Wall clock time and date at job start Tue Mar 31 2020 11:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42890 * 114.00432 * 2 1 4 4 H 1.09007 * 109.47182 * 330.00258 * 3 2 1 5 5 C 1.53000 * 109.47284 * 89.99777 * 3 2 1 6 6 C 1.53006 * 109.47024 * 60.00172 * 5 3 2 7 7 C 1.52998 * 109.47084 * 60.00101 * 6 5 3 8 8 C 1.52999 * 109.47217 * 300.00396 * 7 6 5 9 9 C 1.52996 * 109.47475 * 59.99814 * 8 7 6 10 10 H 1.08992 * 109.47371 * 60.00223 * 9 8 7 11 11 S 1.81405 * 109.47553 * 180.02562 * 9 8 7 12 12 O 1.42096 * 110.54635 * 189.81946 * 11 9 8 13 13 O 1.42108 * 110.53724 * 53.06833 * 11 9 8 14 14 N 1.65598 * 104.44607 * 301.44628 * 11 9 8 15 15 C 1.46508 * 119.99766 * 61.58521 * 14 11 9 16 16 C 1.53010 * 109.46796 * 152.61547 * 15 14 11 17 17 C 1.50697 * 115.54663 * 301.09939 * 16 15 14 18 18 H 1.07996 * 120.00448 * 99.15843 * 17 16 15 19 19 C 1.37884 * 119.99820 * 278.87792 * 17 16 15 20 20 N 1.31513 * 120.00179 * 355.21297 * 19 17 16 21 21 Si 1.86799 * 119.99844 * 175.20987 * 19 17 16 22 22 H 1.48506 * 109.47123 * 60.00075 * 21 19 17 23 23 H 1.48497 * 109.47185 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47367 * 299.99997 * 21 19 17 25 25 C 1.52997 * 117.51806 * 86.80003 * 16 15 14 26 26 C 1.52990 * 117.49751 * 155.43131 * 16 15 14 27 27 H 1.09005 * 109.46978 * 299.99981 * 1 2 3 28 28 H 1.09001 * 109.47442 * 59.99639 * 1 2 3 29 29 H 1.09002 * 109.47509 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47416 * 300.00213 * 5 3 2 31 31 H 1.09003 * 109.47623 * 180.02562 * 5 3 2 32 32 H 1.08997 * 109.46732 * 299.99923 * 6 5 3 33 33 H 1.08997 * 109.47043 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.47571 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47179 * 59.99881 * 7 6 5 36 36 H 1.09003 * 109.47121 * 299.99661 * 8 7 6 37 37 H 1.08999 * 109.47526 * 180.02562 * 8 7 6 38 38 H 0.97001 * 120.00149 * 241.57684 * 14 11 9 39 39 H 1.08994 * 109.47229 * 32.61593 * 15 14 11 40 40 H 1.08999 * 109.46685 * 272.60772 * 15 14 11 41 41 H 0.96994 * 120.00216 * 185.01105 * 20 19 17 42 42 H 1.09000 * 117.49790 * 214.97003 * 25 16 15 43 43 H 1.08999 * 117.50051 * 359.97438 * 25 16 15 44 44 H 1.08998 * 117.50003 * 359.97166 * 26 16 15 45 45 H 1.08997 * 117.50066 * 144.97318 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.1514 0.7972 2.1638 7 6 4.5001 0.7549 1.4426 8 6 4.2927 0.2891 0.0000 9 6 3.3589 1.2631 -0.7212 10 1 3.8023 2.2588 -0.7213 11 16 3.1124 0.7104 -2.4313 12 8 2.4380 1.7081 -3.1856 13 8 2.6846 -0.6444 -2.4606 14 7 4.6369 0.6714 -3.0767 15 6 5.6504 -0.2208 -2.5081 16 6 6.6645 -0.5962 -3.5907 17 6 6.0948 -1.2849 -4.8040 18 1 5.8981 -0.7200 -5.7032 19 6 5.8301 -2.6377 -4.7681 20 7 6.1614 -3.3447 -3.7098 21 14 5.0007 -3.4660 -6.2225 22 1 5.8423 -3.2972 -7.4343 23 1 4.8288 -4.9129 -5.9362 24 1 3.6710 -2.8462 -6.4531 25 6 7.8510 0.3456 -3.8050 26 6 8.0639 -1.0128 -3.1338 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.2569 1.8014 1.9563 31 1 2.6607 2.7672 1.4425 32 1 2.7080 -0.1985 2.1638 33 1 3.2996 1.1294 3.1913 34 1 5.1655 0.0614 1.9566 35 1 4.9435 1.7507 1.4425 36 1 3.8493 -0.7067 0.0000 37 1 5.2535 0.2585 -0.5137 38 1 4.8589 1.2391 -3.8313 39 1 5.1697 -1.1237 -2.1318 40 1 6.1629 0.2860 -1.6904 41 1 6.0421 -4.3073 -3.7128 42 1 8.2197 0.4670 -4.8235 43 1 7.9093 1.2331 -3.1750 44 1 8.2624 -1.0190 -2.0621 45 1 8.5725 -1.7853 -3.7106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601408879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:13 Heat of formation + Delta-G solvation = -120.180546 kcal Electronic energy + Delta-G solvation = -26911.991048 eV Core-core repulsion = 23249.470765 eV Total energy + Delta-G solvation = -3662.520283 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.47643 -38.82664 -38.04651 -37.09967 -36.85976 -34.87913 -33.90244 -32.07942 -31.13465 -27.78185 -27.50614 -26.69771 -24.07209 -23.67578 -22.80737 -21.18814 -20.74957 -20.19248 -18.58178 -18.22110 -17.80308 -17.44967 -17.01918 -16.55642 -16.43674 -16.25215 -15.78798 -15.28661 -15.23667 -14.93028 -14.49322 -14.23776 -13.90414 -13.74577 -13.61881 -13.53426 -13.09419 -13.05881 -12.99301 -12.87904 -12.85730 -12.77250 -12.59231 -12.39198 -12.22706 -12.07321 -11.92638 -11.44983 -11.35023 -11.25176 -11.09387 -10.92766 -10.56268 -10.36580 -10.04362 -9.78257 -8.07594 -6.15405 -0.66032 1.34959 1.41255 1.44124 1.88889 2.42602 2.58623 2.87543 3.22275 3.28089 3.41473 3.59090 3.67141 3.91244 4.04898 4.16065 4.25574 4.29053 4.31902 4.39918 4.43840 4.48355 4.57015 4.63081 4.68795 4.74729 4.78967 4.83287 4.95007 4.99366 5.10398 5.16376 5.23459 5.29869 5.33343 5.37182 5.38739 5.57424 5.70772 5.79691 5.86950 6.12006 6.29291 6.46801 6.88743 7.51456 8.99535 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.005155 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.359040 B = 5430.721029 C = 6064.264991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.400 6.400 3 C 0.088 3.912 4 H 0.082 0.918 5 C -0.123 4.123 6 C -0.117 4.117 7 C -0.106 4.106 8 C -0.122 4.122 9 C -0.558 4.558 10 H 0.181 0.819 11 S 2.599 3.401 12 O -1.004 7.004 13 O -0.987 6.987 14 N -1.099 6.099 15 C 0.168 3.832 16 C -0.001 4.001 17 C -0.501 4.501 18 H 0.047 0.953 19 C 0.030 3.970 20 N -0.899 5.899 21 Si 0.926 3.074 22 H -0.266 1.266 23 H -0.283 1.283 24 H -0.286 1.286 25 C -0.181 4.181 26 C -0.155 4.155 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.416 0.584 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.258 0.742 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 13.056 14.616 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.320 6.320 3 C 0.029 3.971 4 H 0.100 0.900 5 C -0.161 4.161 6 C -0.155 4.155 7 C -0.144 4.144 8 C -0.160 4.160 9 C -0.671 4.671 10 H 0.199 0.801 11 S 2.696 3.304 12 O -0.995 6.995 13 O -0.976 6.976 14 N -0.858 5.858 15 C 0.043 3.957 16 C -0.003 4.003 17 C -0.539 4.539 18 H 0.065 0.935 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.753 3.247 22 H -0.191 1.191 23 H -0.209 1.209 24 H -0.212 1.212 25 C -0.218 4.218 26 C -0.194 4.194 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.250 0.750 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.212 12.332 14.349 19.914 hybrid contribution -0.273 -0.583 -1.223 1.382 sum -6.485 11.749 13.126 18.772 Atomic orbital electron populations 1.23085 0.79602 1.04090 1.01218 1.88067 1.21349 1.27347 1.95209 1.22045 0.90550 0.85654 0.98883 0.89976 1.21930 1.01465 1.00416 0.92299 1.21470 0.95011 0.99640 0.99362 1.21470 0.97815 1.02580 0.92538 1.21798 0.98537 0.96975 0.98702 1.30434 1.04886 1.12723 1.19084 0.80126 1.05108 0.73179 0.73850 0.78215 1.93486 1.73641 1.62283 1.70090 1.93556 1.80621 1.36479 1.86975 1.55015 1.30064 1.54314 1.46358 1.20973 0.89333 0.90967 0.94465 1.19134 0.86740 0.98837 0.95582 1.20599 1.42122 0.93166 0.97969 0.93468 1.25490 0.95756 0.98386 0.97483 1.69999 1.48256 1.06189 1.29242 0.86115 0.79342 0.77846 0.81406 1.19056 1.20866 1.21230 1.23024 1.04925 0.93262 1.00592 1.22433 1.01985 0.96532 0.98403 0.90829 0.94128 0.88966 0.89831 0.88428 0.92912 0.89825 0.90885 0.89642 0.92178 0.88888 0.74991 0.93163 0.90175 0.93316 0.90906 0.87855 0.89774 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.57 16 2 O -0.40 -11.35 7.98 -140.80 -1.12 -12.48 16 3 C 0.09 2.00 2.35 30.60 0.07 2.07 16 4 H 0.08 1.66 7.79 -2.38 -0.02 1.64 16 5 C -0.12 -1.89 5.63 30.60 0.17 -1.72 16 6 C -0.12 -2.00 5.78 30.60 0.18 -1.82 16 7 C -0.11 -1.94 5.92 30.59 0.18 -1.76 16 8 C -0.12 -3.16 4.25 30.59 0.13 -3.03 16 9 C -0.56 -13.97 2.67 30.59 0.08 -13.89 16 10 H 0.18 3.04 8.14 -2.39 -0.02 3.03 16 11 S 2.60 96.76 4.88 -56.49 -0.28 96.49 16 12 O -1.00 -40.44 18.08 -127.65 -2.31 -42.75 16 13 O -0.99 -47.30 16.74 -123.02 -2.06 -49.36 16 14 N -1.10 -41.50 5.60 -187.47 -1.05 -42.55 16 15 C 0.17 6.82 4.26 86.38 0.37 7.18 16 16 C 0.00 -0.05 1.50 -52.93 -0.08 -0.13 16 17 C -0.50 -27.35 8.60 25.60 0.22 -27.13 16 18 H 0.05 2.60 7.82 -2.91 -0.02 2.57 16 19 C 0.03 1.69 5.44 84.66 0.46 2.15 16 20 N -0.90 -52.42 12.83 21.45 0.28 -52.14 16 21 Si 0.93 46.27 29.54 68.60 2.03 48.29 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 25 C -0.18 -6.90 9.94 30.59 0.30 -6.60 16 26 C -0.15 -6.70 9.39 30.59 0.29 -6.41 16 27 H 0.07 1.10 7.87 -2.38 -0.02 1.09 16 28 H 0.04 0.87 8.09 -2.39 -0.02 0.85 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.08 1.06 7.87 -2.39 -0.02 1.04 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.12 7.68 -2.39 -0.02 1.10 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.95 7.68 -2.39 -0.02 1.93 16 37 H 0.09 2.42 3.95 -2.39 -0.01 2.41 16 38 H 0.42 14.98 8.72 -96.74 -0.84 14.14 16 39 H 0.05 2.40 7.34 -2.39 -0.02 2.38 16 40 H 0.08 2.54 5.97 -2.39 -0.01 2.53 16 41 H 0.26 14.62 8.32 -92.71 -0.77 13.85 16 42 H 0.07 2.83 8.14 -2.39 -0.02 2.82 16 43 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.08 3.23 8.14 -2.39 -0.02 3.22 16 45 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -75.38 364.02 -0.78 -76.15 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.14 Total: 27.86 kcal Atomic # 6 Polarization: -53.12 SS G_CDS: 3.60 Total: -49.52 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -0.77 Total: -94.70 kcal Atomic # 8 Polarization: -99.09 SS G_CDS: -5.49 Total: -104.58 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 16 Polarization: 96.76 SS G_CDS: -0.28 Total: 96.49 kcal Total: -75.38 -0.78 -76.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601408879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.028 kcal (2) G-P(sol) polarization free energy of solvation -75.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds