Wall clock time and date at job start Tue Mar 31 2020 11:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00154 * 2 1 4 4 H 1.09006 * 110.54004 * 27.38877 * 3 2 1 5 5 C 1.55238 * 110.46638 * 264.81073 * 3 2 1 6 6 C 1.54894 * 102.58338 * 203.39157 * 5 3 2 7 7 C 1.54266 * 104.31305 * 37.93170 * 6 5 3 8 8 C 1.53869 * 106.60031 * 336.32486 * 7 6 5 9 9 H 1.08999 * 110.04012 * 119.28327 * 8 7 6 10 10 S 1.81408 * 110.03114 * 240.66919 * 8 7 6 11 11 O 1.42094 * 110.54351 * 55.16586 * 10 8 7 12 12 O 1.42096 * 110.54377 * 191.92224 * 10 8 7 13 13 N 1.65604 * 104.44646 * 303.54157 * 10 8 7 14 14 C 1.46927 * 120.62798 * 90.00053 * 13 10 8 15 15 C 1.53189 * 108.77364 * 126.37201 * 14 13 10 16 16 C 1.53035 * 109.31684 * 54.63403 * 15 14 13 17 17 C 1.53042 * 109.53749 * 298.63521 * 16 15 14 18 18 H 1.08998 * 109.49780 * 301.41139 * 17 16 15 19 19 C 1.50704 * 109.49870 * 181.34759 * 17 16 15 20 20 H 1.07998 * 119.99847 * 239.99834 * 19 17 16 21 21 C 1.37868 * 119.99846 * 60.00079 * 19 17 16 22 22 N 1.31516 * 120.00077 * 359.97438 * 21 19 17 23 23 Si 1.86805 * 120.00063 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46944 * 89.99840 * 23 21 19 25 25 H 1.48498 * 109.47136 * 209.99987 * 23 21 19 26 26 H 1.48501 * 109.46969 * 330.00341 * 23 21 19 27 27 C 1.46928 * 120.63151 * 269.72392 * 13 10 8 28 28 H 1.09009 * 109.47196 * 299.99893 * 1 2 3 29 29 H 1.09000 * 109.47381 * 59.99564 * 1 2 3 30 30 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 31 31 H 1.08996 * 110.89448 * 85.10721 * 5 3 2 32 32 H 1.08993 * 110.76342 * 321.62387 * 5 3 2 33 33 H 1.09002 * 110.48891 * 279.18596 * 6 5 3 34 34 H 1.08998 * 110.48494 * 156.67683 * 6 5 3 35 35 H 1.09001 * 110.03084 * 95.60669 * 7 6 5 36 36 H 1.08996 * 110.03108 * 216.98559 * 7 6 5 37 37 H 1.09004 * 109.58698 * 246.15551 * 14 13 10 38 38 H 1.08991 * 109.58942 * 6.43689 * 14 13 10 39 39 H 1.09006 * 109.49855 * 174.58476 * 15 14 13 40 40 H 1.09003 * 109.49968 * 294.67797 * 15 14 13 41 41 H 1.09006 * 109.46089 * 58.65175 * 16 15 14 42 42 H 1.08996 * 109.46465 * 178.63054 * 16 15 14 43 43 H 0.97007 * 120.00039 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.58545 * 353.41394 * 27 13 10 45 45 H 1.08999 * 109.58850 * 113.84109 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3379 2.0235 0.4696 5 6 2.3512 1.7478 -1.4484 6 6 3.4601 2.8062 -1.2258 7 6 4.2949 2.2438 -0.0569 8 6 3.3732 1.2896 0.7225 9 1 3.7876 0.2815 0.7158 10 16 3.1792 1.8699 2.4303 11 8 2.7138 3.2123 2.4510 12 8 2.5647 0.8691 3.2302 13 7 4.7266 1.9650 3.0126 14 6 5.5022 3.2055 2.8776 15 6 6.0175 3.6177 4.2601 16 6 6.7959 2.4538 4.8779 17 6 5.8667 1.2498 5.0480 18 1 5.0246 1.5268 5.6822 19 6 6.6254 0.1151 5.6868 20 1 6.7273 -0.8263 5.1675 21 6 7.1894 0.2790 6.9342 22 7 7.0657 1.4256 7.5663 23 14 8.1293 -1.1276 7.7264 24 1 9.5612 -1.0449 7.3416 25 1 8.0075 -1.0346 9.2034 26 1 7.5665 -2.4216 7.2637 27 6 5.3477 0.8125 3.6794 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.4830 2.1941 -1.9331 32 1 2.7303 0.9075 -2.0299 33 1 3.0218 3.7666 -0.9543 34 1 4.0753 2.9079 -2.1198 35 1 5.1568 1.6988 -0.4419 36 1 4.6258 3.0561 0.5903 37 1 6.3460 3.0379 2.2082 38 1 4.8657 3.9923 2.4730 39 1 6.6739 4.4823 4.1608 40 1 5.1740 3.8726 4.9017 41 1 7.6247 2.1833 4.2236 42 1 7.1843 2.7528 5.8514 43 1 7.4622 1.5408 8.4441 44 1 4.6084 0.0216 3.8062 45 1 6.1785 0.4457 3.0767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601462220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:26 Heat of formation + Delta-G solvation = -149.874014 kcal Electronic energy + Delta-G solvation = -26545.365747 eV Core-core repulsion = 22881.557859 eV Total energy + Delta-G solvation = -3663.807888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.11478 -39.33456 -38.38129 -37.12512 -37.02071 -35.21061 -32.74943 -31.89712 -30.25952 -29.38834 -27.12308 -27.00712 -25.19688 -23.41209 -22.15831 -21.90055 -21.11974 -19.76730 -18.83589 -18.44785 -18.07474 -17.80694 -17.02060 -16.57988 -16.25793 -15.92500 -15.44659 -15.36233 -15.14981 -14.88018 -14.64405 -14.43981 -14.28878 -13.93017 -13.81704 -13.56877 -13.30999 -13.25294 -12.92454 -12.81859 -12.75376 -12.70178 -12.52963 -12.38966 -12.14401 -12.10030 -11.85009 -11.77002 -11.75820 -11.55663 -11.35803 -11.05063 -10.77508 -10.66864 -10.40282 -9.70528 -8.06382 -6.21982 -0.85538 1.43057 1.44580 1.54147 1.57941 2.45087 2.48670 2.81518 3.03171 3.17761 3.20261 3.49330 3.65390 3.82358 4.02704 4.10470 4.27820 4.28806 4.32330 4.37480 4.45003 4.45536 4.57230 4.62607 4.67213 4.79138 4.79998 4.84862 4.88600 4.91837 4.98191 5.06138 5.10069 5.14423 5.28738 5.35135 5.36340 5.54472 5.65986 5.74947 5.99475 6.04541 6.19165 6.38528 6.90220 7.46265 8.97647 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.003977 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.088104 B = 7039.198234 C = 7599.016084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.397 6.397 3 C 0.090 3.910 4 H 0.069 0.931 5 C -0.126 4.126 6 C -0.123 4.123 7 C -0.101 4.101 8 C -0.576 4.576 9 H 0.157 0.843 10 S 2.595 3.405 11 O -0.980 6.980 12 O -0.999 6.999 13 N -0.995 5.995 14 C 0.120 3.880 15 C -0.129 4.129 16 C -0.102 4.102 17 C 0.034 3.966 18 H -0.021 1.021 19 C -0.534 4.534 20 H 0.061 0.939 21 C 0.012 3.988 22 N -0.918 5.918 23 Si 0.957 3.043 24 H -0.270 1.270 25 H -0.288 1.288 26 H -0.269 1.269 27 C 0.136 3.864 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.031 0.969 41 H 0.046 0.954 42 H 0.058 0.942 43 H 0.260 0.740 44 H 0.064 0.936 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.823 3.194 -22.038 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.317 6.317 3 C 0.031 3.969 4 H 0.087 0.913 5 C -0.165 4.165 6 C -0.161 4.161 7 C -0.139 4.139 8 C -0.689 4.689 9 H 0.175 0.825 10 S 2.694 3.306 11 O -0.971 6.971 12 O -0.990 6.990 13 N -0.833 5.833 14 C -0.004 4.004 15 C -0.169 4.169 16 C -0.140 4.140 17 C 0.014 3.986 18 H -0.003 1.003 19 C -0.572 4.572 20 H 0.079 0.921 21 C -0.186 4.186 22 N -0.557 5.557 23 Si 0.783 3.217 24 H -0.196 1.196 25 H -0.214 1.214 26 H -0.193 1.193 27 C 0.011 3.989 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.462 3.323 -21.356 22.865 hybrid contribution 0.396 -0.828 1.081 1.418 sum -7.066 2.495 -20.275 21.615 Atomic orbital electron populations 1.23145 0.79194 1.04706 1.01176 1.87925 1.21721 1.26896 1.95128 1.22960 0.90315 0.85231 0.98444 0.91268 1.22975 1.00214 0.99809 0.93460 1.22391 0.96834 0.98301 0.98546 1.22031 0.97822 0.96630 0.97457 1.31176 1.05086 1.13029 1.19618 0.82492 1.05326 0.73327 0.73738 0.78171 1.93503 1.79699 1.36018 1.87834 1.93527 1.75573 1.62489 1.67383 1.57461 1.33483 1.20738 1.71656 1.21674 0.96565 0.84450 0.97700 1.21901 0.99490 0.99014 0.96447 1.21375 0.97559 0.94817 1.00232 1.18840 0.93820 0.94715 0.91227 1.00269 1.21504 1.33897 0.99190 1.02654 0.92090 1.25756 0.97244 0.97992 0.97651 1.70049 1.45920 1.25375 1.14363 0.85574 0.79146 0.79800 0.77221 1.19577 1.21420 1.19308 1.21402 0.97148 0.85948 0.94353 0.94293 0.91204 0.87710 0.88812 0.89236 0.90378 0.87814 0.87319 0.90437 0.88383 0.88393 0.89556 0.95037 0.93545 0.92353 0.93126 0.91735 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 10.85 113.37 1.23 1.47 16 2 O -0.40 -9.60 10.42 -148.98 -1.55 -11.15 16 3 C 0.09 1.97 2.91 31.79 0.09 2.07 16 4 H 0.07 1.53 7.44 -2.38 -0.02 1.51 16 5 C -0.13 -1.82 6.65 32.01 0.21 -1.60 16 6 C -0.12 -1.59 6.82 31.67 0.22 -1.38 16 7 C -0.10 -1.70 6.34 31.32 0.20 -1.50 16 8 C -0.58 -13.55 3.40 31.32 0.11 -13.44 16 9 H 0.16 3.54 8.07 -2.39 -0.02 3.52 16 10 S 2.60 89.07 4.59 -56.49 -0.26 88.81 16 11 O -0.98 -35.90 16.45 -127.65 -2.10 -38.00 16 12 O -1.00 -43.72 16.58 -127.65 -2.12 -45.84 16 13 N -1.00 -35.19 3.06 -513.85 -1.57 -36.76 16 14 C 0.12 3.65 4.93 86.36 0.43 4.08 16 15 C -0.13 -4.86 6.08 30.67 0.19 -4.67 16 16 C -0.10 -4.72 4.96 30.62 0.15 -4.56 16 17 C 0.03 1.75 2.24 -11.60 -0.03 1.73 16 18 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 19 C -0.53 -29.56 8.57 25.60 0.22 -29.34 16 20 H 0.06 3.24 7.75 -2.91 -0.02 3.21 16 21 C 0.01 0.68 5.30 84.65 0.45 1.13 16 22 N -0.92 -54.00 11.31 21.44 0.24 -53.76 16 23 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 27 C 0.14 5.67 5.63 86.22 0.49 6.16 16 28 H 0.04 0.73 8.11 -2.38 -0.02 0.72 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.33 5.34 -2.39 -0.01 1.32 16 37 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.10 2.61 6.36 -2.39 -0.02 2.60 16 39 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 40 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.06 3.13 6.04 -2.39 -0.01 3.11 16 43 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 44 H 0.06 2.83 6.85 -2.39 -0.02 2.82 16 45 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -74.88 358.05 -0.42 -75.31 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.96 Total: 15.35 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 3.95 Total: -39.87 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -1.33 Total: -90.52 kcal Atomic # 8 Polarization: -89.22 SS G_CDS: -5.77 Total: -94.99 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 89.07 SS G_CDS: -0.26 Total: 88.81 kcal Total: -74.88 -0.42 -75.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601462220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.565 kcal (2) G-P(sol) polarization free energy of solvation -74.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds