Wall clock time and date at job start Tue Mar 31 2020 11:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99472 * 2 1 4 4 H 1.09000 * 110.05676 * 28.58593 * 3 2 1 5 5 C 1.53876 * 110.03545 * 267.16461 * 3 2 1 6 6 C 1.54261 * 106.60108 * 240.72185 * 5 3 2 7 7 C 1.54888 * 104.19537 * 336.38577 * 6 5 3 8 8 C 1.54265 * 110.03143 * 150.00115 * 3 2 1 9 9 H 1.09005 * 110.60143 * 24.16094 * 8 3 2 10 10 S 1.81401 * 110.48602 * 261.57335 * 8 3 2 11 11 O 1.42102 * 110.54326 * 77.14743 * 10 8 3 12 12 O 1.42097 * 110.54474 * 300.39346 * 10 8 3 13 13 N 1.65608 * 104.44945 * 188.76813 * 10 8 3 14 14 C 1.46495 * 119.99695 * 64.99881 * 13 10 8 15 15 H 1.08997 * 110.02255 * 335.06309 * 14 13 10 16 16 C 1.53876 * 110.03179 * 96.45317 * 14 13 10 17 17 C 1.54273 * 106.59631 * 119.28219 * 16 14 13 18 18 C 1.54889 * 104.19458 * 23.61488 * 17 16 14 19 19 H 1.08993 * 110.75638 * 80.37260 * 18 17 16 20 20 C 1.50704 * 110.75191 * 203.55866 * 18 17 16 21 21 H 1.07997 * 120.00327 * 118.54392 * 20 18 17 22 22 C 1.37875 * 119.99877 * 298.54227 * 20 18 17 23 23 N 1.31519 * 120.00243 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 120.00361 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47021 * 59.99695 * 24 22 20 26 26 H 1.48497 * 109.47620 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47073 * 300.00450 * 24 22 20 28 28 C 1.54274 * 110.03215 * 213.61951 * 14 13 10 29 29 H 1.09001 * 109.47729 * 59.99941 * 1 2 3 30 30 H 1.09008 * 109.47037 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47336 * 299.99672 * 1 2 3 32 32 H 1.08996 * 110.03255 * 121.42886 * 5 3 2 33 33 H 1.09008 * 110.06679 * 0.02878 * 5 3 2 34 34 H 1.08999 * 110.48481 * 217.71349 * 6 5 3 35 35 H 1.09000 * 110.48954 * 95.06577 * 6 5 3 36 36 H 1.09004 * 110.75784 * 279.63009 * 7 6 5 37 37 H 1.09000 * 110.75713 * 156.25915 * 7 6 5 38 38 H 0.96999 * 120.00176 * 245.00119 * 13 10 8 39 39 H 1.08998 * 110.03309 * 238.56606 * 16 14 13 40 40 H 1.09005 * 110.03338 * 359.95251 * 16 14 13 41 41 H 1.09003 * 110.48143 * 142.28807 * 17 16 14 42 42 H 1.08993 * 110.48803 * 264.79672 * 17 16 14 43 43 H 0.96999 * 120.00098 * 179.97438 * 23 22 20 44 44 H 1.08997 * 110.48140 * 335.78486 * 28 14 13 45 45 H 1.08999 * 110.48376 * 98.42975 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3407 2.0126 0.4899 5 6 2.2898 1.7581 -1.4439 6 6 3.8115 1.9895 -1.5462 7 6 4.2538 2.2591 -0.0866 8 6 3.3717 1.2778 0.7246 9 1 3.7976 0.2747 0.7026 10 16 3.1919 1.8520 2.4360 11 8 2.6232 0.8329 3.2467 12 8 2.6861 3.1796 2.4660 13 7 4.7462 1.9945 2.9895 14 6 5.6474 2.9848 2.3953 15 1 5.3304 3.2149 1.3781 16 6 5.6573 4.2664 3.2468 17 6 7.1092 4.4633 3.7298 18 6 7.9626 3.6939 2.6911 19 1 8.1063 4.2912 1.7908 20 6 9.2902 3.2941 3.2818 21 1 9.5528 2.2497 3.3626 22 6 10.1697 4.2618 3.7190 23 7 9.8498 5.5337 3.6211 24 14 11.8156 3.7664 4.4505 25 1 12.5948 3.0019 3.4436 26 1 12.5704 4.9841 4.8410 27 1 11.5897 2.9190 5.6489 28 6 7.0936 2.4476 2.3905 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7561 2.6847 -1.6547 33 1 1.9820 0.9824 -2.1452 34 1 4.0244 2.8539 -2.1752 35 1 4.3071 1.1008 -1.9370 36 1 4.0444 3.2908 0.1962 37 1 5.3107 2.0281 0.0458 38 1 5.0598 1.4222 3.7072 39 1 5.3461 5.1186 2.6427 40 1 4.9910 4.1518 4.1018 41 1 7.3710 5.5214 3.7300 42 1 7.2412 4.0385 4.7249 43 1 10.4684 6.2145 3.9290 44 1 7.2235 1.6952 3.1683 45 1 7.3439 2.0347 1.4133 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601425657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:22 Heat of formation + Delta-G solvation = -130.867786 kcal Electronic energy + Delta-G solvation = -26103.401075 eV Core-core repulsion = 22440.417359 eV Total energy + Delta-G solvation = -3662.983716 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.43882 -37.94030 -36.97764 -36.20999 -35.87485 -33.65148 -31.69137 -29.53865 -28.70130 -28.14087 -26.66791 -26.44348 -23.85272 -21.64521 -21.12559 -19.68744 -19.64383 -19.00954 -17.89332 -17.07297 -16.86630 -16.58138 -15.69871 -15.58312 -15.25875 -14.77465 -14.60719 -14.37244 -14.18045 -13.97707 -13.34709 -12.75228 -12.63431 -12.45034 -12.36564 -12.17017 -12.01928 -11.93458 -11.81547 -11.65673 -11.64640 -11.32177 -11.20586 -11.01569 -10.86707 -10.82919 -10.63110 -10.53669 -10.15090 -9.97900 -9.91517 -9.50012 -9.26544 -8.93169 -8.78946 -8.36958 -6.01323 -4.04766 0.29098 2.79359 3.28259 3.31267 3.36567 3.38727 3.68001 4.00998 4.11677 4.38921 4.43267 4.47882 4.80736 4.88497 4.97995 5.02281 5.06788 5.10260 5.22483 5.30618 5.35272 5.39779 5.50226 5.56012 5.59567 5.69617 5.74457 5.78546 5.89269 5.96761 6.36570 6.52199 6.63393 6.67881 6.78599 6.78622 6.92048 7.22167 7.31338 7.36647 7.72634 7.88673 8.02094 8.42351 8.97080 9.59513 11.07615 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025640 B = 0.003349 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.761852 B = 8358.605027 C = 8712.673143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.377 6.377 3 C 0.108 3.892 4 H 0.070 0.930 5 C -0.141 4.141 6 C -0.113 4.113 7 C -0.112 4.112 8 C -0.600 4.600 9 H 0.153 0.847 10 S 2.610 3.390 11 O -0.963 6.963 12 O -0.951 6.951 13 N -1.104 6.104 14 C 0.129 3.871 15 H 0.088 0.912 16 C -0.139 4.139 17 C -0.101 4.101 18 C 0.051 3.949 19 H 0.032 0.968 20 C -0.516 4.516 21 H 0.055 0.945 22 C 0.063 3.937 23 N -0.888 5.888 24 Si 0.889 3.111 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.278 1.278 28 C -0.120 4.120 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.417 0.583 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.260 0.740 44 H 0.065 0.935 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.107 -7.493 -9.949 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.296 6.296 3 C 0.048 3.952 4 H 0.088 0.912 5 C -0.180 4.180 6 C -0.151 4.151 7 C -0.150 4.150 8 C -0.708 4.708 9 H 0.171 0.829 10 S 2.701 3.299 11 O -0.953 6.953 12 O -0.941 6.941 13 N -0.864 5.864 14 C 0.023 3.977 15 H 0.106 0.894 16 C -0.179 4.179 17 C -0.140 4.140 18 C 0.032 3.968 19 H 0.050 0.950 20 C -0.554 4.554 21 H 0.073 0.927 22 C -0.139 4.139 23 N -0.527 5.527 24 Si 0.717 3.283 25 H -0.204 1.204 26 H -0.214 1.214 27 H -0.204 1.204 28 C -0.160 4.160 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.252 0.748 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.798 -7.180 -9.560 20.619 hybrid contribution 1.223 -0.545 0.283 1.369 sum -15.575 -7.725 -9.277 19.706 Atomic orbital electron populations 1.22908 0.80622 1.03394 1.00371 1.87985 1.20023 1.26621 1.94984 1.22387 0.91043 0.85239 0.96511 0.91174 1.22647 0.97725 1.01960 0.95625 1.22265 0.94566 1.02336 0.95958 1.22647 0.99711 0.97521 0.95131 1.31681 1.03416 1.12156 1.23564 0.82919 1.05000 0.73707 0.74774 0.76400 1.93583 1.76490 1.60526 1.64744 1.93607 1.78333 1.36138 1.86031 1.55637 1.31769 1.49465 1.49540 1.22078 0.91285 0.88100 0.96231 0.89403 1.22722 1.00191 0.95816 0.99155 1.22317 0.90248 1.02125 0.99293 1.19559 0.92357 0.90060 0.94833 0.95005 1.21060 1.00866 0.92682 1.40782 0.92724 1.24965 0.98085 0.95013 0.95787 1.69943 1.36226 0.99413 1.47069 0.86711 0.84121 0.77797 0.79635 1.20358 1.21383 1.20353 1.22790 0.91973 1.00805 1.00394 0.93623 0.89035 0.93595 0.90605 0.90113 0.90487 0.90784 0.89140 0.88201 0.74809 0.92336 0.92455 0.91199 0.93463 0.93012 0.91663 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.85 101.05 1.10 1.29 16 2 O -0.38 -4.28 10.26 -35.23 -0.36 -4.64 16 3 C 0.11 1.16 2.97 -25.61 -0.08 1.08 16 4 H 0.07 0.72 7.34 -51.93 -0.38 0.34 16 5 C -0.14 -1.23 6.61 -25.61 -0.17 -1.40 16 6 C -0.11 -0.98 6.83 -25.08 -0.17 -1.15 16 7 C -0.11 -1.15 4.33 -24.74 -0.11 -1.26 16 8 C -0.60 -6.74 3.33 -25.07 -0.08 -6.83 16 9 H 0.15 1.58 8.08 -51.93 -0.42 1.16 16 10 S 2.61 37.01 4.96 -107.50 -0.53 36.48 16 11 O -0.96 -16.21 18.08 -57.54 -1.04 -17.25 16 12 O -0.95 -15.77 17.44 -57.54 -1.00 -16.77 16 13 N -1.10 -15.86 5.29 -3.94 -0.02 -15.88 16 14 C 0.13 2.07 2.79 -66.81 -0.19 1.88 16 15 H 0.09 1.21 3.69 -51.93 -0.19 1.02 16 16 C -0.14 -2.60 6.60 -25.61 -0.17 -2.77 16 17 C -0.10 -2.28 5.57 -25.07 -0.14 -2.42 16 18 C 0.05 1.18 2.81 -89.78 -0.25 0.93 16 19 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 20 C -0.52 -13.53 8.55 -34.44 -0.29 -13.82 16 21 H 0.05 1.41 7.78 -52.49 -0.41 1.00 16 22 C 0.06 1.71 5.33 -17.82 -0.10 1.61 16 23 N -0.89 -24.81 12.01 55.43 0.67 -24.15 16 24 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 C -0.12 -2.20 5.95 -25.07 -0.15 -2.35 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.05 0.37 8.10 -51.93 -0.42 -0.05 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.66 7.96 -51.92 -0.41 0.24 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.94 6.84 -51.93 -0.36 0.59 16 37 H 0.10 0.98 7.03 -51.93 -0.37 0.62 16 38 H 0.42 5.61 8.58 -34.48 -0.30 5.31 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.05 7.92 -51.93 -0.41 0.64 16 41 H 0.07 1.72 7.37 -51.93 -0.38 1.34 16 42 H 0.05 1.11 8.05 -51.93 -0.42 0.69 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.06 1.19 7.72 -51.93 -0.40 0.79 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 361.32 15.07 5.45 5.45 Total: -1.00 -32.23 361.32 -10.05 -42.28 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.38 Total: 3.87 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -0.80 Total: -25.19 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.65 Total: -40.03 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -2.41 Total: -38.67 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 37.01 SS G_CDS: -0.53 Total: 36.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.23 -10.05 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601425657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.587 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds