Wall clock time and date at job start Tue Mar 31 2020 11:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46894 * 111.00334 * 2 1 4 4 C 1.50696 * 109.47134 * 293.95748 * 3 2 1 5 5 N 1.30501 * 125.64816 * 270.26791 * 4 3 2 6 6 C 1.34132 * 109.25792 * 180.14872 * 5 4 3 7 7 C 1.34667 * 108.01653 * 359.61889 * 6 5 4 8 8 N 1.35040 * 125.65323 * 90.00157 * 4 3 2 9 9 C 1.46500 * 126.39450 * 359.97438 * 8 4 3 10 10 C 1.53001 * 109.46805 * 85.03105 * 9 8 4 11 11 F 1.39898 * 109.47259 * 60.00161 * 10 9 8 12 12 F 1.39908 * 109.46760 * 179.97438 * 10 9 8 13 13 F 1.39898 * 109.47016 * 299.99386 * 10 9 8 14 14 C 1.46902 * 111.00071 * 123.96090 * 2 1 3 15 15 C 1.52998 * 109.47370 * 72.13986 * 14 2 1 16 16 C 1.50698 * 115.55084 * 55.63125 * 15 14 2 17 17 H 1.07995 * 120.00181 * 265.15735 * 16 15 14 18 18 C 1.37881 * 120.00078 * 85.14959 * 16 15 14 19 19 N 1.31514 * 119.99726 * 4.50536 * 18 16 15 20 20 Si 1.86799 * 120.00146 * 184.50211 * 18 16 15 21 21 H 1.48494 * 109.46937 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46793 * 119.99928 * 20 18 16 23 23 H 1.48503 * 109.47035 * 240.00327 * 20 18 16 24 24 C 1.53002 * 117.49899 * 269.95752 * 15 14 2 25 25 C 1.53004 * 117.49795 * 201.30111 * 15 14 2 26 26 H 1.08995 * 109.47174 * 57.17472 * 1 2 3 27 27 H 1.09003 * 109.47511 * 177.17791 * 1 2 3 28 28 H 1.09004 * 109.46786 * 297.17539 * 1 2 3 29 29 H 1.08998 * 109.47313 * 173.95118 * 3 2 1 30 30 H 1.08998 * 109.47019 * 53.95870 * 3 2 1 31 31 H 1.07995 * 125.99339 * 179.88620 * 6 5 4 32 32 H 1.08003 * 126.59365 * 180.24784 * 7 6 5 33 33 H 1.09000 * 109.47289 * 205.02926 * 9 8 4 34 34 H 1.08996 * 109.47555 * 325.02838 * 9 8 4 35 35 H 1.08997 * 109.47315 * 192.14484 * 14 2 1 36 36 H 1.09002 * 109.46523 * 312.14103 * 14 2 1 37 37 H 0.96999 * 120.00209 * 185.00172 * 19 18 16 38 38 H 1.09001 * 117.50138 * 0.02562 * 24 15 14 39 39 H 1.08997 * 117.49259 * 145.02365 * 24 15 14 40 40 H 1.08997 * 117.49859 * 214.98646 * 25 15 14 41 41 H 1.08999 * 117.49869 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6369 2.0471 -1.2984 5 7 2.3584 2.0366 -2.3858 6 6 1.7317 2.7418 -3.3392 7 6 0.5741 3.1998 -2.8256 8 7 0.5135 2.7595 -1.5310 9 6 -0.5682 3.0131 -0.5762 10 6 -0.2166 4.2304 0.2813 11 9 -0.0501 5.3488 -0.5426 12 9 -1.2500 4.4730 1.1928 13 9 0.9713 3.9830 0.9775 14 6 1.9954 -0.7661 1.1375 15 6 1.7652 -2.2594 0.8970 16 6 2.3320 -2.8058 -0.3880 17 1 1.7070 -2.8797 -1.2656 18 6 3.6487 -3.2112 -0.4433 19 7 4.3851 -3.2045 0.6463 20 14 4.3866 -3.7700 -2.0659 21 1 3.3577 -3.6840 -3.1332 22 1 5.5351 -2.8956 -2.4146 23 1 4.8535 -5.1741 -1.9399 24 6 0.4534 -2.8626 1.4033 25 6 1.7687 -3.1805 2.1187 26 1 -0.3633 0.5570 -0.8635 27 1 -0.3634 -1.0264 -0.0506 28 1 -0.3633 0.4694 0.9143 29 1 3.0797 1.3443 0.1083 30 1 1.5612 1.9272 0.8310 31 1 2.0902 2.9091 -4.3441 32 1 -0.1647 3.7991 -3.3370 33 1 -1.4939 3.2058 -1.1185 34 1 -0.6981 2.1418 0.0657 35 1 3.0635 -0.5752 1.2410 36 1 1.4818 -0.4616 2.0494 37 1 5.3295 -3.4198 0.5948 38 1 -0.2458 -2.1954 1.9074 39 1 0.0006 -3.6548 0.8071 40 1 2.1808 -4.1818 1.9929 41 1 1.9355 -2.7227 3.0937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602771472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:24 Heat of formation + Delta-G solvation = -61.209822 kcal Electronic energy + Delta-G solvation = -28021.644644 eV Core-core repulsion = 23716.673583 eV Total energy + Delta-G solvation = -4304.971061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -51.29097 -48.82009 -48.77177 -43.17959 -39.31012 -36.88954 -35.64496 -33.84165 -31.46556 -30.23202 -28.65590 -27.82003 -27.10715 -24.88030 -23.61282 -22.81903 -22.38661 -20.87264 -20.82704 -19.71781 -19.66423 -19.11816 -17.98060 -17.73926 -16.60980 -16.51519 -16.26461 -15.94387 -15.66060 -15.60057 -15.35757 -15.18904 -15.14440 -15.10205 -14.92353 -14.88717 -14.45745 -14.31009 -13.93184 -13.62463 -13.43462 -13.34268 -13.07106 -12.81357 -12.76029 -12.54813 -12.42168 -12.26646 -11.91347 -11.22030 -10.93065 -10.83970 -10.83673 -10.25053 -9.85617 -9.41042 -8.95886 -7.99574 -6.03601 0.76062 1.34815 1.40185 1.45455 1.53871 1.68566 2.14148 2.51108 2.55887 2.74718 3.02247 3.14802 3.30972 3.47351 3.58778 3.65477 3.79465 3.93774 4.19246 4.33533 4.40777 4.42069 4.54105 4.58984 4.64405 4.74154 4.74878 4.87387 4.97683 5.04742 5.14681 5.21055 5.36284 5.72801 5.73768 5.79934 5.90929 6.00302 6.29872 6.31888 6.60174 6.98493 7.16864 7.61089 9.09022 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.004397 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.419066 B = 6366.164309 C = 7401.420094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.531 5.531 3 C 0.137 3.863 4 C 0.223 3.777 5 N -0.516 5.516 6 C -0.053 4.053 7 C -0.031 4.031 8 N -0.461 5.461 9 C 0.053 3.947 10 C 0.441 3.559 11 F -0.180 7.180 12 F -0.170 7.170 13 F -0.188 7.188 14 C 0.120 3.880 15 C 0.026 3.974 16 C -0.462 4.462 17 H 0.040 0.960 18 C 0.026 3.974 19 N -0.912 5.912 20 Si 0.933 3.067 21 H -0.275 1.275 22 H -0.289 1.289 23 H -0.284 1.284 24 C -0.186 4.186 25 C -0.160 4.160 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.187 0.813 32 H 0.222 0.778 33 H 0.183 0.817 34 H 0.145 0.855 35 H 0.043 0.957 36 H 0.028 0.972 37 H 0.254 0.746 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.731 17.357 -1.172 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.256 5.256 3 C 0.008 3.992 4 C -0.040 4.040 5 N -0.235 5.235 6 C -0.199 4.199 7 C -0.161 4.161 8 N -0.147 5.147 9 C -0.072 4.072 10 C 0.386 3.614 11 F -0.162 7.162 12 F -0.151 7.151 13 F -0.170 7.170 14 C -0.007 4.007 15 C 0.025 3.975 16 C -0.501 4.501 17 H 0.058 0.942 18 C -0.172 4.172 19 N -0.552 5.552 20 Si 0.761 3.239 21 H -0.200 1.200 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.223 4.223 25 C -0.198 4.198 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.204 0.796 32 H 0.239 0.761 33 H 0.201 0.799 34 H 0.163 0.837 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.733 16.683 -1.549 21.664 hybrid contribution 0.205 0.413 0.065 0.465 sum -13.528 17.096 -1.485 21.852 Atomic orbital electron populations 1.22615 0.87048 1.03130 0.99627 1.61517 1.08219 1.10495 1.45361 1.20413 1.01169 0.88439 0.89188 1.23065 0.85293 0.98316 0.97293 1.70283 1.32043 1.20582 1.00578 1.22811 0.94834 1.01820 1.00425 1.23314 1.02650 1.06127 0.84008 1.45227 1.16874 1.41037 1.11518 1.23538 0.92995 0.96818 0.93827 1.20995 0.74716 0.85895 0.79783 1.93216 1.95368 1.55723 1.71878 1.93240 1.58235 1.95062 1.68561 1.93202 1.48971 1.93988 1.80823 1.21392 0.97687 0.93263 0.88386 1.18869 0.95412 0.89865 0.93330 1.20441 0.95595 1.38633 0.95396 0.94179 1.25414 0.98048 0.95921 0.97814 1.70084 1.06310 1.51245 1.27594 0.85893 0.78421 0.77405 0.82158 1.20024 1.21544 1.20991 1.23025 0.90843 1.03781 1.04611 1.22399 1.00573 1.00649 0.96164 0.91632 0.91149 0.94055 0.90302 0.91597 0.79643 0.76117 0.79947 0.83714 0.93829 0.95412 0.93676 0.88828 0.91061 0.92607 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 7.68 127.69 0.98 1.66 16 2 N -0.53 -20.01 4.42 -927.09 -4.09 -24.10 16 3 C 0.14 4.60 5.08 85.56 0.43 5.04 16 4 C 0.22 7.07 6.20 138.13 0.86 7.93 16 5 N -0.52 -18.90 11.25 -188.14 -2.12 -21.02 16 6 C -0.05 -1.44 11.87 83.52 0.99 -0.45 16 7 C -0.03 -0.60 11.58 83.09 0.96 0.36 16 8 N -0.46 -10.11 2.25 -514.29 -1.16 -11.26 16 9 C 0.05 0.71 5.00 86.38 0.43 1.15 16 10 C 0.44 7.31 3.29 71.98 0.24 7.55 16 11 F -0.18 -3.25 17.23 44.97 0.78 -2.47 16 12 F -0.17 -2.58 17.32 44.97 0.78 -1.80 16 13 F -0.19 -4.21 14.73 44.97 0.66 -3.55 16 14 C 0.12 5.06 4.88 86.30 0.42 5.48 16 15 C 0.03 1.23 1.25 -52.93 -0.07 1.16 16 16 C -0.46 -25.49 8.54 25.60 0.22 -25.27 16 17 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 18 C 0.03 1.50 5.43 84.66 0.46 1.95 16 19 N -0.91 -53.27 12.65 21.45 0.27 -53.00 16 20 Si 0.93 46.47 29.54 68.60 2.03 48.50 16 21 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 23 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 24 C -0.19 -7.44 8.36 30.62 0.26 -7.18 16 25 C -0.16 -7.32 9.17 30.62 0.28 -7.04 16 26 H 0.07 1.67 5.52 -2.39 -0.01 1.65 16 27 H 0.07 2.27 6.16 -2.39 -0.01 2.26 16 28 H 0.04 0.94 7.27 -2.38 -0.02 0.92 16 29 H 0.08 3.02 7.86 -2.39 -0.02 3.01 16 30 H 0.07 1.85 5.70 -2.39 -0.01 1.84 16 31 H 0.19 4.06 8.06 -2.91 -0.02 4.04 16 32 H 0.22 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.18 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.15 1.94 4.56 -2.39 -0.01 1.93 16 35 H 0.04 2.10 7.81 -2.39 -0.02 2.08 16 36 H 0.03 1.03 7.99 -2.39 -0.02 1.01 16 37 H 0.25 14.38 8.32 -92.71 -0.77 13.61 16 38 H 0.09 3.11 8.05 -2.39 -0.02 3.09 16 39 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -71.40 344.77 4.67 -66.74 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.06 Total: 9.64 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 6.46 Total: -7.66 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -7.10 Total: -109.38 kcal Atomic # 9 Polarization: -10.04 SS G_CDS: 2.22 Total: -7.82 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -71.40 4.67 -66.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602771472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.526 kcal (2) G-P(sol) polarization free energy of solvation -71.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds