Wall clock time and date at job start Tue Mar 31 2020 11:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46894 * 111.00334 * 2 1 4 4 C 1.50696 * 109.47134 * 293.95748 * 3 2 1 5 5 N 1.30501 * 125.64816 * 270.26791 * 4 3 2 6 6 C 1.34132 * 109.25792 * 180.14872 * 5 4 3 7 7 C 1.34667 * 108.01653 * 359.61889 * 6 5 4 8 8 N 1.35040 * 125.65323 * 90.00157 * 4 3 2 9 9 C 1.46500 * 126.39450 * 359.97438 * 8 4 3 10 10 C 1.53001 * 109.46805 * 85.03105 * 9 8 4 11 11 F 1.39898 * 109.47259 * 60.00161 * 10 9 8 12 12 F 1.39908 * 109.46760 * 179.97438 * 10 9 8 13 13 F 1.39898 * 109.47016 * 299.99386 * 10 9 8 14 14 C 1.46902 * 111.00071 * 123.96090 * 2 1 3 15 15 C 1.52998 * 109.47370 * 72.13986 * 14 2 1 16 16 C 1.50698 * 115.55084 * 55.63125 * 15 14 2 17 17 H 1.07995 * 120.00181 * 265.15735 * 16 15 14 18 18 C 1.37881 * 120.00078 * 85.14959 * 16 15 14 19 19 N 1.31514 * 119.99726 * 4.50536 * 18 16 15 20 20 Si 1.86799 * 120.00146 * 184.50211 * 18 16 15 21 21 H 1.48494 * 109.46937 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46793 * 119.99928 * 20 18 16 23 23 H 1.48503 * 109.47035 * 240.00327 * 20 18 16 24 24 C 1.53002 * 117.49899 * 269.95752 * 15 14 2 25 25 C 1.53004 * 117.49795 * 201.30111 * 15 14 2 26 26 H 1.08995 * 109.47174 * 57.17472 * 1 2 3 27 27 H 1.09003 * 109.47511 * 177.17791 * 1 2 3 28 28 H 1.09004 * 109.46786 * 297.17539 * 1 2 3 29 29 H 1.08998 * 109.47313 * 173.95118 * 3 2 1 30 30 H 1.08998 * 109.47019 * 53.95870 * 3 2 1 31 31 H 1.07995 * 125.99339 * 179.88620 * 6 5 4 32 32 H 1.08003 * 126.59365 * 180.24784 * 7 6 5 33 33 H 1.09000 * 109.47289 * 205.02926 * 9 8 4 34 34 H 1.08996 * 109.47555 * 325.02838 * 9 8 4 35 35 H 1.08997 * 109.47315 * 192.14484 * 14 2 1 36 36 H 1.09002 * 109.46523 * 312.14103 * 14 2 1 37 37 H 0.96999 * 120.00209 * 185.00172 * 19 18 16 38 38 H 1.09001 * 117.50138 * 0.02562 * 24 15 14 39 39 H 1.08997 * 117.49259 * 145.02365 * 24 15 14 40 40 H 1.08997 * 117.49859 * 214.98646 * 25 15 14 41 41 H 1.08999 * 117.49869 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6369 2.0471 -1.2984 5 7 2.3584 2.0366 -2.3858 6 6 1.7317 2.7418 -3.3392 7 6 0.5741 3.1998 -2.8256 8 7 0.5135 2.7595 -1.5310 9 6 -0.5682 3.0131 -0.5762 10 6 -0.2166 4.2304 0.2813 11 9 -0.0501 5.3488 -0.5426 12 9 -1.2500 4.4730 1.1928 13 9 0.9713 3.9830 0.9775 14 6 1.9954 -0.7661 1.1375 15 6 1.7652 -2.2594 0.8970 16 6 2.3320 -2.8058 -0.3880 17 1 1.7070 -2.8797 -1.2656 18 6 3.6487 -3.2112 -0.4433 19 7 4.3851 -3.2045 0.6463 20 14 4.3866 -3.7700 -2.0659 21 1 3.3577 -3.6840 -3.1332 22 1 5.5351 -2.8956 -2.4146 23 1 4.8535 -5.1741 -1.9399 24 6 0.4534 -2.8626 1.4033 25 6 1.7687 -3.1805 2.1187 26 1 -0.3633 0.5570 -0.8635 27 1 -0.3634 -1.0264 -0.0506 28 1 -0.3633 0.4694 0.9143 29 1 3.0797 1.3443 0.1083 30 1 1.5612 1.9272 0.8310 31 1 2.0902 2.9091 -4.3441 32 1 -0.1647 3.7991 -3.3370 33 1 -1.4939 3.2058 -1.1185 34 1 -0.6981 2.1418 0.0657 35 1 3.0635 -0.5752 1.2410 36 1 1.4818 -0.4616 2.0494 37 1 5.3295 -3.4198 0.5948 38 1 -0.2458 -2.1954 1.9074 39 1 0.0006 -3.6548 0.8071 40 1 2.1808 -4.1818 1.9929 41 1 1.9355 -2.7227 3.0937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602771472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:26 Heat of formation + Delta-G solvation = -42.274870 kcal Electronic energy + Delta-G solvation = -28020.823563 eV Core-core repulsion = 23716.673583 eV Total energy + Delta-G solvation = -4304.149980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.51734 -48.04125 -47.98629 -42.14828 -37.71736 -35.35014 -34.66533 -31.75126 -30.30629 -29.33739 -27.22924 -26.47406 -25.14703 -24.08484 -22.21762 -21.41205 -21.04735 -19.81629 -19.02068 -18.91106 -18.84672 -18.21049 -16.88964 -15.99406 -15.35889 -15.23607 -14.87020 -14.72222 -14.63581 -14.40595 -14.31309 -14.20225 -14.11247 -14.03093 -13.91110 -13.66907 -13.32402 -13.10413 -12.61455 -12.59307 -12.35380 -11.65713 -11.38415 -11.23101 -11.13194 -10.79603 -10.60867 -10.35168 -10.08719 -9.83249 -9.78013 -9.37557 -8.86244 -8.39511 -8.25265 -7.98778 -7.58409 -5.86935 -3.88399 1.69799 2.21969 2.49329 3.23579 3.31350 3.43073 3.44511 3.51508 3.56935 3.80156 4.27693 4.41222 4.55610 4.58628 4.66511 4.74352 5.28752 5.38768 5.43625 5.46262 5.56599 5.64050 5.75109 5.95163 6.12616 6.17372 6.24745 6.29495 6.46939 6.56075 6.73654 6.74876 6.89225 7.04052 7.16103 7.46165 7.54672 7.66374 7.88113 8.06202 8.22675 8.60251 9.10053 9.75318 11.22478 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.004397 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.419066 B = 6366.164309 C = 7401.420094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.504 5.504 3 C 0.128 3.872 4 C 0.248 3.752 5 N -0.462 5.462 6 C -0.017 4.017 7 C -0.064 4.064 8 N -0.467 5.467 9 C 0.054 3.946 10 C 0.440 3.560 11 F -0.176 7.176 12 F -0.175 7.175 13 F -0.171 7.171 14 C 0.105 3.895 15 C 0.053 3.947 16 C -0.460 4.460 17 H 0.057 0.943 18 C 0.070 3.930 19 N -0.889 5.889 20 Si 0.886 3.114 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.290 1.290 24 C -0.219 4.219 25 C -0.150 4.150 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.010 0.990 29 H 0.108 0.892 30 H 0.044 0.956 31 H 0.171 0.829 32 H 0.175 0.825 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.078 0.922 36 H 0.005 0.995 37 H 0.256 0.744 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.800 15.722 -0.857 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.228 5.228 3 C -0.001 4.001 4 C -0.015 4.015 5 N -0.179 5.179 6 C -0.164 4.164 7 C -0.193 4.193 8 N -0.154 5.154 9 C -0.072 4.072 10 C 0.384 3.616 11 F -0.158 7.158 12 F -0.157 7.157 13 F -0.152 7.152 14 C -0.021 4.021 15 C 0.052 3.948 16 C -0.498 4.498 17 H 0.075 0.925 18 C -0.132 4.132 19 N -0.527 5.527 20 Si 0.715 3.285 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.216 1.216 24 C -0.256 4.256 25 C -0.189 4.189 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.029 0.971 29 H 0.126 0.874 30 H 0.062 0.938 31 H 0.189 0.811 32 H 0.192 0.808 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.096 0.904 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.776 15.046 -1.241 18.548 hybrid contribution -0.633 0.850 0.011 1.060 sum -11.408 15.896 -1.230 19.605 Atomic orbital electron populations 1.22627 0.89265 1.03532 0.97394 1.61686 1.05992 1.09148 1.45955 1.20620 1.02752 0.89175 0.87581 1.23459 0.83560 0.96469 0.97973 1.70407 1.29823 1.18787 0.98888 1.22374 0.93405 1.00691 0.99897 1.22635 1.03294 1.08507 0.84865 1.45163 1.17222 1.42304 1.10685 1.23198 0.92713 0.97289 0.94003 1.20884 0.75248 0.85671 0.79802 1.93222 1.95357 1.55387 1.71825 1.93226 1.58668 1.95070 1.68691 1.93233 1.47747 1.93893 1.80358 1.21750 0.99287 0.94548 0.86562 1.18789 0.93100 0.88385 0.94559 1.20249 0.95725 1.39340 0.94441 0.92471 1.24876 0.97393 0.95190 0.95708 1.70006 1.06368 1.49845 1.26498 0.86627 0.79412 0.77705 0.84775 1.19877 1.21020 1.21622 1.23067 0.91660 1.04463 1.06443 1.22504 0.98627 1.02157 0.95564 0.93172 0.89491 0.97141 0.87418 0.93824 0.81141 0.80770 0.84460 0.84045 0.90380 0.97648 0.93414 0.92289 0.90635 0.89640 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 7.68 60.06 0.46 0.78 16 2 N -0.50 -9.64 4.42 -244.38 -1.08 -10.72 16 3 C 0.13 2.16 5.08 -4.98 -0.03 2.13 16 4 C 0.25 4.03 6.20 -155.42 -0.96 3.07 16 5 N -0.46 -8.41 11.25 -10.82 -0.12 -8.54 16 6 C -0.02 -0.24 11.87 -17.81 -0.21 -0.45 16 7 C -0.06 -0.74 11.58 -16.56 -0.19 -0.93 16 8 N -0.47 -5.82 2.25 -113.91 -0.26 -6.08 16 9 C 0.05 0.48 5.00 -4.04 -0.02 0.46 16 10 C 0.44 4.35 3.29 37.16 0.12 4.47 16 11 F -0.18 -1.87 17.23 2.25 0.04 -1.83 16 12 F -0.18 -1.63 17.32 2.25 0.04 -1.59 16 13 F -0.17 -2.07 14.73 2.25 0.03 -2.04 16 14 C 0.11 2.23 4.88 -3.82 -0.02 2.21 16 15 C 0.05 1.24 1.25 -155.66 -0.19 1.05 16 16 C -0.46 -12.44 8.54 -34.44 -0.29 -12.74 16 17 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 18 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 19 N -0.89 -25.23 12.65 55.43 0.70 -24.52 16 20 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 21 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C -0.22 -4.59 8.36 -26.69 -0.22 -4.81 16 25 C -0.15 -3.46 9.17 -26.69 -0.24 -3.71 16 26 H 0.05 0.72 5.52 -51.93 -0.29 0.43 16 27 H 0.09 1.51 6.16 -51.93 -0.32 1.19 16 28 H 0.01 0.14 7.27 -51.93 -0.38 -0.24 16 29 H 0.11 1.95 7.86 -51.93 -0.41 1.54 16 30 H 0.04 0.64 5.70 -51.93 -0.30 0.34 16 31 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.18 1.34 8.06 -52.48 -0.42 0.91 16 33 H 0.14 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.14 1.26 4.56 -51.93 -0.24 1.02 16 35 H 0.08 1.82 7.81 -51.93 -0.41 1.41 16 36 H 0.01 0.11 7.99 -51.93 -0.42 -0.31 16 37 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 38 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 39 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -31.55 344.77 -7.62 -39.17 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.25 Total: 0.51 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.90 Total: -6.63 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.76 Total: -49.85 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.11 Total: -5.46 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.55 -7.62 -39.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602771472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.107 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds