Wall clock time and date at job start Tue Mar 31 2020 11:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00154 * 2 1 4 4 H 1.09006 * 110.54004 * 27.38877 * 3 2 1 5 5 C 1.55238 * 110.46638 * 264.81073 * 3 2 1 6 6 C 1.54894 * 102.58338 * 203.39157 * 5 3 2 7 7 C 1.54266 * 104.31305 * 37.93170 * 6 5 3 8 8 C 1.53869 * 106.60031 * 336.32486 * 7 6 5 9 9 H 1.08999 * 110.04012 * 119.28327 * 8 7 6 10 10 S 1.81408 * 110.03114 * 240.66919 * 8 7 6 11 11 O 1.42094 * 110.54351 * 55.16586 * 10 8 7 12 12 O 1.42096 * 110.54377 * 191.92224 * 10 8 7 13 13 N 1.65604 * 104.44646 * 303.54157 * 10 8 7 14 14 C 1.46927 * 120.62798 * 90.00053 * 13 10 8 15 15 C 1.53189 * 108.77364 * 126.37201 * 14 13 10 16 16 C 1.53035 * 109.31684 * 54.63403 * 15 14 13 17 17 C 1.53042 * 109.53749 * 298.63521 * 16 15 14 18 18 H 1.08998 * 109.49780 * 301.41139 * 17 16 15 19 19 C 1.50704 * 109.49870 * 181.34759 * 17 16 15 20 20 H 1.07998 * 119.99847 * 239.99834 * 19 17 16 21 21 C 1.37868 * 119.99846 * 60.00079 * 19 17 16 22 22 N 1.31516 * 120.00077 * 359.97438 * 21 19 17 23 23 Si 1.86805 * 120.00063 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46944 * 89.99840 * 23 21 19 25 25 H 1.48498 * 109.47136 * 209.99987 * 23 21 19 26 26 H 1.48501 * 109.46969 * 330.00341 * 23 21 19 27 27 C 1.46928 * 120.63151 * 269.72392 * 13 10 8 28 28 H 1.09009 * 109.47196 * 299.99893 * 1 2 3 29 29 H 1.09000 * 109.47381 * 59.99564 * 1 2 3 30 30 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 31 31 H 1.08996 * 110.89448 * 85.10721 * 5 3 2 32 32 H 1.08993 * 110.76342 * 321.62387 * 5 3 2 33 33 H 1.09002 * 110.48891 * 279.18596 * 6 5 3 34 34 H 1.08998 * 110.48494 * 156.67683 * 6 5 3 35 35 H 1.09001 * 110.03084 * 95.60669 * 7 6 5 36 36 H 1.08996 * 110.03108 * 216.98559 * 7 6 5 37 37 H 1.09004 * 109.58698 * 246.15551 * 14 13 10 38 38 H 1.08991 * 109.58942 * 6.43689 * 14 13 10 39 39 H 1.09006 * 109.49855 * 174.58476 * 15 14 13 40 40 H 1.09003 * 109.49968 * 294.67797 * 15 14 13 41 41 H 1.09006 * 109.46089 * 58.65175 * 16 15 14 42 42 H 1.08996 * 109.46465 * 178.63054 * 16 15 14 43 43 H 0.97007 * 120.00039 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.58545 * 353.41394 * 27 13 10 45 45 H 1.08999 * 109.58850 * 113.84109 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3379 2.0235 0.4696 5 6 2.3512 1.7478 -1.4484 6 6 3.4601 2.8062 -1.2258 7 6 4.2949 2.2438 -0.0569 8 6 3.3732 1.2896 0.7225 9 1 3.7876 0.2815 0.7158 10 16 3.1792 1.8699 2.4303 11 8 2.7138 3.2123 2.4510 12 8 2.5647 0.8691 3.2302 13 7 4.7266 1.9650 3.0126 14 6 5.5022 3.2055 2.8776 15 6 6.0175 3.6177 4.2601 16 6 6.7959 2.4538 4.8779 17 6 5.8667 1.2498 5.0480 18 1 5.0246 1.5268 5.6822 19 6 6.6254 0.1151 5.6868 20 1 6.7273 -0.8263 5.1675 21 6 7.1894 0.2790 6.9342 22 7 7.0657 1.4256 7.5663 23 14 8.1293 -1.1276 7.7264 24 1 9.5612 -1.0449 7.3416 25 1 8.0075 -1.0346 9.2034 26 1 7.5665 -2.4216 7.2637 27 6 5.3477 0.8125 3.6794 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.4830 2.1941 -1.9331 32 1 2.7303 0.9075 -2.0299 33 1 3.0218 3.7666 -0.9543 34 1 4.0753 2.9079 -2.1198 35 1 5.1568 1.6988 -0.4419 36 1 4.6258 3.0561 0.5903 37 1 6.3460 3.0379 2.2082 38 1 4.8657 3.9923 2.4730 39 1 6.6739 4.4823 4.1608 40 1 5.1740 3.8726 4.9017 41 1 7.6247 2.1833 4.2236 42 1 7.1843 2.7528 5.8514 43 1 7.4622 1.5408 8.4441 44 1 4.6084 0.0216 3.8062 45 1 6.1785 0.4457 3.0767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601462220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:27 Heat of formation + Delta-G solvation = -127.179429 kcal Electronic energy + Delta-G solvation = -26544.381636 eV Core-core repulsion = 22881.557859 eV Total energy + Delta-G solvation = -3662.823777 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.26039 -37.73755 -36.97371 -36.17733 -35.64324 -33.30495 -31.10391 -30.12153 -29.39309 -28.59515 -26.31021 -25.10154 -23.62057 -21.76152 -21.24138 -21.05770 -19.47529 -18.40963 -17.51923 -17.20618 -16.76836 -16.13687 -15.69628 -15.34876 -15.04446 -14.62805 -14.51077 -14.01379 -13.81021 -13.43906 -13.33211 -12.97213 -12.78725 -12.77096 -12.61179 -12.16130 -12.05623 -11.80772 -11.72193 -11.64347 -11.44776 -11.32739 -11.18120 -10.99594 -10.94738 -10.80596 -10.68532 -10.41717 -10.18044 -9.90574 -9.82729 -9.74789 -9.32941 -8.80357 -8.40860 -8.12695 -5.97899 -4.05327 0.46098 2.91771 3.31639 3.36702 3.38815 3.42341 3.92653 4.13872 4.18235 4.43940 4.51786 4.57311 4.77625 4.91257 5.06588 5.11775 5.16695 5.21608 5.26267 5.32288 5.35731 5.47713 5.52639 5.64544 5.69040 5.71340 5.74564 5.83002 5.98925 6.04740 6.25286 6.36399 6.51073 6.65730 6.67378 6.87297 6.91623 7.05470 7.25933 7.47829 7.74034 8.00147 8.13165 8.42373 8.98120 9.59248 11.07551 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.003977 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.088104 B = 7039.198234 C = 7599.016084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.375 6.375 3 C 0.105 3.895 4 H 0.072 0.928 5 C -0.134 4.134 6 C -0.125 4.125 7 C -0.095 4.095 8 C -0.607 4.607 9 H 0.149 0.851 10 S 2.604 3.396 11 O -0.960 6.960 12 O -0.947 6.947 13 N -0.989 5.989 14 C 0.122 3.878 15 C -0.131 4.131 16 C -0.110 4.110 17 C 0.041 3.959 18 H 0.031 0.969 19 C -0.514 4.514 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.888 5.888 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.124 3.876 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.095 0.905 43 H 0.260 0.740 44 H 0.079 0.921 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.690 3.225 -18.492 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.293 6.293 3 C 0.045 3.955 4 H 0.090 0.910 5 C -0.173 4.173 6 C -0.162 4.162 7 C -0.133 4.133 8 C -0.714 4.714 9 H 0.167 0.833 10 S 2.697 3.303 11 O -0.951 6.951 12 O -0.937 6.937 13 N -0.828 5.828 14 C -0.003 4.003 15 C -0.170 4.170 16 C -0.148 4.148 17 C 0.021 3.979 18 H 0.050 0.950 19 C -0.553 4.553 20 H 0.076 0.924 21 C -0.138 4.138 22 N -0.527 5.527 23 Si 0.721 3.279 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 C 0.000 4.000 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.324 3.326 -17.862 19.985 hybrid contribution 0.764 -0.847 0.008 1.141 sum -7.560 2.479 -17.853 19.546 Atomic orbital electron populations 1.22910 0.80555 1.03467 1.00297 1.87969 1.20093 1.26374 1.94890 1.22665 0.91053 0.85286 0.96449 0.90991 1.22965 0.99134 0.99400 0.95770 1.22319 0.96986 0.98607 0.98333 1.21812 0.97413 0.96971 0.97108 1.31485 1.03078 1.12247 1.24584 0.83256 1.05276 0.74052 0.74600 0.76382 1.93542 1.79559 1.35198 1.86753 1.93596 1.74502 1.61474 1.64106 1.57585 1.33621 1.20853 1.70758 1.21471 0.95111 0.84681 0.99062 1.21943 1.00350 0.99453 0.95250 1.21588 0.97411 0.94238 1.01526 1.18858 0.95255 0.94122 0.89632 0.95044 1.21090 1.33832 0.98385 1.02019 0.92446 1.24938 0.96244 0.95659 0.96990 1.69882 1.45047 1.23544 1.14185 0.86589 0.80100 0.82757 0.78498 1.20764 1.21282 1.19872 1.21768 0.96825 0.85407 0.96008 0.93510 0.93732 0.88971 0.90789 0.89870 0.90587 0.90439 0.89612 0.90534 0.92138 0.90381 0.92579 0.92264 0.94622 0.88718 0.92989 0.90281 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.85 101.05 1.10 1.33 16 2 O -0.37 -4.81 10.42 -35.23 -0.37 -5.17 16 3 C 0.11 1.26 2.91 -24.88 -0.07 1.19 16 4 H 0.07 0.84 7.44 -51.93 -0.39 0.45 16 5 C -0.13 -1.23 6.65 -24.55 -0.16 -1.40 16 6 C -0.12 -1.09 6.82 -25.07 -0.17 -1.26 16 7 C -0.09 -0.99 6.34 -25.62 -0.16 -1.15 16 8 C -0.61 -7.78 3.40 -25.62 -0.09 -7.87 16 9 H 0.15 1.85 8.07 -51.93 -0.42 1.43 16 10 S 2.60 44.56 4.59 -107.50 -0.49 44.06 16 11 O -0.96 -17.58 16.45 -57.54 -0.95 -18.53 16 12 O -0.95 -19.76 16.58 -57.54 -0.95 -20.71 16 13 N -0.99 -17.67 3.06 -113.77 -0.35 -18.02 16 14 C 0.12 1.97 4.93 -3.71 -0.02 1.95 16 15 C -0.13 -2.46 6.08 -26.62 -0.16 -2.63 16 16 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 17 C 0.04 1.03 2.24 -91.87 -0.21 0.82 16 18 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.51 -13.87 8.57 -34.44 -0.30 -14.16 16 20 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 22 N -0.89 -25.14 11.31 55.43 0.63 -24.51 16 23 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.12 2.54 5.63 -3.93 -0.02 2.52 16 28 H 0.05 0.45 8.11 -51.92 -0.42 0.02 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.80 5.34 -51.93 -0.28 0.53 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.13 6.36 -51.93 -0.33 0.80 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.09 2.44 6.04 -51.93 -0.31 2.12 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.08 1.67 6.85 -51.93 -0.36 1.31 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -32.50 358.05 -10.14 -42.63 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.54 Total: 0.42 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -0.49 Total: -21.64 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.28 Total: -42.53 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -2.27 Total: -44.41 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 44.56 SS G_CDS: -0.49 Total: 44.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.50 -10.14 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601462220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.545 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds