Wall clock time and date at job start Tue Mar 31 2020 11:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00272 * 2 1 4 4 H 1.08996 * 110.01598 * 28.60581 * 3 2 1 5 5 C 1.54275 * 110.02811 * 267.16594 * 3 2 1 6 6 C 1.54890 * 104.19178 * 264.32120 * 5 3 2 7 7 C 1.54886 * 102.75453 * 322.06227 * 6 5 3 8 8 C 1.53868 * 110.03463 * 149.99972 * 3 2 1 9 9 H 1.09001 * 110.03383 * 359.94565 * 8 3 2 10 10 S 1.81403 * 110.03425 * 238.56752 * 8 3 2 11 11 O 1.42101 * 110.53957 * 73.37166 * 10 8 3 12 12 O 1.42101 * 110.54113 * 296.62477 * 10 8 3 13 13 N 1.65596 * 104.45087 * 184.99570 * 10 8 3 14 14 C 1.46505 * 119.99655 * 90.00050 * 13 10 8 15 15 C 1.50703 * 109.47064 * 95.00018 * 14 13 10 16 16 H 1.07996 * 119.99751 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00001 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46999 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46942 * 119.99666 * 19 17 15 22 22 H 1.48504 * 109.46979 * 239.99580 * 19 17 15 23 23 C 1.46494 * 120.00265 * 269.99629 * 13 10 8 24 24 C 1.52988 * 109.47593 * 265.00204 * 23 13 10 25 25 C 1.53003 * 117.50404 * 243.62307 * 24 23 13 26 26 C 1.53002 * 60.00144 * 252.50989 * 25 24 23 27 27 H 1.09002 * 109.47002 * 59.99981 * 1 2 3 28 28 H 1.08995 * 109.47559 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47319 * 300.00509 * 1 2 3 30 30 H 1.08992 * 110.48827 * 23.00475 * 5 3 2 31 31 H 1.08999 * 110.48428 * 145.51697 * 5 3 2 32 32 H 1.09003 * 110.75381 * 80.37498 * 6 5 3 33 33 H 1.09006 * 110.75563 * 203.74158 * 6 5 3 34 34 H 1.09003 * 110.48553 * 279.26759 * 7 6 5 35 35 H 1.09001 * 110.49069 * 156.61680 * 7 6 5 36 36 H 1.09002 * 109.47068 * 214.99986 * 14 13 10 37 37 H 1.09001 * 109.47372 * 335.00074 * 14 13 10 38 38 H 0.97000 * 120.00333 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.46996 * 25.00920 * 23 13 10 40 40 H 1.09004 * 109.47165 * 144.99843 * 23 13 10 41 41 H 1.09000 * 115.55072 * 29.33061 * 24 23 13 42 42 H 1.08999 * 117.49365 * 359.97438 * 25 24 23 43 43 H 1.08996 * 117.50265 * 145.01825 * 25 24 23 44 44 H 1.08997 * 117.49483 * 252.50878 * 26 25 24 45 45 H 1.08996 * 117.50102 * 107.48623 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3407 2.0119 0.4903 5 6 2.2907 1.7589 -1.4477 6 6 3.7776 1.3920 -1.6793 7 6 4.4268 1.7153 -0.3107 8 6 3.3684 1.2777 0.7228 9 1 3.5837 0.2687 1.0745 10 16 3.3514 2.4323 2.1218 11 8 2.5631 1.9155 3.1852 12 8 3.1807 3.7669 1.6648 13 7 4.9003 2.3958 2.7065 14 6 5.9021 3.3291 2.1854 15 6 5.9757 4.5388 3.0811 16 1 5.3395 4.6059 3.9513 17 6 6.8544 5.5604 2.7892 18 7 7.6288 5.4790 1.7293 19 14 6.9460 7.0595 3.8999 20 1 5.9792 6.9079 5.0168 21 1 8.3204 7.1862 4.4480 22 1 6.6110 8.2765 3.1175 23 6 5.2687 1.4303 3.7449 24 6 5.1543 2.0914 5.1198 25 6 6.4370 2.2430 5.9399 26 6 5.3851 1.2100 6.3490 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6514 1.2201 -2.1468 31 1 2.1412 2.8341 -1.5463 32 1 3.8818 0.3330 -1.9157 33 1 4.2095 2.0091 -2.4672 34 1 4.6244 2.7838 -0.2252 35 1 5.3462 1.1446 -0.1802 36 1 6.8752 2.8388 2.1564 37 1 5.6213 3.6389 1.1788 38 1 8.2467 6.1978 1.5237 39 1 4.5984 0.5722 3.6974 40 1 6.2948 1.0989 3.5854 41 1 4.4086 2.8824 5.2006 42 1 7.3624 1.8713 5.5000 43 1 6.5356 3.1338 6.5602 44 1 4.7916 1.4214 7.2385 45 1 5.6185 0.1592 6.1781 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601336563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:40 Heat of formation + Delta-G solvation = -93.158833 kcal Electronic energy + Delta-G solvation = -26642.193671 eV Core-core repulsion = 22980.845137 eV Total energy + Delta-G solvation = -3661.348533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.14193 -37.44358 -36.61402 -35.80520 -35.31684 -34.66700 -32.32796 -29.15308 -28.40035 -27.79476 -26.33866 -25.34064 -22.40364 -21.84680 -20.91262 -20.78334 -20.23516 -18.30206 -17.44237 -16.80266 -16.34141 -16.30715 -15.60106 -15.39678 -15.25947 -14.68295 -14.41764 -14.05188 -13.94855 -13.78811 -13.17426 -12.72556 -12.60610 -12.42159 -12.11554 -11.90634 -11.73731 -11.58410 -11.48247 -11.44046 -11.19973 -11.11676 -11.05686 -10.99970 -10.91901 -10.72474 -10.68656 -10.51244 -10.17956 -10.03147 -9.80083 -9.71707 -9.57431 -9.28993 -8.38025 -8.02980 -6.00954 -4.01586 0.77081 3.23457 3.33554 3.41450 3.47146 3.60507 4.18796 4.36352 4.40267 4.46952 4.52149 4.72762 4.87108 5.13195 5.14408 5.21447 5.22337 5.26441 5.32368 5.38901 5.41887 5.49142 5.50344 5.60015 5.69019 5.78866 5.80375 5.87219 5.92813 6.02273 6.02635 6.12403 6.22235 6.33384 6.41079 6.54001 6.60307 6.84910 7.01959 7.22795 7.42369 7.62067 7.97941 8.27600 9.00559 9.62141 11.08186 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.005342 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.047511 B = 5239.985263 C = 6376.362146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.376 6.376 3 C 0.115 3.885 4 H 0.059 0.941 5 C -0.145 4.145 6 C -0.112 4.112 7 C -0.101 4.101 8 C -0.611 4.611 9 H 0.143 0.857 10 S 2.605 3.395 11 O -0.968 6.968 12 O -0.932 6.932 13 N -0.979 5.979 14 C 0.256 3.744 15 C -0.511 4.511 16 H 0.062 0.938 17 C 0.061 3.939 18 N -0.900 5.900 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.167 3.833 24 C -0.143 4.143 25 C -0.164 4.164 26 C -0.193 4.193 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.035 0.965 37 H 0.041 0.959 38 H 0.261 0.739 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 -11.638 -3.528 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.294 6.294 3 C 0.055 3.945 4 H 0.077 0.923 5 C -0.183 4.183 6 C -0.150 4.150 7 C -0.139 4.139 8 C -0.717 4.717 9 H 0.161 0.839 10 S 2.695 3.305 11 O -0.959 6.959 12 O -0.922 6.922 13 N -0.817 5.817 14 C 0.134 3.866 15 C -0.550 4.550 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.540 5.540 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C 0.040 3.960 24 C -0.163 4.163 25 C -0.201 4.201 26 C -0.230 4.230 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.557 -11.212 -3.314 14.488 hybrid contribution 0.249 0.642 0.276 0.742 sum -8.307 -10.570 -3.038 13.783 Atomic orbital electron populations 1.22883 0.81061 1.03004 1.00375 1.87957 1.19625 1.26900 1.94963 1.22240 0.91141 0.84905 0.96170 0.92324 1.22903 0.98146 1.01958 0.95343 1.22390 0.94154 1.01535 0.96907 1.22196 0.96129 1.02991 0.92552 1.31678 1.01653 1.19530 1.18826 0.83891 1.05337 0.74037 0.75602 0.75535 1.93538 1.69049 1.82293 1.50982 1.93631 1.84719 1.31018 1.82857 1.57428 1.29782 1.46169 1.48350 1.19170 0.86249 0.86623 0.94537 1.21492 1.20764 1.02286 1.10475 0.91957 1.24877 0.95587 0.98198 0.95366 1.69916 1.24365 1.33398 1.26297 0.86541 0.77609 0.83052 0.80846 1.19745 1.21127 1.21003 1.20604 1.00669 0.89440 0.85264 1.22631 1.00553 1.01658 0.91497 1.22866 0.93607 1.00096 1.03534 1.22960 1.04379 0.96514 0.99193 0.93823 0.89339 0.93569 0.90498 0.89842 0.91087 0.90692 0.89145 0.89610 0.94727 0.94160 0.92943 0.91451 0.90680 0.87730 0.88929 0.89353 0.89486 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.85 101.05 1.10 1.33 16 2 O -0.38 -5.11 10.25 -35.23 -0.36 -5.47 16 3 C 0.11 1.63 3.07 -25.61 -0.08 1.55 16 4 H 0.06 0.83 7.26 -51.93 -0.38 0.45 16 5 C -0.15 -1.79 6.57 -25.07 -0.16 -1.95 16 6 C -0.11 -1.37 6.91 -24.74 -0.17 -1.54 16 7 C -0.10 -1.46 5.85 -25.07 -0.15 -1.60 16 8 C -0.61 -9.26 3.45 -25.62 -0.09 -9.35 16 9 H 0.14 1.95 7.95 -51.93 -0.41 1.54 16 10 S 2.60 50.45 4.40 -107.50 -0.47 49.97 16 11 O -0.97 -20.07 16.99 -57.54 -0.98 -21.05 16 12 O -0.93 -21.41 16.59 -57.54 -0.95 -22.36 16 13 N -0.98 -19.54 2.60 -115.67 -0.30 -19.85 16 14 C 0.26 6.06 4.74 -5.19 -0.02 6.04 16 15 C -0.51 -13.82 8.96 -34.44 -0.31 -14.13 16 16 H 0.06 1.72 7.15 -52.49 -0.38 1.35 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.90 -25.64 13.29 55.43 0.74 -24.91 16 19 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.17 2.89 5.56 -4.05 -0.02 2.87 16 24 C -0.14 -2.60 5.16 -90.62 -0.47 -3.07 16 25 C -0.16 -2.72 10.18 -26.73 -0.27 -2.99 16 26 C -0.19 -2.83 10.25 -26.73 -0.27 -3.10 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.50 5.77 -51.93 -0.30 1.20 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.03 0.83 8.00 -51.93 -0.42 0.42 16 37 H 0.04 1.00 5.76 -51.93 -0.30 0.70 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 39 H 0.07 1.02 7.61 -51.93 -0.40 0.62 16 40 H 0.07 1.19 7.74 -51.93 -0.40 0.79 16 41 H 0.10 2.16 7.91 -51.93 -0.41 1.75 16 42 H 0.09 1.47 8.03 -51.93 -0.42 1.06 16 43 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -32.59 372.91 -10.33 -42.93 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.58 Total: 2.73 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -1.02 Total: -24.36 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.44 Total: -44.75 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -2.29 Total: -48.88 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 50.45 SS G_CDS: -0.47 Total: 49.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.59 -10.33 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.231 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds