Wall clock time and date at job start Tue Mar 31 2020 11:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99472 * 2 1 4 4 H 1.09000 * 110.05676 * 28.58593 * 3 2 1 5 5 C 1.53876 * 110.03545 * 267.16461 * 3 2 1 6 6 C 1.54261 * 106.60108 * 240.72185 * 5 3 2 7 7 C 1.54888 * 104.19537 * 336.38577 * 6 5 3 8 8 C 1.54265 * 110.03143 * 150.00115 * 3 2 1 9 9 H 1.09005 * 110.60143 * 24.16094 * 8 3 2 10 10 S 1.81401 * 110.48602 * 261.57335 * 8 3 2 11 11 O 1.42102 * 110.54326 * 77.14743 * 10 8 3 12 12 O 1.42097 * 110.54474 * 300.39346 * 10 8 3 13 13 N 1.65608 * 104.44945 * 188.76813 * 10 8 3 14 14 C 1.46495 * 119.99695 * 64.99881 * 13 10 8 15 15 H 1.08997 * 110.02255 * 335.06309 * 14 13 10 16 16 C 1.53876 * 110.03179 * 96.45317 * 14 13 10 17 17 C 1.54273 * 106.59631 * 119.28219 * 16 14 13 18 18 C 1.54889 * 104.19458 * 23.61488 * 17 16 14 19 19 H 1.08993 * 110.75638 * 80.37260 * 18 17 16 20 20 C 1.50704 * 110.75191 * 203.55866 * 18 17 16 21 21 H 1.07997 * 120.00327 * 118.54392 * 20 18 17 22 22 C 1.37875 * 119.99877 * 298.54227 * 20 18 17 23 23 N 1.31519 * 120.00243 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 120.00361 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47021 * 59.99695 * 24 22 20 26 26 H 1.48497 * 109.47620 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47073 * 300.00450 * 24 22 20 28 28 C 1.54274 * 110.03215 * 213.61951 * 14 13 10 29 29 H 1.09001 * 109.47729 * 59.99941 * 1 2 3 30 30 H 1.09008 * 109.47037 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47336 * 299.99672 * 1 2 3 32 32 H 1.08996 * 110.03255 * 121.42886 * 5 3 2 33 33 H 1.09008 * 110.06679 * 0.02878 * 5 3 2 34 34 H 1.08999 * 110.48481 * 217.71349 * 6 5 3 35 35 H 1.09000 * 110.48954 * 95.06577 * 6 5 3 36 36 H 1.09004 * 110.75784 * 279.63009 * 7 6 5 37 37 H 1.09000 * 110.75713 * 156.25915 * 7 6 5 38 38 H 0.96999 * 120.00176 * 245.00119 * 13 10 8 39 39 H 1.08998 * 110.03309 * 238.56606 * 16 14 13 40 40 H 1.09005 * 110.03338 * 359.95251 * 16 14 13 41 41 H 1.09003 * 110.48143 * 142.28807 * 17 16 14 42 42 H 1.08993 * 110.48803 * 264.79672 * 17 16 14 43 43 H 0.96999 * 120.00098 * 179.97438 * 23 22 20 44 44 H 1.08997 * 110.48140 * 335.78486 * 28 14 13 45 45 H 1.08999 * 110.48376 * 98.42975 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3407 2.0126 0.4899 5 6 2.2898 1.7581 -1.4439 6 6 3.8115 1.9895 -1.5462 7 6 4.2538 2.2591 -0.0866 8 6 3.3717 1.2778 0.7246 9 1 3.7976 0.2747 0.7026 10 16 3.1919 1.8520 2.4360 11 8 2.6232 0.8329 3.2467 12 8 2.6861 3.1796 2.4660 13 7 4.7462 1.9945 2.9895 14 6 5.6474 2.9848 2.3953 15 1 5.3304 3.2149 1.3781 16 6 5.6573 4.2664 3.2468 17 6 7.1092 4.4633 3.7298 18 6 7.9626 3.6939 2.6911 19 1 8.1063 4.2912 1.7908 20 6 9.2902 3.2941 3.2818 21 1 9.5528 2.2497 3.3626 22 6 10.1697 4.2618 3.7190 23 7 9.8498 5.5337 3.6211 24 14 11.8156 3.7664 4.4505 25 1 12.5948 3.0019 3.4436 26 1 12.5704 4.9841 4.8410 27 1 11.5897 2.9190 5.6489 28 6 7.0936 2.4476 2.3905 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7561 2.6847 -1.6547 33 1 1.9820 0.9824 -2.1452 34 1 4.0244 2.8539 -2.1752 35 1 4.3071 1.1008 -1.9370 36 1 4.0444 3.2908 0.1962 37 1 5.3107 2.0281 0.0458 38 1 5.0598 1.4222 3.7072 39 1 5.3461 5.1186 2.6427 40 1 4.9910 4.1518 4.1018 41 1 7.3710 5.5214 3.7300 42 1 7.2412 4.0385 4.7249 43 1 10.4684 6.2145 3.9290 44 1 7.2235 1.6952 3.1683 45 1 7.3439 2.0347 1.4133 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601425657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:22 Heat of formation + Delta-G solvation = -153.606699 kcal Electronic energy + Delta-G solvation = -26104.387108 eV Core-core repulsion = 22440.417359 eV Total energy + Delta-G solvation = -3663.969750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.21981 -39.39113 -38.21745 -37.11303 -36.98602 -35.30930 -33.43848 -30.31918 -29.85121 -29.42375 -28.25451 -27.12438 -25.69414 -22.52418 -21.93874 -21.22063 -21.03673 -20.30070 -18.88625 -18.39534 -18.12571 -17.81870 -16.97415 -16.54422 -16.38515 -16.11510 -16.03983 -15.80240 -14.95814 -14.76627 -14.58194 -14.14104 -13.94643 -13.86435 -13.48547 -13.28459 -13.22785 -13.17964 -13.05360 -12.90028 -12.82198 -12.67165 -12.47017 -12.37672 -12.16662 -11.99691 -11.78495 -11.61010 -11.56674 -11.46588 -11.22300 -10.91960 -10.75663 -10.71032 -10.41637 -10.21579 -8.06242 -6.15344 -0.81508 1.44720 1.45486 1.52432 1.66325 2.46927 2.50408 2.69673 3.05407 3.24697 3.27330 3.47927 3.68626 3.82784 4.03130 4.07471 4.16524 4.18739 4.31639 4.36008 4.45947 4.48314 4.51937 4.68978 4.77781 4.81298 4.84266 4.87990 4.96713 5.04682 5.10074 5.13462 5.16963 5.21126 5.27915 5.32431 5.49618 5.66324 5.72093 5.99834 6.07106 6.08137 6.12478 6.44313 6.95764 7.51944 9.01516 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025640 B = 0.003349 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.761852 B = 8358.605027 C = 8712.673143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.397 6.397 3 C 0.096 3.904 4 H 0.070 0.930 5 C -0.138 4.138 6 C -0.110 4.110 7 C -0.122 4.122 8 C -0.580 4.580 9 H 0.166 0.834 10 S 2.613 3.387 11 O -0.994 6.994 12 O -0.980 6.980 13 N -1.103 6.103 14 C 0.140 3.860 15 H 0.118 0.882 16 C -0.137 4.137 17 C -0.095 4.095 18 C 0.039 3.961 19 H 0.012 0.988 20 C -0.529 4.529 21 H 0.056 0.944 22 C 0.012 3.988 23 N -0.918 5.918 24 Si 0.948 3.052 25 H -0.270 1.270 26 H -0.289 1.289 27 H -0.275 1.275 28 C -0.110 4.110 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.420 0.580 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.038 0.962 42 H 0.027 0.973 43 H 0.258 0.742 44 H 0.064 0.936 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.625 -8.856 -11.755 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.316 6.316 3 C 0.037 3.963 4 H 0.088 0.912 5 C -0.177 4.177 6 C -0.148 4.148 7 C -0.160 4.160 8 C -0.692 4.692 9 H 0.184 0.816 10 S 2.709 3.291 11 O -0.984 6.984 12 O -0.970 6.970 13 N -0.862 5.862 14 C 0.034 3.966 15 H 0.135 0.865 16 C -0.177 4.177 17 C -0.134 4.134 18 C 0.020 3.980 19 H 0.030 0.970 20 C -0.568 4.568 21 H 0.074 0.926 22 C -0.187 4.187 23 N -0.557 5.557 24 Si 0.774 3.226 25 H -0.195 1.195 26 H -0.215 1.215 27 H -0.200 1.200 28 C -0.149 4.149 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.256 0.744 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.325 -8.550 -11.319 22.391 hybrid contribution 1.337 -0.132 0.817 1.572 sum -15.988 -8.681 -10.502 21.007 Atomic orbital electron populations 1.23144 0.79301 1.04674 1.01201 1.87947 1.21584 1.26900 1.95173 1.22593 0.90569 0.85337 0.97834 0.91202 1.22664 0.98041 1.02826 0.94120 1.22295 0.94374 1.03355 0.94791 1.22789 0.99927 0.97057 0.96205 1.31467 1.04720 1.12969 1.20069 0.81598 1.04741 0.73037 0.73800 0.77490 1.93541 1.76949 1.61026 1.66883 1.93567 1.78799 1.37586 1.87038 1.55496 1.31385 1.49224 1.50130 1.21913 0.90603 0.86883 0.97207 0.86506 1.22691 0.97279 0.97888 0.99802 1.22117 0.92998 0.99882 0.98355 1.19562 0.92340 0.92233 0.93843 0.97018 1.21504 1.02243 0.92717 1.40296 0.92611 1.25716 1.01376 0.95086 0.96481 1.70077 1.37196 1.00236 1.48231 0.85773 0.80416 0.77377 0.79018 1.19485 1.21487 1.20003 1.22641 0.92095 0.98519 1.01692 0.91705 0.87659 0.93899 0.89253 0.89312 0.89004 0.90101 0.89271 0.87420 0.74397 0.91548 0.92420 0.94264 0.95419 0.93299 0.91723 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 10.85 113.37 1.23 1.41 16 2 O -0.40 -8.16 10.26 -148.98 -1.53 -9.69 16 3 C 0.10 1.84 2.97 31.32 0.09 1.94 16 4 H 0.07 1.32 7.34 -2.39 -0.02 1.30 16 5 C -0.14 -1.95 6.61 31.32 0.21 -1.75 16 6 C -0.11 -1.50 6.83 31.67 0.22 -1.29 16 7 C -0.12 -2.11 4.33 31.88 0.14 -1.97 16 8 C -0.58 -11.64 3.33 31.67 0.11 -11.53 16 9 H 0.17 2.96 8.08 -2.38 -0.02 2.94 16 10 S 2.61 71.09 4.96 -56.49 -0.28 70.81 16 11 O -0.99 -32.93 18.08 -127.65 -2.31 -35.23 16 12 O -0.98 -31.67 17.44 -127.65 -2.23 -33.90 16 13 N -1.10 -30.20 5.29 -166.37 -0.88 -31.08 16 14 C 0.14 4.28 2.79 45.72 0.13 4.40 16 15 H 0.12 2.92 3.69 -2.39 -0.01 2.91 16 16 C -0.14 -5.08 6.60 31.32 0.21 -4.87 16 17 C -0.09 -4.38 5.57 31.67 0.18 -4.20 16 18 C 0.04 1.83 2.81 -10.25 -0.03 1.80 16 19 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 20 C -0.53 -27.90 8.55 25.60 0.22 -27.68 16 21 H 0.06 2.85 7.78 -2.91 -0.02 2.83 16 22 C 0.01 0.66 5.33 84.65 0.45 1.11 16 23 N -0.92 -52.48 12.01 21.45 0.26 -52.22 16 24 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 C -0.11 -3.86 5.95 31.67 0.19 -3.67 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.04 0.64 8.10 -2.39 -0.02 0.62 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.14 7.96 -2.38 -0.02 1.12 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.60 6.84 -2.38 -0.02 1.59 16 37 H 0.11 1.72 7.03 -2.39 -0.02 1.70 16 38 H 0.42 10.88 8.58 -96.74 -0.83 10.05 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.06 2.11 7.92 -2.38 -0.02 2.09 16 41 H 0.04 2.00 7.37 -2.39 -0.02 1.99 16 42 H 0.03 1.33 8.05 -2.39 -0.02 1.31 16 43 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 44 H 0.06 2.27 7.72 -2.39 -0.02 2.25 16 45 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -69.90 361.32 -1.46 -71.35 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.15 Total: 21.30 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 3.33 Total: -46.29 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -0.62 Total: -83.30 kcal Atomic # 8 Polarization: -72.76 SS G_CDS: -6.06 Total: -78.82 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 71.09 SS G_CDS: -0.28 Total: 70.81 kcal Total: -69.90 -1.46 -71.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601425657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.253 kcal (2) G-P(sol) polarization free energy of solvation -69.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds