Wall clock time and date at job start Tue Mar 31 2020 11:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00002 * 2 1 4 4 H 1.09000 * 110.01709 * 28.60589 * 3 2 1 5 5 C 1.54268 * 110.07467 * 267.18844 * 3 2 1 6 6 C 1.54893 * 104.19499 * 264.30203 * 5 3 2 7 7 C 1.54959 * 102.77552 * 322.08351 * 6 5 3 8 8 C 1.53875 * 110.03387 * 149.99512 * 3 2 1 9 9 H 1.09002 * 110.02692 * 0.02562 * 8 3 2 10 10 S 1.81399 * 110.03717 * 238.62035 * 8 3 2 11 11 O 1.42103 * 110.54023 * 74.06036 * 10 8 3 12 12 O 1.42102 * 110.54103 * 297.31689 * 10 8 3 13 13 N 1.65592 * 104.45189 * 185.68980 * 10 8 3 14 14 C 1.46928 * 120.63280 * 89.99818 * 13 10 8 15 15 C 1.53187 * 108.77585 * 126.36622 * 14 13 10 16 16 C 1.53044 * 109.31179 * 54.64017 * 15 14 13 17 17 C 1.50699 * 109.46012 * 178.62705 * 16 15 14 18 18 H 1.07997 * 120.00283 * 35.06423 * 17 16 15 19 19 C 1.37882 * 119.99657 * 215.06048 * 17 16 15 20 20 N 1.31515 * 119.99615 * 186.20792 * 19 17 16 21 21 Si 1.86796 * 120.00102 * 6.20733 * 19 17 16 22 22 H 1.48507 * 109.47012 * 84.77019 * 21 19 17 23 23 H 1.48497 * 109.47054 * 204.76783 * 21 19 17 24 24 H 1.48496 * 109.47583 * 324.76943 * 21 19 17 25 25 C 1.53042 * 109.53716 * 298.63213 * 16 15 14 26 26 C 1.46927 * 120.63322 * 269.97718 * 13 10 8 27 27 H 1.08998 * 109.47676 * 300.00142 * 1 2 3 28 28 H 1.09008 * 109.46704 * 60.00246 * 1 2 3 29 29 H 1.09006 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.08997 * 110.48226 * 22.98205 * 5 3 2 31 31 H 1.09002 * 110.48254 * 145.49151 * 5 3 2 32 32 H 1.09005 * 110.75090 * 80.37206 * 6 5 3 33 33 H 1.08996 * 110.75454 * 203.73916 * 6 5 3 34 34 H 1.08998 * 110.48062 * 279.23327 * 7 6 5 35 35 H 1.09001 * 110.52703 * 156.56786 * 7 6 5 36 36 H 1.09008 * 109.58456 * 6.58618 * 14 13 10 37 37 H 1.08997 * 109.59035 * 246.16141 * 14 13 10 38 38 H 1.09003 * 109.50351 * 294.69113 * 15 14 13 39 39 H 1.09002 * 109.49979 * 174.58764 * 15 14 13 40 40 H 1.09003 * 109.46085 * 58.65283 * 16 15 14 41 41 H 0.97003 * 119.99936 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.50161 * 181.31591 * 25 16 15 43 43 H 1.08999 * 109.49585 * 301.41445 * 25 16 15 44 44 H 1.09004 * 109.58237 * 353.41601 * 26 13 10 45 45 H 1.08995 * 109.58773 * 113.83945 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 0.4903 5 6 2.2905 1.7603 -1.4472 6 6 3.7776 1.3942 -1.6791 7 6 4.4273 1.7160 -0.3096 8 6 3.3683 1.2778 0.7229 9 1 3.5842 0.2685 1.0734 10 16 3.3508 2.4313 2.1229 11 8 2.5756 1.9062 3.1918 12 8 3.1635 3.7645 1.6681 13 7 4.9043 2.4095 2.6957 14 6 5.9071 3.3493 2.1760 15 6 6.5396 4.0967 3.3541 16 6 7.0901 3.0829 4.3598 17 6 7.7432 3.8146 5.5039 18 1 7.3339 4.7527 5.8489 19 6 8.8631 3.2865 6.1104 20 7 9.3611 3.8592 7.1845 21 14 9.6731 1.7575 5.4066 22 1 10.6120 2.1483 4.3244 23 1 10.4202 1.0543 6.4802 24 1 8.6311 0.8543 4.8555 25 6 5.9455 2.2191 4.8944 26 6 5.3061 1.4505 3.7337 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6514 1.2217 -2.1468 31 1 2.1405 2.8355 -1.5449 32 1 3.8822 0.3354 -1.9164 33 1 4.2092 2.0121 -2.4665 34 1 4.6253 2.7844 -0.2231 35 1 5.3466 1.1450 -0.1791 36 1 5.4267 4.0627 1.5062 37 1 6.6777 2.7996 1.6357 38 1 5.7856 4.7170 3.8386 39 1 7.3517 4.7269 2.9913 40 1 7.8262 2.4467 3.8682 41 1 10.1488 3.4875 7.6114 42 1 6.3345 1.5129 5.6278 43 1 5.1971 2.8572 5.3643 44 1 4.4293 0.9109 4.0918 45 1 6.0278 0.7458 3.3205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601388233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:19 Heat of formation + Delta-G solvation = -151.572550 kcal Electronic energy + Delta-G solvation = -26409.893668 eV Core-core repulsion = 22746.012126 eV Total energy + Delta-G solvation = -3663.881542 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.19303 -39.42268 -38.39941 -37.13220 -36.88032 -35.19669 -33.11794 -31.87218 -30.27046 -29.38229 -27.81103 -27.23590 -24.16641 -23.90876 -22.14117 -21.81514 -21.07482 -19.80212 -18.98026 -18.91775 -18.15544 -17.66679 -17.06861 -16.37716 -16.31851 -16.28447 -15.51253 -15.26128 -14.98223 -14.91934 -14.80356 -14.54281 -14.45546 -14.07588 -13.87317 -13.56567 -13.31493 -13.12547 -12.96293 -12.90459 -12.86185 -12.69518 -12.51742 -12.48549 -12.09450 -12.02122 -11.95890 -11.76622 -11.68324 -11.53012 -11.42677 -11.06438 -10.92795 -10.71155 -10.60064 -9.80937 -8.24188 -6.28563 -0.89946 1.40582 1.42745 1.52468 1.54128 2.41096 2.49689 2.83434 2.96993 3.11153 3.22178 3.41482 3.62455 3.76564 4.06941 4.12766 4.21180 4.28446 4.32657 4.36083 4.38882 4.47101 4.52268 4.63559 4.64583 4.70246 4.71897 4.77489 4.81388 4.88728 4.91448 4.95202 5.05883 5.10562 5.14580 5.23680 5.35149 5.46703 5.55124 5.66192 5.74718 5.84110 6.04983 6.38619 6.79407 7.37386 8.93527 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.003733 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.163762 B = 7498.258643 C = 7633.088995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.390 6.390 3 C 0.100 3.900 4 H 0.054 0.946 5 C -0.146 4.146 6 C -0.109 4.109 7 C -0.106 4.106 8 C -0.578 4.578 9 H 0.164 0.836 10 S 2.605 3.395 11 O -0.993 6.993 12 O -0.977 6.977 13 N -0.993 5.993 14 C 0.120 3.880 15 C -0.117 4.117 16 C 0.015 3.985 17 C -0.518 4.518 18 H 0.018 0.982 19 C 0.004 3.996 20 N -0.958 5.958 21 Si 0.949 3.051 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.231 1.231 25 C -0.123 4.123 26 C 0.119 3.881 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.264 0.736 42 H 0.057 0.943 43 H 0.032 0.968 44 H 0.089 0.911 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.651 -10.470 -22.980 28.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.309 6.309 3 C 0.041 3.959 4 H 0.072 0.928 5 C -0.184 4.184 6 C -0.147 4.147 7 C -0.145 4.145 8 C -0.691 4.691 9 H 0.181 0.819 10 S 2.703 3.297 11 O -0.984 6.984 12 O -0.968 6.968 13 N -0.832 5.832 14 C -0.005 4.005 15 C -0.156 4.156 16 C -0.004 4.004 17 C -0.556 4.556 18 H 0.037 0.963 19 C -0.192 4.192 20 N -0.598 5.598 21 Si 0.772 3.228 22 H -0.188 1.188 23 H -0.223 1.223 24 H -0.154 1.154 25 C -0.163 4.163 26 C -0.006 4.006 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.051 0.949 44 H 0.107 0.893 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.139 -10.116 -22.463 28.405 hybrid contribution 0.485 -0.184 0.768 0.927 sum -13.654 -10.300 -21.695 27.626 Atomic orbital electron populations 1.23139 0.79416 1.04643 1.01091 1.87932 1.21385 1.26468 1.95112 1.22440 0.90523 0.85473 0.97508 0.92767 1.22959 0.99018 1.02426 0.93987 1.22442 0.93420 1.02695 0.96109 1.22359 0.96642 1.02495 0.92978 1.31299 1.03617 1.18172 1.15963 0.81866 1.05068 0.72924 0.75643 0.76054 1.93528 1.69589 1.82145 1.53095 1.93533 1.84857 1.34655 1.83743 1.57420 1.28447 1.46422 1.50878 1.21720 0.91477 0.91548 0.95737 1.21838 0.99227 0.98252 0.96296 1.19098 0.93796 0.94075 0.93387 1.21350 1.11283 1.06778 1.16190 0.96338 1.26115 0.97658 1.00884 0.94578 1.70109 1.24351 1.43770 1.21579 0.85709 0.79300 0.79577 0.78199 1.18751 1.22258 1.15351 1.22045 0.98301 0.98709 0.97231 1.21619 1.00759 0.90579 0.87657 0.93960 0.91984 0.87510 0.88999 0.89335 0.90276 0.88763 0.89885 0.87374 0.88359 0.88184 0.95008 0.91100 0.93378 0.92743 0.92399 0.94899 0.89280 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 10.85 113.37 1.23 1.41 16 2 O -0.39 -7.59 10.25 -148.98 -1.53 -9.12 16 3 C 0.10 1.90 3.06 31.32 0.10 2.00 16 4 H 0.05 1.07 7.26 -2.39 -0.02 1.05 16 5 C -0.15 -2.01 6.57 31.67 0.21 -1.81 16 6 C -0.11 -1.29 6.91 31.91 0.22 -1.07 16 7 C -0.11 -1.53 5.89 31.69 0.19 -1.34 16 8 C -0.58 -11.07 3.45 31.32 0.11 -10.96 16 9 H 0.16 2.78 7.95 -2.39 -0.02 2.76 16 10 S 2.60 73.54 4.53 -56.49 -0.26 73.29 16 11 O -0.99 -35.10 16.59 -127.65 -2.12 -37.22 16 12 O -0.98 -31.72 16.22 -127.65 -2.07 -33.79 16 13 N -0.99 -28.66 3.07 -513.07 -1.57 -30.24 16 14 C 0.12 3.32 5.65 86.36 0.49 3.80 16 15 C -0.12 -4.46 5.34 30.67 0.16 -4.30 16 16 C 0.02 0.68 1.75 -11.51 -0.02 0.66 16 17 C -0.52 -29.45 8.85 25.60 0.23 -29.22 16 18 H 0.02 1.19 8.06 -2.91 -0.02 1.17 16 19 C 0.00 0.20 5.47 84.66 0.46 0.67 16 20 N -0.96 -60.37 13.96 21.45 0.30 -60.07 16 21 Si 0.95 42.26 27.02 68.60 1.85 44.11 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 23 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 24 H -0.23 -8.96 6.77 99.48 0.67 -8.28 16 25 C -0.12 -5.01 5.34 30.67 0.16 -4.85 16 26 C 0.12 3.61 6.43 86.36 0.56 4.17 16 27 H 0.04 0.62 8.10 -2.39 -0.02 0.60 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.09 1.05 8.07 -2.39 -0.02 1.03 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 1.21 6.75 -2.39 -0.02 1.19 16 35 H 0.11 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.10 2.44 6.54 -2.38 -0.02 2.43 16 37 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.05 1.97 5.24 -2.39 -0.01 1.95 16 41 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.09 2.59 6.86 -2.38 -0.02 2.57 16 45 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -77.53 359.04 -0.38 -77.91 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.92 Total: 15.97 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 4.09 Total: -40.84 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -1.28 Total: -90.31 kcal Atomic # 8 Polarization: -74.42 SS G_CDS: -5.72 Total: -80.13 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.85 Total: 44.11 kcal Atomic # 16 Polarization: 73.54 SS G_CDS: -0.26 Total: 73.29 kcal Total: -77.53 -0.38 -77.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601388233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.664 kcal (2) G-P(sol) polarization free energy of solvation -77.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds