Wall clock time and date at job start Tue Mar 31 2020 11:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42890 * 114.00432 * 2 1 4 4 H 1.09007 * 109.47182 * 330.00258 * 3 2 1 5 5 C 1.53000 * 109.47284 * 89.99777 * 3 2 1 6 6 C 1.53006 * 109.47024 * 60.00172 * 5 3 2 7 7 C 1.52998 * 109.47084 * 60.00101 * 6 5 3 8 8 C 1.52999 * 109.47217 * 300.00396 * 7 6 5 9 9 C 1.52996 * 109.47475 * 59.99814 * 8 7 6 10 10 H 1.08992 * 109.47371 * 60.00223 * 9 8 7 11 11 S 1.81405 * 109.47553 * 180.02562 * 9 8 7 12 12 O 1.42096 * 110.54635 * 189.81946 * 11 9 8 13 13 O 1.42108 * 110.53724 * 53.06833 * 11 9 8 14 14 N 1.65598 * 104.44607 * 301.44628 * 11 9 8 15 15 C 1.46508 * 119.99766 * 61.58521 * 14 11 9 16 16 C 1.53010 * 109.46796 * 152.61547 * 15 14 11 17 17 C 1.50697 * 115.54663 * 301.09939 * 16 15 14 18 18 H 1.07996 * 120.00448 * 99.15843 * 17 16 15 19 19 C 1.37884 * 119.99820 * 278.87792 * 17 16 15 20 20 N 1.31513 * 120.00179 * 355.21297 * 19 17 16 21 21 Si 1.86799 * 119.99844 * 175.20987 * 19 17 16 22 22 H 1.48506 * 109.47123 * 60.00075 * 21 19 17 23 23 H 1.48497 * 109.47185 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47367 * 299.99997 * 21 19 17 25 25 C 1.52997 * 117.51806 * 86.80003 * 16 15 14 26 26 C 1.52990 * 117.49751 * 155.43131 * 16 15 14 27 27 H 1.09005 * 109.46978 * 299.99981 * 1 2 3 28 28 H 1.09001 * 109.47442 * 59.99639 * 1 2 3 29 29 H 1.09002 * 109.47509 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47416 * 300.00213 * 5 3 2 31 31 H 1.09003 * 109.47623 * 180.02562 * 5 3 2 32 32 H 1.08997 * 109.46732 * 299.99923 * 6 5 3 33 33 H 1.08997 * 109.47043 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.47571 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47179 * 59.99881 * 7 6 5 36 36 H 1.09003 * 109.47121 * 299.99661 * 8 7 6 37 37 H 1.08999 * 109.47526 * 180.02562 * 8 7 6 38 38 H 0.97001 * 120.00149 * 241.57684 * 14 11 9 39 39 H 1.08994 * 109.47229 * 32.61593 * 15 14 11 40 40 H 1.08999 * 109.46685 * 272.60772 * 15 14 11 41 41 H 0.96994 * 120.00216 * 185.01105 * 20 19 17 42 42 H 1.09000 * 117.49790 * 214.97003 * 25 16 15 43 43 H 1.08999 * 117.50051 * 359.97438 * 25 16 15 44 44 H 1.08998 * 117.50003 * 359.97166 * 26 16 15 45 45 H 1.08997 * 117.50066 * 144.97318 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.1514 0.7972 2.1638 7 6 4.5001 0.7549 1.4426 8 6 4.2927 0.2891 0.0000 9 6 3.3589 1.2631 -0.7212 10 1 3.8023 2.2588 -0.7213 11 16 3.1124 0.7104 -2.4313 12 8 2.4380 1.7081 -3.1856 13 8 2.6846 -0.6444 -2.4606 14 7 4.6369 0.6714 -3.0767 15 6 5.6504 -0.2208 -2.5081 16 6 6.6645 -0.5962 -3.5907 17 6 6.0948 -1.2849 -4.8040 18 1 5.8981 -0.7200 -5.7032 19 6 5.8301 -2.6377 -4.7681 20 7 6.1614 -3.3447 -3.7098 21 14 5.0007 -3.4660 -6.2225 22 1 5.8423 -3.2972 -7.4343 23 1 4.8288 -4.9129 -5.9362 24 1 3.6710 -2.8462 -6.4531 25 6 7.8510 0.3456 -3.8050 26 6 8.0639 -1.0128 -3.1338 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.2569 1.8014 1.9563 31 1 2.6607 2.7672 1.4425 32 1 2.7080 -0.1985 2.1638 33 1 3.2996 1.1294 3.1913 34 1 5.1655 0.0614 1.9566 35 1 4.9435 1.7507 1.4425 36 1 3.8493 -0.7067 0.0000 37 1 5.2535 0.2585 -0.5137 38 1 4.8589 1.2391 -3.8313 39 1 5.1697 -1.1237 -2.1318 40 1 6.1629 0.2860 -1.6904 41 1 6.0421 -4.3073 -3.7128 42 1 8.2197 0.4670 -4.8235 43 1 7.9093 1.2331 -3.1750 44 1 8.2624 -1.0190 -2.0621 45 1 8.5725 -1.7853 -3.7106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601408879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:14 Heat of formation + Delta-G solvation = -96.686133 kcal Electronic energy + Delta-G solvation = -26910.972254 eV Core-core repulsion = 23249.470765 eV Total energy + Delta-G solvation = -3661.501489 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.52174 -37.15581 -36.49127 -36.08065 -35.30291 -33.31774 -31.85414 -31.10267 -30.22475 -26.61506 -25.89662 -24.92842 -23.07588 -22.72539 -21.12051 -19.88111 -19.35101 -18.73040 -17.00833 -16.83042 -16.48295 -16.21599 -15.59760 -15.42380 -15.03562 -14.53551 -14.24585 -14.13913 -13.90034 -13.62625 -13.28617 -12.99535 -12.69884 -12.65645 -12.17462 -12.13479 -11.91745 -11.64851 -11.48758 -11.37101 -11.30702 -11.15963 -11.09205 -10.85373 -10.82468 -10.54083 -10.45945 -10.25096 -10.19718 -10.14402 -9.55303 -9.49877 -9.03080 -8.48699 -8.36737 -8.07093 -5.96514 -4.02608 0.74689 3.31912 3.38795 3.43985 3.48670 3.54077 4.19803 4.39691 4.48389 4.49862 4.69642 4.80165 5.02457 5.11384 5.15734 5.23722 5.28197 5.31340 5.32361 5.34464 5.39610 5.57239 5.62959 5.68941 5.77828 5.92919 6.01078 6.04912 6.10143 6.13949 6.26625 6.31297 6.39415 6.47245 6.54400 6.71529 7.01888 7.06518 7.09179 7.41450 7.58069 7.79316 7.94731 8.44964 8.96161 9.63713 11.11839 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.005155 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.359040 B = 5430.721029 C = 6064.264991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.369 6.369 3 C 0.102 3.898 4 H 0.070 0.930 5 C -0.129 4.129 6 C -0.116 4.116 7 C -0.109 4.109 8 C -0.120 4.120 9 C -0.592 4.592 10 H 0.139 0.861 11 S 2.610 3.390 12 O -0.981 6.981 13 O -0.928 6.928 14 N -1.095 6.095 15 C 0.156 3.844 16 C 0.036 3.964 17 C -0.493 4.493 18 H 0.058 0.942 19 C 0.076 3.924 20 N -0.876 5.876 21 Si 0.887 3.113 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.213 4.213 26 C -0.150 4.150 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.413 0.587 39 H 0.086 0.914 40 H 0.038 0.962 41 H 0.261 0.739 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.857 10.213 12.318 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.288 6.288 3 C 0.043 3.957 4 H 0.088 0.912 5 C -0.167 4.167 6 C -0.153 4.153 7 C -0.147 4.147 8 C -0.158 4.158 9 C -0.699 4.699 10 H 0.157 0.843 11 S 2.701 3.299 12 O -0.971 6.971 13 O -0.917 6.917 14 N -0.854 5.854 15 C 0.031 3.969 16 C 0.034 3.966 17 C -0.531 4.531 18 H 0.076 0.924 19 C -0.128 4.128 20 N -0.512 5.512 21 Si 0.714 3.286 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.250 4.250 26 C -0.189 4.189 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.248 0.752 39 H 0.104 0.896 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.675 9.508 12.139 16.802 hybrid contribution -0.103 0.261 -0.543 0.611 sum -6.778 9.768 11.597 16.609 Atomic orbital electron populations 1.22895 0.80803 1.03535 0.99861 1.88090 1.19788 1.25960 1.94929 1.21693 0.91402 0.85875 0.96772 0.91173 1.21899 1.00349 0.99648 0.94839 1.21447 0.95537 1.00341 0.98008 1.21435 0.96984 1.01241 0.95080 1.21801 0.99303 0.98321 0.96369 1.30705 1.03152 1.11066 1.25000 0.84279 1.05039 0.73698 0.75088 0.76078 1.93531 1.73174 1.62533 1.67867 1.93625 1.79681 1.33216 1.85192 1.55129 1.30483 1.54441 1.45386 1.21181 0.89997 0.91435 0.94330 1.18991 0.85470 0.96590 0.95593 1.20257 1.42988 0.93030 0.96827 0.92385 1.24912 0.94791 0.97430 0.95661 1.69923 1.46737 1.06418 1.28166 0.86747 0.80587 0.78517 0.82724 1.20435 1.21205 1.19948 1.23012 1.08629 0.93028 1.00319 1.22507 1.03122 0.95835 0.97407 0.93922 0.93848 0.88878 0.91544 0.90926 0.90870 0.92251 0.91319 0.92177 0.89054 0.88537 0.75236 0.89556 0.94395 0.92899 0.90447 0.91691 0.91861 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.37 -5.32 7.98 -43.78 -0.35 -5.67 16 3 C 0.10 1.29 2.35 -26.73 -0.06 1.22 16 4 H 0.07 0.80 7.79 -51.93 -0.40 0.40 16 5 C -0.13 -1.28 5.63 -26.73 -0.15 -1.43 16 6 C -0.12 -1.20 5.78 -26.73 -0.15 -1.35 16 7 C -0.11 -1.21 5.92 -26.73 -0.16 -1.36 16 8 C -0.12 -1.67 4.25 -26.73 -0.11 -1.78 16 9 C -0.59 -8.11 2.67 -26.73 -0.07 -8.18 16 10 H 0.14 1.51 8.14 -51.93 -0.42 1.08 16 11 S 2.61 48.25 4.88 -107.50 -0.52 47.72 16 12 O -0.98 -19.66 18.08 -57.54 -1.04 -20.70 16 13 O -0.93 -21.11 16.74 -62.38 -1.04 -22.16 16 14 N -1.09 -20.81 5.60 -10.61 -0.06 -20.87 16 15 C 0.16 3.20 4.26 -4.03 -0.02 3.18 16 16 C 0.04 0.82 1.50 -155.66 -0.23 0.59 16 17 C -0.49 -13.21 8.60 -34.44 -0.30 -13.50 16 18 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 19 C 0.08 2.10 5.44 -17.82 -0.10 2.01 16 20 N -0.88 -24.74 12.83 55.43 0.71 -24.03 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.94 7.11 56.52 0.40 -6.53 16 25 C -0.21 -4.30 9.94 -26.73 -0.27 -4.56 16 26 C -0.15 -3.31 9.39 -26.74 -0.25 -3.56 16 27 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 28 H 0.04 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.57 7.87 -51.93 -0.41 0.17 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.46 7.68 -51.93 -0.40 1.06 16 37 H 0.10 1.36 3.95 -51.93 -0.20 1.15 16 38 H 0.41 7.51 8.72 -34.47 -0.30 7.21 16 39 H 0.09 2.00 7.34 -51.93 -0.38 1.62 16 40 H 0.04 0.65 5.97 -51.93 -0.31 0.34 16 41 H 0.26 7.15 8.32 -40.82 -0.34 6.81 16 42 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -32.99 364.02 -10.03 -43.02 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.41 Total: 7.60 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -0.78 Total: -27.36 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.65 Total: -44.90 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -2.43 Total: -48.53 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 48.25 SS G_CDS: -0.52 Total: 47.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.99 -10.03 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601408879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.663 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds