solvation = -3760.127246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.31245 -40.92035 -40.37519 -37.77027 -36.95873 -35.53106 -34.41500 -32.16934 -31.63907 -30.66782 -29.14478 -28.04135 -27.03027 -24.97134 -24.29251 -23.69893 -23.11330 -22.65492 -21.02628 -19.62234 -18.99479 -18.58371 -18.32235 -17.94615 -17.00040 -16.69371 -16.61586 -16.51754 -15.98899 -15.83401 -15.74195 -15.20955 -15.01021 -14.91735 -14.41751 -14.08194 -13.90037 -13.68550 -13.51863 -13.14913 -13.03809 -12.97284 -12.69515 -12.52022 -12.34938 -12.32069 -12.20027 -11.96017 -11.88178 -11.82943 -11.59913 -11.42775 -10.71588 -10.59454 -9.34795 -9.13730 -9.08724 -8.16009 -6.33869 -0.43220 0.18947 1.02089 1.34476 1.38767 1.39339 1.47373 1.93394 2.38027 2.43654 2.54124 3.10130 3.23161 3.41705 3.51537 3.72637 3.87491 3.92265 3.94777 4.07561 4.17668 4.27396 4.28180 4.35857 4.44058 4.48566 4.53596 4.64506 4.77237 4.85401 4.94048 4.97980 5.04832 5.06811 5.09237 5.12230 5.16105 5.25685 5.34488 5.42589 5.64868 5.75382 5.99660 6.19124 6.33435 6.39168 6.58525 6.84990 7.37336 8.86854 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.034709 B = 0.002407 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.508869 B =11629.786317 C =11919.000559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.329 6.329 3 C 0.139 3.861 4 C -0.172 4.172 5 C -0.038 4.038 6 C -0.057 4.057 7 O -0.235 6.235 8 C 0.437 3.563 9 N -0.433 5.433 10 C 0.079 3.921 11 C 0.067 3.933 12 N -0.542 5.542 13 C 0.201 3.799 14 C -0.556 4.556 15 H 0.056 0.944 16 C 0.015 3.985 17 N -0.923 5.923 18 Si 0.953 3.047 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.273 1.273 22 C 0.065 3.935 23 C 0.063 3.937 24 N -0.526 5.526 25 C 0.059 3.941 26 C -0.135 4.135 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.185 0.815 31 H 0.168 0.832 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.035 0.965 35 H 0.085 0.915 36 H 0.012 0.988 37 H 0.014 0.986 38 H 0.265 0.735 39 H 0.033 0.967 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.790 -13.245 -0.366 29.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.243 6.243 3 C 0.092 3.908 4 C -0.191 4.191 5 C -0.057 4.057 6 C -0.106 4.106 7 O -0.126 6.126 8 C 0.136 3.864 9 N -0.159 5.159 10 C -0.046 4.046 11 C -0.061 4.061 12 N -0.266 5.266 13 C 0.074 3.926 14 C -0.595 4.595 15 H 0.074 0.926 16 C -0.185 4.185 17 N -0.563 5.563 18 Si 0.778 3.222 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.198 1.198 22 C -0.064 4.064 23 C -0.063 4.063 24 N -0.264 5.264 25 C -0.053 4.053 26 C -0.156 4.156 27 H 0.091 0.909 28 H 0.137 0.863 29 H 0.091 0.909 30 H 0.202 0.798 31 H 0.186 0.814 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.054 0.946 35 H 0.103 0.897 36 H 0.030 0.970 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.107 0.893 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -26.048 -13.660 -0.281 29.414 hybrid contribution 0.787 0.672 -0.941 1.399 sum -25.261 -12.987 -1.222 28.430 Atomic orbital electron populations 1.23485 0.75594 1.06035 1.02973 1.86097 1.24088 1.25676 1.88421 1.18587 0.90874 0.85600 0.95724 1.21457 1.02067 0.89367 1.06193 1.20054 0.87128 1.00227 0.98268 1.20492 0.93525 0.84747 1.11884 1.84543 1.15851 1.35928 1.76277 1.23834 0.81814 0.87828 0.92917 1.59080 1.06571 1.07563 1.42703 1.22465 0.92228 1.01389 0.88543 1.21967 0.94452 0.88030 1.01698 1.62689 1.18127 1.04622 1.41144 1.19416 0.85659 0.92293 0.95183 1.21929 1.02027 1.27763 1.07816 0.92561 1.25743 0.98880 0.94794 0.99088 1.70040 1.18628 1.31427 1.36172 0.85687 0.77974 0.78449 0.80047 1.19662 1.20774 1.19775 1.21997 0.91721 0.99513 0.93200 1.22422 0.98256 0.81899 1.03708 1.70981 1.20076 1.07829 1.27470 1.19577 0.88187 0.94954 1.02602 1.19256 0.92326 0.95217 1.08793 0.90910 0.86310 0.90858 0.79783 0.81411 0.91742 0.88026 0.94643 0.89694 0.97035 0.96828 0.92602 0.94875 0.89320 0.87818 0.91130 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.33 -5.28 10.49 -93.25 -0.98 -6.26 16 3 C 0.14 2.63 6.68 22.47 0.15 2.78 16 4 C -0.17 -2.37 9.02 22.41 0.20 -2.17 16 5 C -0.04 -0.66 10.05 22.28 0.22 -0.44 16 6 C -0.06 -1.50 7.41 22.84 0.17 -1.33 16 7 O -0.24 -7.00 9.85 -14.89 -0.15 -7.14 16 8 C 0.44 14.24 7.37 179.31 1.32 15.56 16 9 N -0.43 -14.21 4.75 -819.39 -3.90 -18.11 16 10 C 0.08 2.53 5.50 86.31 0.48 3.01 16 11 C 0.07 2.56 5.24 86.31 0.45 3.01 16 12 N -0.54 -22.27 4.92 -900.29 -4.43 -26.70 16 13 C 0.20 10.16 5.14 85.55 0.44 10.60 16 14 C -0.56 -30.05 7.66 25.60 0.20 -29.85 16 15 H 0.06 3.03 5.82 -2.91 -0.02 3.01 16 16 C 0.01 0.82 5.46 84.65 0.46 1.28 16 17 N -0.92 -53.94 13.29 21.45 0.28 -53.65 16 18 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.06 2.35 5.32 86.31 0.46 2.81 16 23 C 0.06 1.90 4.97 86.31 0.43 2.33 16 24 N -0.53 -17.97 11.02 -306.54 -3.38 -21.35 16 25 C 0.06 1.78 7.23 39.28 0.28 2.06 16 26 C -0.14 -3.40 10.03 22.58 0.23 -3.17 16 27 H 0.07 0.22 7.65 -2.39 -0.02 0.20 16 28 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.07 0.22 7.65 -2.39 -0.02 0.20 16 30 H 0.19 0.94 6.26 -2.91 -0.02 0.92 16 31 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.10 3.16 7.88 -2.39 -0.02 3.14 16 34 H 0.04 1.51 6.61 -2.39 -0.02 1.49 16 35 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.01 0.62 8.12 -2.38 -0.02 0.60 16 37 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.03 1.35 6.78 -2.38 -0.02 1.34 16 40 H 0.09 3.08 8.12 -2.39 -0.02 3.06 16 41 H 0.10 2.76 8.01 -2.39 -0.02 2.74 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -68.03 350.10 -2.89 -70.92 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.03 Total: 8.84 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 6.60 Total: 7.66 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -11.42 Total: -119.81 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.12 Total: -13.41 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -68.03 -2.89 -70.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.591 kcal (2) G-P(sol) polarization free energy of solvation -68.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds