Wall clock time and date at job start Tue Mar 31 2020 11:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00002 * 2 1 4 4 H 1.09000 * 110.01709 * 28.60589 * 3 2 1 5 5 C 1.54268 * 110.07467 * 267.18844 * 3 2 1 6 6 C 1.54893 * 104.19499 * 264.30203 * 5 3 2 7 7 C 1.54959 * 102.77552 * 322.08351 * 6 5 3 8 8 C 1.53875 * 110.03387 * 149.99512 * 3 2 1 9 9 H 1.09002 * 110.02692 * 0.02562 * 8 3 2 10 10 S 1.81399 * 110.03717 * 238.62035 * 8 3 2 11 11 O 1.42103 * 110.54023 * 74.06036 * 10 8 3 12 12 O 1.42102 * 110.54103 * 297.31689 * 10 8 3 13 13 N 1.65592 * 104.45189 * 185.68980 * 10 8 3 14 14 C 1.46928 * 120.63280 * 89.99818 * 13 10 8 15 15 C 1.53187 * 108.77585 * 126.36622 * 14 13 10 16 16 C 1.53044 * 109.31179 * 54.64017 * 15 14 13 17 17 C 1.50699 * 109.46012 * 178.62705 * 16 15 14 18 18 H 1.07997 * 120.00283 * 35.06423 * 17 16 15 19 19 C 1.37882 * 119.99657 * 215.06048 * 17 16 15 20 20 N 1.31515 * 119.99615 * 186.20792 * 19 17 16 21 21 Si 1.86796 * 120.00102 * 6.20733 * 19 17 16 22 22 H 1.48507 * 109.47012 * 84.77019 * 21 19 17 23 23 H 1.48497 * 109.47054 * 204.76783 * 21 19 17 24 24 H 1.48496 * 109.47583 * 324.76943 * 21 19 17 25 25 C 1.53042 * 109.53716 * 298.63213 * 16 15 14 26 26 C 1.46927 * 120.63322 * 269.97718 * 13 10 8 27 27 H 1.08998 * 109.47676 * 300.00142 * 1 2 3 28 28 H 1.09008 * 109.46704 * 60.00246 * 1 2 3 29 29 H 1.09006 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.08997 * 110.48226 * 22.98205 * 5 3 2 31 31 H 1.09002 * 110.48254 * 145.49151 * 5 3 2 32 32 H 1.09005 * 110.75090 * 80.37206 * 6 5 3 33 33 H 1.08996 * 110.75454 * 203.73916 * 6 5 3 34 34 H 1.08998 * 110.48062 * 279.23327 * 7 6 5 35 35 H 1.09001 * 110.52703 * 156.56786 * 7 6 5 36 36 H 1.09008 * 109.58456 * 6.58618 * 14 13 10 37 37 H 1.08997 * 109.59035 * 246.16141 * 14 13 10 38 38 H 1.09003 * 109.50351 * 294.69113 * 15 14 13 39 39 H 1.09002 * 109.49979 * 174.58764 * 15 14 13 40 40 H 1.09003 * 109.46085 * 58.65283 * 16 15 14 41 41 H 0.97003 * 119.99936 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.50161 * 181.31591 * 25 16 15 43 43 H 1.08999 * 109.49585 * 301.41445 * 25 16 15 44 44 H 1.09004 * 109.58237 * 353.41601 * 26 13 10 45 45 H 1.08995 * 109.58773 * 113.83945 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 0.4903 5 6 2.2905 1.7603 -1.4472 6 6 3.7776 1.3942 -1.6791 7 6 4.4273 1.7160 -0.3096 8 6 3.3683 1.2778 0.7229 9 1 3.5842 0.2685 1.0734 10 16 3.3508 2.4313 2.1229 11 8 2.5756 1.9062 3.1918 12 8 3.1635 3.7645 1.6681 13 7 4.9043 2.4095 2.6957 14 6 5.9071 3.3493 2.1760 15 6 6.5396 4.0967 3.3541 16 6 7.0901 3.0829 4.3598 17 6 7.7432 3.8146 5.5039 18 1 7.3339 4.7527 5.8489 19 6 8.8631 3.2865 6.1104 20 7 9.3611 3.8592 7.1845 21 14 9.6731 1.7575 5.4066 22 1 10.6120 2.1483 4.3244 23 1 10.4202 1.0543 6.4802 24 1 8.6311 0.8543 4.8555 25 6 5.9455 2.2191 4.8944 26 6 5.3061 1.4505 3.7337 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6514 1.2217 -2.1468 31 1 2.1405 2.8355 -1.5449 32 1 3.8822 0.3354 -1.9164 33 1 4.2092 2.0121 -2.4665 34 1 4.6253 2.7844 -0.2231 35 1 5.3466 1.1450 -0.1791 36 1 5.4267 4.0627 1.5062 37 1 6.6777 2.7996 1.6357 38 1 5.7856 4.7170 3.8386 39 1 7.3517 4.7269 2.9913 40 1 7.8262 2.4467 3.8682 41 1 10.1488 3.4875 7.6114 42 1 6.3345 1.5129 5.6278 43 1 5.1971 2.8572 5.3643 44 1 4.4293 0.9109 4.0918 45 1 6.0278 0.7458 3.3205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601388233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:19 Heat of formation + Delta-G solvation = -127.266194 kcal Electronic energy + Delta-G solvation = -26408.839665 eV Core-core repulsion = 22746.012126 eV Total energy + Delta-G solvation = -3662.827540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.46077 -37.97953 -37.17959 -36.15366 -35.88375 -33.36055 -31.27246 -30.46709 -29.51474 -28.69325 -26.59194 -25.98945 -22.73377 -22.30466 -21.31202 -21.11979 -19.56234 -18.63556 -17.79875 -17.20737 -16.80673 -16.75506 -15.95279 -15.68446 -15.41807 -14.42165 -14.32172 -14.29676 -14.12985 -13.73712 -13.21768 -13.11708 -13.04435 -12.82315 -12.45659 -12.41479 -12.24457 -12.15433 -12.02959 -11.85776 -11.52200 -11.45694 -11.31408 -11.25877 -11.02903 -10.99768 -10.79039 -10.61430 -10.45666 -9.99144 -9.91123 -9.70846 -9.31439 -9.15722 -8.53936 -8.43329 -6.07010 -4.05542 0.22760 2.67029 3.27084 3.28204 3.35557 3.36874 3.76407 3.95774 4.03530 4.34493 4.41523 4.42107 4.73866 4.81006 4.95165 4.97402 5.02556 5.07875 5.19544 5.21903 5.29966 5.35481 5.40016 5.51693 5.62582 5.67244 5.69060 5.71806 5.77506 5.92254 5.97922 6.07614 6.17722 6.28960 6.37677 6.73450 6.75761 6.81114 6.98818 7.03096 7.35566 7.48502 7.78118 8.54525 8.99579 9.56308 11.06624 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.003733 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.163762 B = 7498.258643 C = 7633.088995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.374 6.374 3 C 0.114 3.886 4 H 0.060 0.940 5 C -0.146 4.146 6 C -0.112 4.112 7 C -0.100 4.100 8 C -0.607 4.607 9 H 0.150 0.850 10 S 2.608 3.392 11 O -0.953 6.953 12 O -0.951 6.951 13 N -0.987 5.987 14 C 0.115 3.885 15 C -0.115 4.115 16 C 0.016 3.984 17 C -0.511 4.511 18 H 0.072 0.928 19 C 0.069 3.931 20 N -0.902 5.902 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.264 1.264 25 C -0.121 4.121 26 C 0.113 3.887 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.263 0.737 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.731 -7.601 -18.995 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.293 6.293 3 C 0.054 3.946 4 H 0.078 0.922 5 C -0.184 4.184 6 C -0.150 4.150 7 C -0.138 4.138 8 C -0.714 4.714 9 H 0.168 0.832 10 S 2.700 3.300 11 O -0.943 6.943 12 O -0.941 6.941 13 N -0.826 5.826 14 C -0.010 4.010 15 C -0.154 4.154 16 C -0.003 4.003 17 C -0.549 4.549 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.539 5.539 21 Si 0.706 3.294 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.189 1.189 25 C -0.160 4.160 26 C -0.012 4.012 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.190 -7.289 -18.501 24.429 hybrid contribution 0.636 -1.187 -0.513 1.441 sum -13.555 -8.476 -19.014 24.842 Atomic orbital electron populations 1.22915 0.80701 1.03309 1.00440 1.87973 1.19912 1.26484 1.94937 1.22234 0.90913 0.85329 0.96116 0.92173 1.22910 0.98102 1.01938 0.95431 1.22408 0.94190 1.01993 0.96424 1.22154 0.96492 1.02018 0.93133 1.31606 1.02031 1.19633 1.18119 0.83193 1.05184 0.73705 0.75567 0.75524 1.93582 1.68719 1.81716 1.50321 1.93573 1.84754 1.32423 1.83382 1.57494 1.28481 1.46272 1.50381 1.21691 0.90659 0.91107 0.97553 1.21906 0.99575 0.98667 0.95229 1.19106 0.93162 0.93461 0.94571 1.21018 1.11033 1.08214 1.14592 0.90974 1.25091 0.96971 0.96728 0.94448 1.69922 1.23412 1.41186 1.19425 0.86851 0.79751 0.84000 0.78823 1.20312 1.21770 1.18911 1.22157 0.99320 0.99023 0.95517 1.21699 0.99868 0.90721 0.88924 0.93459 0.93711 0.89101 0.90199 0.89853 0.90744 0.90598 0.90042 0.89377 0.89958 0.91940 0.92286 0.91297 0.95006 0.92718 0.91699 0.92175 0.90091 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.85 101.05 1.10 1.28 16 2 O -0.37 -4.14 10.25 -35.23 -0.36 -4.50 16 3 C 0.11 1.22 3.06 -25.61 -0.08 1.15 16 4 H 0.06 0.63 7.26 -51.93 -0.38 0.25 16 5 C -0.15 -1.26 6.57 -25.07 -0.16 -1.43 16 6 C -0.11 -0.92 6.91 -24.70 -0.17 -1.09 16 7 C -0.10 -0.94 5.89 -25.03 -0.15 -1.09 16 8 C -0.61 -6.79 3.45 -25.61 -0.09 -6.88 16 9 H 0.15 1.57 7.95 -51.93 -0.41 1.16 16 10 S 2.61 38.68 4.53 -107.50 -0.49 38.19 16 11 O -0.95 -16.94 16.59 -57.54 -0.95 -17.89 16 12 O -0.95 -15.81 16.22 -57.54 -0.93 -16.74 16 13 N -0.99 -15.37 3.07 -113.52 -0.35 -15.72 16 14 C 0.11 1.75 5.65 -3.71 -0.02 1.73 16 15 C -0.11 -2.20 5.34 -26.61 -0.14 -2.34 16 16 C 0.02 0.36 1.75 -91.73 -0.16 0.20 16 17 C -0.51 -13.92 8.85 -34.44 -0.30 -14.23 16 18 H 0.07 2.17 8.06 -52.49 -0.42 1.74 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 21 Si 0.88 20.86 27.02 -169.99 -4.59 16.27 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.26 -5.87 6.77 56.52 0.38 -5.49 16 25 C -0.12 -2.47 5.34 -26.61 -0.14 -2.61 16 26 C 0.11 1.86 6.43 -3.71 -0.02 1.83 16 27 H 0.05 0.37 8.10 -51.93 -0.42 -0.05 16 28 H 0.04 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.76 6.75 -51.93 -0.35 0.41 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.13 6.54 -51.92 -0.34 0.79 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.03 0.70 5.24 -51.93 -0.27 0.43 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.08 1.25 6.86 -51.93 -0.36 0.90 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -33.61 359.04 -9.54 -43.15 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.60 Total: -0.06 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -0.45 Total: -21.64 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.43 Total: -42.18 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -2.25 Total: -39.14 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.59 Total: 16.27 kcal Atomic # 16 Polarization: 38.68 SS G_CDS: -0.49 Total: 38.19 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.61 -9.54 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601388233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.118 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds