Wall clock time and date at job start Tue Mar 31 2020 11:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00272 * 2 1 4 4 H 1.08996 * 110.01598 * 28.60581 * 3 2 1 5 5 C 1.54275 * 110.02811 * 267.16594 * 3 2 1 6 6 C 1.54890 * 104.19178 * 264.32120 * 5 3 2 7 7 C 1.54886 * 102.75453 * 322.06227 * 6 5 3 8 8 C 1.53868 * 110.03463 * 149.99972 * 3 2 1 9 9 H 1.09001 * 110.03383 * 359.94565 * 8 3 2 10 10 S 1.81403 * 110.03425 * 238.56752 * 8 3 2 11 11 O 1.42101 * 110.53957 * 73.37166 * 10 8 3 12 12 O 1.42101 * 110.54113 * 296.62477 * 10 8 3 13 13 N 1.65596 * 104.45087 * 184.99570 * 10 8 3 14 14 C 1.46505 * 119.99655 * 90.00050 * 13 10 8 15 15 C 1.50703 * 109.47064 * 95.00018 * 14 13 10 16 16 H 1.07996 * 119.99751 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00001 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46999 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46942 * 119.99666 * 19 17 15 22 22 H 1.48504 * 109.46979 * 239.99580 * 19 17 15 23 23 C 1.46494 * 120.00265 * 269.99629 * 13 10 8 24 24 C 1.52988 * 109.47593 * 265.00204 * 23 13 10 25 25 C 1.53003 * 117.50404 * 243.62307 * 24 23 13 26 26 C 1.53002 * 60.00144 * 252.50989 * 25 24 23 27 27 H 1.09002 * 109.47002 * 59.99981 * 1 2 3 28 28 H 1.08995 * 109.47559 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47319 * 300.00509 * 1 2 3 30 30 H 1.08992 * 110.48827 * 23.00475 * 5 3 2 31 31 H 1.08999 * 110.48428 * 145.51697 * 5 3 2 32 32 H 1.09003 * 110.75381 * 80.37498 * 6 5 3 33 33 H 1.09006 * 110.75563 * 203.74158 * 6 5 3 34 34 H 1.09003 * 110.48553 * 279.26759 * 7 6 5 35 35 H 1.09001 * 110.49069 * 156.61680 * 7 6 5 36 36 H 1.09002 * 109.47068 * 214.99986 * 14 13 10 37 37 H 1.09001 * 109.47372 * 335.00074 * 14 13 10 38 38 H 0.97000 * 120.00333 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.46996 * 25.00920 * 23 13 10 40 40 H 1.09004 * 109.47165 * 144.99843 * 23 13 10 41 41 H 1.09000 * 115.55072 * 29.33061 * 24 23 13 42 42 H 1.08999 * 117.49365 * 359.97438 * 25 24 23 43 43 H 1.08996 * 117.50265 * 145.01825 * 25 24 23 44 44 H 1.08997 * 117.49483 * 252.50878 * 26 25 24 45 45 H 1.08996 * 117.50102 * 107.48623 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3407 2.0119 0.4903 5 6 2.2907 1.7589 -1.4477 6 6 3.7776 1.3920 -1.6793 7 6 4.4268 1.7153 -0.3107 8 6 3.3684 1.2777 0.7228 9 1 3.5837 0.2687 1.0745 10 16 3.3514 2.4323 2.1218 11 8 2.5631 1.9155 3.1852 12 8 3.1807 3.7669 1.6648 13 7 4.9003 2.3958 2.7065 14 6 5.9021 3.3291 2.1854 15 6 5.9757 4.5388 3.0811 16 1 5.3395 4.6059 3.9513 17 6 6.8544 5.5604 2.7892 18 7 7.6288 5.4790 1.7293 19 14 6.9460 7.0595 3.8999 20 1 5.9792 6.9079 5.0168 21 1 8.3204 7.1862 4.4480 22 1 6.6110 8.2765 3.1175 23 6 5.2687 1.4303 3.7449 24 6 5.1543 2.0914 5.1198 25 6 6.4370 2.2430 5.9399 26 6 5.3851 1.2100 6.3490 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6514 1.2201 -2.1468 31 1 2.1412 2.8341 -1.5463 32 1 3.8818 0.3330 -1.9157 33 1 4.2095 2.0091 -2.4672 34 1 4.6244 2.7838 -0.2252 35 1 5.3462 1.1446 -0.1802 36 1 6.8752 2.8388 2.1564 37 1 5.6213 3.6389 1.1788 38 1 8.2467 6.1978 1.5237 39 1 4.5984 0.5722 3.6974 40 1 6.2948 1.0989 3.5854 41 1 4.4086 2.8824 5.2006 42 1 7.3624 1.8713 5.5000 43 1 6.5356 3.1338 6.5602 44 1 4.7916 1.4214 7.2385 45 1 5.6185 0.1592 6.1781 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601336563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:39 Heat of formation + Delta-G solvation = -114.662452 kcal Electronic energy + Delta-G solvation = -26643.126138 eV Core-core repulsion = 22980.845137 eV Total energy + Delta-G solvation = -3662.281000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.18939 -38.85244 -38.20483 -36.95731 -36.88606 -36.27145 -34.33730 -30.27279 -29.65556 -29.37200 -27.21398 -27.00903 -24.27964 -23.10365 -22.10720 -21.85118 -21.62084 -19.78336 -18.80372 -18.54126 -17.93860 -17.62042 -17.23379 -16.51445 -16.35680 -16.30442 -16.05675 -15.33360 -14.97584 -14.89299 -14.75993 -14.34880 -14.10772 -13.87686 -13.43864 -13.28129 -13.16020 -13.05247 -12.95137 -12.93263 -12.75916 -12.53816 -12.51235 -12.38695 -12.24172 -12.09977 -12.01075 -11.96046 -11.68396 -11.51183 -11.46595 -11.18518 -10.71694 -10.64829 -10.48085 -9.69628 -8.12874 -6.18801 -0.74053 1.36692 1.39849 1.50008 1.73538 2.44407 2.54395 2.90687 3.07135 3.09769 3.19006 3.27776 3.49527 3.64088 3.85965 4.02278 4.05890 4.13190 4.23289 4.30339 4.31653 4.36304 4.48519 4.54398 4.56607 4.68339 4.74917 4.82245 4.84278 4.88961 4.89791 5.00319 5.07525 5.10804 5.14569 5.27311 5.33357 5.36145 5.41861 5.56339 5.80068 5.99052 6.05195 6.23258 6.87563 7.47151 8.95070 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.005342 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.047511 B = 5239.985263 C = 6376.362146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.386 6.386 3 C 0.106 3.894 4 H 0.052 0.948 5 C -0.145 4.145 6 C -0.106 4.106 7 C -0.107 4.107 8 C -0.582 4.582 9 H 0.166 0.834 10 S 2.599 3.401 11 O -0.990 6.990 12 O -0.981 6.981 13 N -0.984 5.984 14 C 0.271 3.729 15 C -0.521 4.521 16 H 0.046 0.954 17 C 0.016 3.984 18 N -0.924 5.924 19 Si 0.941 3.059 20 H -0.277 1.277 21 H -0.272 1.272 22 H -0.282 1.282 23 C 0.160 3.840 24 C -0.177 4.177 25 C -0.172 4.172 26 C -0.158 4.158 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.041 0.959 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.031 0.969 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.320 -13.823 -4.145 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.305 6.305 3 C 0.046 3.954 4 H 0.070 0.930 5 C -0.183 4.183 6 C -0.144 4.144 7 C -0.146 4.146 8 C -0.693 4.693 9 H 0.184 0.816 10 S 2.696 3.304 11 O -0.980 6.980 12 O -0.971 6.971 13 N -0.821 5.821 14 C 0.148 3.852 15 C -0.560 4.560 16 H 0.064 0.936 17 C -0.183 4.183 18 N -0.566 5.566 19 Si 0.767 3.233 20 H -0.202 1.202 21 H -0.198 1.198 22 H -0.208 1.208 23 C 0.035 3.965 24 C -0.198 4.198 25 C -0.209 4.209 26 C -0.196 4.196 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.060 0.940 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.773 -13.372 -3.865 16.454 hybrid contribution 0.213 1.251 0.457 1.348 sum -8.561 -12.121 -3.409 15.226 Atomic orbital electron populations 1.23167 0.79341 1.04795 1.01093 1.87920 1.21481 1.26020 1.95094 1.22333 0.90305 0.85543 0.97186 0.93002 1.22946 0.98782 1.02167 0.94420 1.22426 0.93618 1.02853 0.95529 1.22282 0.96773 1.01569 0.93932 1.31315 1.03323 1.18345 1.16319 0.81625 1.05206 0.73468 0.75531 0.76222 1.93497 1.69331 1.82341 1.52843 1.93565 1.85231 1.34719 1.83627 1.57236 1.28819 1.46378 1.49656 1.18749 0.86815 0.86269 0.93324 1.21758 1.20124 1.03798 1.10358 0.93568 1.25522 0.95608 1.00538 0.96607 1.69983 1.24980 1.34242 1.27361 0.85767 0.77968 0.80262 0.79264 1.20166 1.19762 1.20807 1.20871 1.02232 0.89378 0.84041 1.22599 1.00805 1.02763 0.93600 1.22901 0.93704 1.00903 1.03431 1.23069 1.01922 0.97264 0.97315 0.92066 0.87054 0.93998 0.88128 0.90114 0.89354 0.89449 0.91815 0.88154 0.95120 0.95427 0.92712 0.89001 0.89096 0.91420 0.88234 0.90356 0.88487 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 10.85 113.37 1.23 1.44 16 2 O -0.39 -9.48 10.25 -148.98 -1.53 -11.00 16 3 C 0.11 2.84 3.07 31.32 0.10 2.94 16 4 H 0.05 1.45 7.26 -2.39 -0.02 1.43 16 5 C -0.15 -3.25 6.57 31.67 0.21 -3.04 16 6 C -0.11 -2.32 6.91 31.88 0.22 -2.10 16 7 C -0.11 -2.98 5.85 31.67 0.19 -2.80 16 8 C -0.58 -16.92 3.45 31.32 0.11 -16.81 16 9 H 0.17 4.10 7.95 -2.39 -0.02 4.09 16 10 S 2.60 102.84 4.40 -56.49 -0.25 102.59 16 11 O -0.99 -41.77 16.99 -127.65 -2.17 -43.94 16 12 O -0.98 -47.27 16.59 -127.65 -2.12 -49.39 16 13 N -0.98 -39.96 2.60 -519.86 -1.35 -41.31 16 14 C 0.27 13.23 4.74 85.63 0.41 13.64 16 15 C -0.52 -29.10 8.96 25.60 0.23 -28.87 16 16 H 0.05 2.67 7.15 -2.91 -0.02 2.65 16 17 C 0.02 0.89 5.46 84.65 0.46 1.36 16 18 N -0.92 -53.45 13.29 21.45 0.28 -53.17 16 19 Si 0.94 45.37 29.54 68.60 2.03 47.39 16 20 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 23 C 0.16 5.47 5.56 86.38 0.48 5.95 16 24 C -0.18 -6.48 5.16 -10.79 -0.06 -6.54 16 25 C -0.17 -5.65 10.18 30.60 0.31 -5.34 16 26 C -0.16 -4.35 10.25 30.60 0.31 -4.04 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 0.78 8.10 -2.39 -0.02 0.76 16 30 H 0.10 1.78 8.07 -2.39 -0.02 1.76 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.06 2.15 5.77 -2.39 -0.01 2.14 16 35 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.03 1.51 8.00 -2.39 -0.02 1.49 16 37 H 0.03 1.42 5.76 -2.39 -0.01 1.41 16 38 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 39 H 0.09 2.63 7.61 -2.39 -0.02 2.61 16 40 H 0.09 2.78 7.74 -2.39 -0.02 2.76 16 41 H 0.07 2.95 7.91 -2.39 -0.02 2.93 16 42 H 0.10 3.09 8.03 -2.39 -0.02 3.07 16 43 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -71.93 372.91 0.05 -71.88 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.96 Total: 21.16 kcal Atomic # 6 Polarization: -48.41 SS G_CDS: 4.19 Total: -44.22 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -1.06 Total: -94.48 kcal Atomic # 8 Polarization: -98.52 SS G_CDS: -5.81 Total: -104.33 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 102.84 SS G_CDS: -0.25 Total: 102.59 kcal Total: -71.93 0.05 -71.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.784 kcal (2) G-P(sol) polarization free energy of solvation -71.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds